mRNA_H-paniculata_contig65476.14401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65476.14401.1
Unique NamemRNA_H-paniculata_contig65476.14401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 4.870e-78
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            MFFLKEYYP LIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPVLIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.260e-74
Identity = 111/120 (92.50%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            MFFLKEYYPALIFLGFSL LA +IFGAS+ILA+SD+D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW+VSLSQLPSIGYWSM+DFLFELVVGFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPALIFLGFSLFLAALIFGASYILAISDSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 221 bits (564), Expect = 2.410e-71
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            MF LKEYYPALIFL FS  LA +IFGAS+ILAVS AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW+VSLSQLPSIGYWSM+DFLFELVVGFIYAWQIGSLDWE
Sbjct:    1 MFLLKEYYPALIFLVFSFVLAAIIFGASYILAVSSADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 208 bits (529), Expect = 5.070e-66
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            MFFL+EY PALI+L FSL LA VIFGAS+ LA++++D EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW+ SLSQLP +GYWS++DFLFELVVGFIYAWQIGSLDWE
Sbjct:    1 MFFLREYSPALIYLCFSLILASVIFGASYTLALAESDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDWE 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.950e-63
Identity = 95/120 (79.17%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            MF+L EYY  LIFL  S+ LA +IFGAS++LA+S++D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW++SLSQ+PSIGYWSM+DFLFELVVGFIYAW+IGSL+W 
Sbjct:    1 MFYLHEYYSILIFLVISVLLAFIIFGASYLLALSNSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEWS 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 200 bits (509), Expect = 5.380e-63
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDW 357
            MF+L EYYP L+F   S+ LA +IFG S+ILA S AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+F+FPW+VSLSQLPS+GYWSM+DFLFEL+VGFIYAW+IGSL+W
Sbjct:    1 MFYLHEYYPVLLFFLISILLAFLIFGLSYILAFSKADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.020e-60
Identity = 94/119 (78.99%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:    1 MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDW 357
            MF   EYYP L+FL     LA +IFGAS+ L  S AD EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPW+++LSQLPS+GYWSM+DFL ELVVGFIYAWQIGSL+W
Sbjct:    1 MFCFHEYYPVLLFLVVGFILAVIIFGASYFLVFSKADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.220e-59
Identity = 88/117 (75.21%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:   10 LKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            L EYYP L+F+ FSL L+ +IFGAS+  ++++ D EK+SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPW V+LS+LP++GYWSM+DF+ ELV+GFIYAWQIGSLDWE
Sbjct:    4 LPEYYPILLFITFSLFLSLLIFGASYTFSIAEPDNEKVSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDWE 120
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: Q85L81_ECTSI (Ribosomal protein S14 n=13 Tax=Ectocarpaceae TaxID=2878 RepID=Q85L81_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.310e-59
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 
Query:  360 MRNLDYKRRQSFALYESKRKTLQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCIKTGRSRAVISFLKISRLKFRRLVSKGDFQGFRKSCW 647
            MRNLDYKRRQSFALYESKRKTLQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCIKTGRSRAVISFLKISRLKFRRLVSKGDFQGFRKSCW
Sbjct:    1 MRNLDYKRRQSFALYESKRKTLQAVATNQNLEVSLRWWAQLEKSKLPRQSSLSRVHNHCIKTGRSRAVISFLKISRLKFRRLVSKGDFQGFRKSCW 96
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BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.080e-56
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:   13 KEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLP-SIGYWSMLDFLFELVVGFIYAWQIGSLDWE 360
            +EYYP L+F   S+ LAG+IFGAS+ LA++  DTEKLSSYECGFDPYEDARNAFDVRFYLVAILFL+FD+E +FLFPW+V L Q   S+G WSM+DFLFEL+VGF+YAWQIGSLDWE
Sbjct:    7 QEYYPILVFTFLSIGLAGLIFGASYALALAKPDTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDWE 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65476.14401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZET4_ECTSI4.870e-7899.17NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
A0A0U1XDC4_9PHAE6.260e-7492.50NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
Q94YZ1_PYLLI2.410e-7190.83NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
