mRNA_H-paniculata_contig65480.14403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65480.14403.1
Unique NamemRNA_H-paniculata_contig65480.14403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65480.14403.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 FTYLVIVLWLGTTVFWLVRMNRALAMFHGLFIIPALQV 117
            FTYLV  +WLGTT+FWLVRMNRALAMFHGLFIIPALQV
Sbjct:  472 FTYLVFAIWLGTTIFWLVRMNRALAMFHGLFIIPALQV 509
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BLAST of mRNA_H-paniculata_contig65480.14403.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 6.450e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 FTYLVIVLWLGTTVFWLVRMNRALAMFHGLFIIPALQV 117
            FTYLV  +WLGTT+FWLVRMN+ALAMFHGLFIIPALQV
Sbjct:  475 FTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQV 512
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BLAST of mRNA_H-paniculata_contig65480.14403.1 vs. uniprot
Match: A0A7S2D151_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D151_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.320e-8
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 FTYLVIVLWLGTTVFWLVRMNRALAMFHGLFIIPALQV 117
            FTY  +VLWL TT FWL RMN+ALA+F  LFIIP LQV
Sbjct:   33 FTYFTLVLWLSTTAFWLYRMNKALALFDPLFIIPVLQV 70
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BLAST of mRNA_H-paniculata_contig65480.14403.1 vs. uniprot
Match: A0A7S2XXT4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXT4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.620e-8
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 FTYLVIVLWLGTTVFWLVRMNRALAMFHGLFIIPALQV 117
            F Y+++V W+ T VFWL RMNRALA+F+GLFIIP LQV
Sbjct:   70 FFYIILVFWIITAVFWLYRMNRALALFNGLFIIPVLQV 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65480.14403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K6Y8_9PHAE1.850e-1389.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9H4_ECTSI6.450e-1386.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2D151_9STRA2.320e-871.05Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2XXT4_9STRA6.620e-868.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65480contigH-paniculata_contig65480:515..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog2880.D7G9H4
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2922@1,KOG2922@2759
Ec32 ortholog descriptionMagnesium transporter NIPA
Ec32 orthologEc-28_000930.3
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.204042-CDS-H-paniculata_contig65480:514..6431622930768.204042-CDS-H-paniculata_contig65480:514..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65480 515..643 -
1691481443.6200998-CDS-H-paniculata_contig65480:514..6431691481443.6200998-CDS-H-paniculata_contig65480:514..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65480 515..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65480.14403.1prot_H-paniculata_contig65480.14403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65480 515..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65480.14403.1

>prot_H-paniculata_contig65480.14403.1 ID=prot_H-paniculata_contig65480.14403.1|Name=mRNA_H-paniculata_contig65480.14403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
PFTYLVIVLWLGTTVFWLVRMNRALAMFHGLFIIPALQVLLS*
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mRNA from alignment at H-paniculata_contig65480:515..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65480.14403.1 ID=mRNA_H-paniculata_contig65480.14403.1|Name=mRNA_H-paniculata_contig65480.14403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig65480:515..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTTCACCTACTTGGTTATCGTCCTTTGGTTGGGAACGACTGTGTTCTG
GCTGGTGCGGATGAACAGGGCTCTGGCTATGTTTCATGGACTTTTCATCA
TTCCAGCGTTGCAGGTATTGTTGAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig65480:515..643-

>mRNA_H-paniculata_contig65480.14403.1 ID=mRNA_H-paniculata_contig65480.14403.1|Name=mRNA_H-paniculata_contig65480.14403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig65480:515..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTTCACCTACTTGGTTATCGTCCTTTGGTTGGGAACGACTGTGTTCTG
GCTGGTGCGGATGAACAGGGCTCTGGCTATGTTTCATGGACTTTTCATCA
TTCCAGCGTTGCAGGTATTGTTGAGCTAGCCTTTCACCTACTTGGTTATC
GTCCTTTGGTTGGGAACGACTGTGTTCTGGCTGGTGCGGATGAACAGGGC
TCTGGCTATGTTTCATGGACTTTTCATCATTCCAGCGTTGCAGGTATTGT
TGAGCTAG
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