mRNA_H-paniculata_contig65481.14404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081) HSP 1 Score: 63.5 bits (153), Expect = 4.320e-11 Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
+PK + EA + E W A + E++ + N WT VE K+ + M +YK+KIGEDGKVE YK HLV YRQ
Sbjct: 49 DPKCYEEAMQILDHEKWQEAIKSEMESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE) HSP 1 Score: 55.5 bits (132), Expect = 3.120e-8 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 70 EVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
E + L +N W VE PK++ VV ++KRKIGE+GKVE+YK LVA Y Q
Sbjct: 4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA) HSP 1 Score: 58.2 bits (139), Expect = 4.830e-8 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
EP N EA + E W A ++E++ + NG W ++RPK VV + +YK K+ E GKV+K+K LV Y Q G
Sbjct: 788 EPLNFEEA---VKIEKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYG 863
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: UPI000C1D611E (uncharacterized protein LOC111385039 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D611E) HSP 1 Score: 57.0 bits (136), Expect = 1.190e-7 Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 4 PKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
P+ +H+A AS +HW A VE+ + N WT PK K + +YK K G DG++++YK HLVA Y Q
Sbjct: 217 PQFYHQAVAS---DHWREAMAVELIAMESNNNWTITRLPKEKHSIGRRWVYKVKYGPDGRIDRYKAHLVAKDYTQ 288
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A2N5URY5_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5URY5_9BASI) HSP 1 Score: 55.8 bits (133), Expect = 3.010e-7 Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 1
Query: 4 PKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
P NH A A E + W +AEEV++ +I + W + + + YK+K+G D +V KYK H+ A + QI G
Sbjct: 190 PSNHARAMACDEQDQWKKAEEVKIANMISHNVWELIPLQPHHHTIPSTWAYKKKLGADNQVVKYKAHICAQGFWQIYG 267
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A061DP28_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DP28_THECC) HSP 1 Score: 55.8 bits (133), Expect = 3.170e-7 Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 43 EHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
EHW+ A + ++ ++ N W+ V+RPK++ ++ + I+KRK+ DG + +YK LV Y QI G
Sbjct: 643 EHWVTAIKEKLNMIVKNKTWSLVDRPKDRQLIGVKWIFKRKLNPDGTLNRYKARLVVKGYSQILG 707
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO) HSP 1 Score: 55.1 bits (131), Expect = 5.850e-7 Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
+P+++ EA + PE W A E E L+ N W V PK++ ++ +++K+G +G++ +YK +VA ++QI+G
Sbjct: 282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEG 360
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A151T8W3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T8W3_CAJCA) HSP 1 Score: 54.3 bits (129), Expect = 7.790e-7 Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1
Query: 1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
EPKN +A A+ + WL A + E L+DNG WT V P N++ + ++ K DG V KYK LVA + Q G
Sbjct: 24 EPKNTKQALAN---DTWLAAMKQEYNALLDNGTWTLVSLPSNRIAIGCKWVFCIKENPDGTVHKYKARLVAKGFHQQYG 99
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR) HSP 1 Score: 50.8 bits (120), Expect = 1.090e-6 Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 70 EVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQ 228
E+ + +N W V+ P+ +++ +++KRKIG DGKVE YK LVA YRQ
Sbjct: 4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQ 56
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Match: A0A1E1KE04_9HELO (Integrase catalytic domain-containing protein n=1 Tax=Rhynchosporium agropyri TaxID=914238 RepID=A0A1E1KE04_9HELO) HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6 Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 1 EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMIYKRKIGEDGKVEKYKCHLVAHRYRQIKG 237
+P+++ EA + PE W A E E L+ N W V PK++ ++ +++K+G +G++ +YK +VA ++QI+G
Sbjct: 903 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVSIPKDRKPLTTKWTFRKKLGGEGEITRYKARIVARGFQQIEG 981 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65481.14404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig65481.14404.1 >prot_H-paniculata_contig65481.14404.1 ID=prot_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp EPKNHHEAQASPEWEHWLRAEEVEVQGLIDNGAWTQVERPKNKLVVSMMMback to top mRNA from alignment at H-paniculata_contig65481:77..313- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig65481.14404.1 ID=mRNA_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig65481:77..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig65481:77..313- >mRNA_H-paniculata_contig65481.14404.1 ID=mRNA_H-paniculata_contig65481.14404.1|Name=mRNA_H-paniculata_contig65481.14404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig65481:77..313- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |