mRNA_H-paniculata_contig6546.14400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6546.14400.1
Unique NamemRNA_H-paniculata_contig6546.14400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A6H5JKJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 4.310e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 3 
Query:  381 AAGGDMPSVIRELEALGRNSRRPKKANHGKRPCSHVGRRARRRRK 515
            AA GD   V+  +EA+ RN+RRPKKANHGKRPCSHVGRR RRRRK
Sbjct:   69 AAQGDFLPVVPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRK 113
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A2R5GTF7_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTF7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.920e-6
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 3 
Query:  351 DSPVVDCTECAAGGDMPSVIRELEALGRNSRRPKKANHGKRPCSHVGRRARRRRKVT 521
            + PVV          +   I  L+ L RN+R+PKKANHGKRPCSHV RR +RR+  T
Sbjct:   52 EMPVVHANPLQRSSLLQQEIETLQMLNRNARKPKKANHGKRPCSHVRRREKRRKVKT 108
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A1V9YWY3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWY3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.190e-5
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:  408 IRELEALGRNSRRPKKANHGKRPCSHVGRRARR 506
            I  ++ +GRNSR+PKKANHGKRPCSHV RR+RR
Sbjct:   61 IEGMQLVGRNSRKPKKANHGKRPCSHVRRRSRR 93
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A7S0W7F3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7F3_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 3.700e-5
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:  384 AGGDMPSVIRELEALGRNSRRPKKANHGKRPCSHVGRRARR 506
            AGG       E+EA+ RN+RRPKKANHGKRP SHVGRR RR
Sbjct:   63 AGG----AAEEVEAMNRNARRPKKANHGKRPNSHVGRRKRR 99
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A067CWA3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CWA3_SAPPC)

HSP 1 Score: 52.0 bits (123), Expect = 6.410e-5
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:  408 IRELEALGRNSRRPKKANHGKRPCSHVGRRARR 506
            I  ++ +GRNSR+PKKANHGKRPCSHV RR+RR
Sbjct:   64 IPGMQLVGRNSRKPKKANHGKRPCSHVRRRSRR 96
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A6G0WDB6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDB6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 8.140e-5
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  417 LEALGRNSRRPKKANHGKRPCSHVGRRARR 506
            ++ LGRNSR+PKKANHGKRPCSHV RR++R
Sbjct:   64 MQLLGRNSRKPKKANHGKRPCSHVRRRSKR 93
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BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Match: A0A024UNY4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UNY4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.640e-5
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  417 LEALGRNSRRPKKANHGKRPCSHVGRRARR 506
            ++ LGRNSR+PKKANHGKRPCSHV RR++R
Sbjct:   71 MQLLGRNSRKPKKANHGKRPCSHVRRRSKR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6546.14400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JKJ9_9PHAE4.310e-1073.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GTF7_9STRA6.920e-649.12Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A1V9YWY3_9STRA3.190e-572.73Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S0W7F3_9CRYP3.700e-568.29Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A067CWA3_SAPPC6.410e-572.73Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A6G0WDB6_9STRA8.140e-576.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UNY4_9STRA9.640e-576.67Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6546contigH-paniculata_contig6546:9639..11640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003250.1
Exons2
Model size1364
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6546.14400.1prot_H-paniculata_contig6546.14400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6546 10461..11629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.8269188-UTR-H-paniculata_contig6546:9638..104601622930767.8269188-UTR-H-paniculata_contig6546:9638..10460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6546 9639..10460 -