A0A0U1WNN7_SARFS5.070e-6682.50NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
A0A4Y5T7V9_9PHAE1.950e-6379.17NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
Q2TU99_DICDH5.380e-6379.83NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
A0A8F0K0X7_9PHAE1.020e-6078.99NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A8E8U4L6_9PHAE1.220e-5975.21NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
Q85L81_ECTSI2.310e-59100.00Ribosomal protein S14 n=13 Tax=Ectocarpaceae TaxID... [more]
A0A7S6UA31_9STRA2.080e-5674.36NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65476contigH-paniculata_contig65476:149..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score148.7
Seed ortholog evalue1.8e-33
Seed eggNOG ortholog1380394.JADL01000005_gene5381
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RGUT@1224,2JSW8@204441,2U72Q@28211,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size647
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.9109373-UTR-H-paniculata_contig65476:148..4321622930767.9109373-UTR-H-paniculata_contig65476:148..432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65476 149..432 -
1691481443.4882948-UTR-H-paniculata_contig65476:148..4321691481443.4882948-UTR-H-paniculata_contig65476:148..432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65476 149..432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.9348042-CDS-H-paniculata_contig65476:432..7951622930767.9348042-CDS-H-paniculata_contig65476:432..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65476 433..795 -
1691481443.5119061-CDS-H-paniculata_contig65476:432..7951691481443.5119061-CDS-H-paniculata_contig65476:432..795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65476 433..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65476.14401.1prot_H-paniculata_contig65476.14401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65476 433..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65476.14401.1

>prot_H-paniculata_contig65476.14401.1 ID=prot_H-paniculata_contig65476.14401.1|Name=mRNA_H-paniculata_contig65476.14401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MFFLKEYYPALIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDP
YEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDF
LFELVVGFIYAWQIGSLDWE*
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mRNA from alignment at H-paniculata_contig65476:149..795-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65476.14401.1 ID=mRNA_H-paniculata_contig65476.14401.1|Name=mRNA_H-paniculata_contig65476.14401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at H-paniculata_contig65476:149..795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTCTTAAAAGAATATTATCCTGCATTAATTTTTTTAGGGTTTAG
CCTTGCTTTAGCCGGCGTTATTTTTGGCGCCTCGTTTATTTTAGCTGTTT
CAGATGCGGATACTGAAAAATTATCTTCTTATGAGTGCGGTTTTGATCCT
TATGAAGATGCTCGTAATGCTTTTGATGTTCGTTTTTATCTTGTAGCAAT
CCTTTTTCTTCTTTTTGATATAGAAACTATTTTTCTTTTCCCCTGGTCAG
TTTCTTTAAGTCAGTTACCTTCAATAGGTTATTGGTCTATGCTAGACTTT
CTTTTTGAATTAGTCGTTGGTTTTATTTATGCTTGGCAAATTGGTAGTTT
AGATTGGGAATGAGAAATTTAGATTACAAGCGTCGTCAATCTTTTGCTTT
ATACGAATCTAAACGAAAAACTCTCCAAGCTGTAGCAACTAATCAAAACT
TAGAAGTATCATTACGCTGGTGGGCTCAATTAGAAAAATCTAAGCTCCCA
AGACAAAGTAGTTTAAGTAGAGTTCATAATCACTGTATAAAAACTGGTAG
ATCTCGAGCTGTTATAAGTTTTTTAAAAATATCTAGGTTAAAGTTTCGTC
GTTTGGTATCAAAAGGAGATTTTCAAGGTTTCCGTAAATCTTGTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig65476:149..795-

>mRNA_H-paniculata_contig65476.14401.1 ID=mRNA_H-paniculata_contig65476.14401.1|Name=mRNA_H-paniculata_contig65476.14401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig65476:149..795- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTCTTAAAAGAATATTATCCTGCATTAATTTTTTTAGGGTTTAG
CCTTGCTTTAGCCGGCGTTATTTTTGGCGCCTCGTTTATTTTAGCTGTTT
CAGATGCGGATACTGAAAAATTATCTTCTTATGAGTGCGGTTTTGATCCT
TATGAAGATGCTCGTAATGCTTTTGATGTTCGTTTTTATCTTGTAGCAAT
CCTTTTTCTTCTTTTTGATATAGAAACTATTTTTCTTTTCCCCTGGTCAG
TTTCTTTAAGTCAGTTACCTTCAATAGGTTATTGGTCTATGCTAGACTTT
CTTTTTGAATTAGTCGTTGGTTTTATTTATGCTTGGCAAATTGGTAGTTT
AGATTGGGAATGAATGTTTTTCTTAAAAGAATATTATCCTGCATTAATTT
TTTTAGGGTTTAGCCTTGCTTTAGCCGGCGTTATTTTTGGCGCCTCGTTT
ATTTTAGCTGTTTCAGATGCGGATACTGAAAAATTATCTTCTTATGAGTG
CGGTTTTGATCCTTATGAAGATGCTCGTAATGCTTTTGATGTTCGTTTTT
ATCTTGTAGCAATCCTTTTTCTTCTTTTTGATATAGAAACTATTTTTCTT
TTCCCCTGGTCAGTTTCTTTAAGTCAGTTACCTTCAATAGGTTATTGGTC
TATGCTAGACTTTCTTTTTGAATTAGTCGTTGGTTTTATTTATGCTTGGC
AAATTGGTAGTTTAGATTGGGAATGA
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