1691481443.4438932-UTR-H-paniculata_contig6546:9638..104601691481443.4438932-UTR-H-paniculata_contig6546:9638..10460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6546 9639..10460 -
1622930767.8689363-UTR-H-paniculata_contig6546:11629..116401622930767.8689363-UTR-H-paniculata_contig6546:11629..11640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6546 11630..11640 -
1691481443.4761572-UTR-H-paniculata_contig6546:11629..116401691481443.4761572-UTR-H-paniculata_contig6546:11629..11640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6546 11630..11640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.8440208-CDS-H-paniculata_contig6546:10460..105471622930767.8440208-CDS-H-paniculata_contig6546:10460..10547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6546 10461..10547 -
1691481443.4560544-CDS-H-paniculata_contig6546:10460..105471691481443.4560544-CDS-H-paniculata_contig6546:10460..10547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6546 10461..10547 -
1622930767.8568602-CDS-H-paniculata_contig6546:11185..116291622930767.8568602-CDS-H-paniculata_contig6546:11185..11629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6546 11186..11629 -
1691481443.4657335-CDS-H-paniculata_contig6546:11185..116291691481443.4657335-CDS-H-paniculata_contig6546:11185..11629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6546 11186..11629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6546.14400.1

>prot_H-paniculata_contig6546.14400.1 ID=prot_H-paniculata_contig6546.14400.1|Name=mRNA_H-paniculata_contig6546.14400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MSTTVAALRCLRAGSTNAVRPVVLNAFSQMARQMPLSDTATTKISSSELV
QAQLSAVLTANTTRARGDSSRTSLHMMRAMAATSRVHGQTSGTIGVGLMN
TLAKQLLLDVHGGDSPVVDCTECAAGGDMPSVIRELEALGRNSRRPKKAN
HGKRPCSHVGRRARRRRKVTGTSGKA*
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mRNA from alignment at H-paniculata_contig6546:9639..11640-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6546.14400.1 ID=mRNA_H-paniculata_contig6546.14400.1|Name=mRNA_H-paniculata_contig6546.14400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2002bp|location=Sequence derived from alignment at H-paniculata_contig6546:9639..11640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGCAAAGGATGTCTACAACCGTAGCGGCATTAAGGTGCCTACGGGCG
GGGTCAACGAATGCTGTACGGCCCGTAGTATTGAACGCCTTTTCTCAGAT
GGCACGTCAGATGCCACTTTCAGACACAGCCACGACGAAAATATCATCCT
CAGAGCTGGTACAAGCACAGCTATCGGCAGTCCTGACAGCGAACACTACG
AGGGCCAGGGGTGATAGCAGCCGGACTTCGCTCCACATGATGAGGGCCAT
GGCAGCAACATCACGGGTTCATGGACAAACAAGTGGAACTATTGGTGTGG
GGTTGATGAACACCTTGGCGAAGCAATTGTTGTTGGATGTACATGGAGGC
GATTCCCCTGTCGTCGACTGTACGGAGTGCGCAGCTGGTGGGGACATGCC
TTCAGTGATCAGGGAGCTCGAGGCGTTGGGGCGCAACTCTAGGAGACCCA
AAAAGGCGAGAAATAGGGGTATCATCGCTCCCTGTGTGTCCAAGCTATTT
TAGGCTCGGGTGGGGTGTGAACAAGTTTTGTGCGTTTTTGTCGCATTTTT
CGAGGTATAGTGAAGTCGGTACTAATTGCACAGCGATCAGGAGACCAAAC
TGCTAATGTCAGTACCGTGCTCGCAGGCATCCATCAACGGGGTGTACTCA
AATCACACGTACGATTGGAGGATTTGACCTTCATTGCTGTGATGGGATGA
ATCCATTAACTTGCACAAGTAACCCGGGTTTGCGCGCCCTCTCAAGTTTC
ACCCCACCATTTCGTACACTGCTGGAAGTAGCCAACTCCTGCCCGTGGAG
ATAGTTCCCTCAATGGTATTTTGTGCCCGGCTGCCTACTGTCGAACATGG
ATACACTGTGTACTATTGAATCAGTATCGTTATTTCACCTACAATCAGTG
CGACAGCCGTGCACCTCCGCCTGTGGGATATTAGCGAATAACTCGACTGT
CTTCGTTTCATCCCTTGTGAACATTGTACCCGGACAGAATCAACGTCTGC
ATTGGTTTATCATCTTCTGGCACACATTTTTTAACCTTTTCCGTCTCTGG
TTTTACATGATCGCGGACCCATGTTCGATTTATGCCTTATCAGGCAAATC
ACGGTAAGCGACCTTGCTCGCACGTGGGACGGAGAGCTCGCCGCCGAAGA
AAGGTTACTGGAACCTCCGGGAAGGCCTAAGCGAGCCGAGGTAGTCGCTT
GTGCCGTGGTTCAAATAACCCAGCACGACCATATCGCATATACCTGAGAC
ACGGGAGACAAACGGCGGACAGAGGCTCGAAGTTCAGAGTCGATTCATCC
TTAGCTCTGACCTAATGACGCGAAGCTCAAGGAACGTGTCAGCTTCGCTA
AAGATCGACCAAGGTCGAAGGTGTAGGCGTTTTTACGATGATGCTTGAAG
CCGTCACCCCAGCATGCGGGTATGGAGCGCGCCGCGTGTTGCGCTGTCCA
TTTGATTGCTTATTAATTCAAGCGCGTATGCTCCCCTGTATCGCACGGGC
GAGGACGGGCGGGTGGCGTATCAAAGGCAGGGTATGGGAGGACTTGAGGA
TTGTGGCGTGAAGCTGTTCTGCCGGAGGGTGTGCAGACTCCGGGGGTACT
ATTTGATTGTAATATATTACAATAGGATTTTTGTGTTGGTTGCTTGGGGC
AGGGGCAGGGGCCGGAATTGAAAGATATTTTCCTCTTGAATCTTGGAATT
ATTCACCTTGAGACAAAACGCCGACTGAGGGTTGTGGATAATTGGAGAGA
ATAACGGTGGAACCTAAGGTCTGGTCGGTGGGTTGAAAGTTTCCCTTGAC
GGGTTCTTTTGTTTATTCTCGCCTTTCGTCAATCAGTCTCCCTGTATTCG
CCGCTGCCCTTCTTTCGTCAAAAAGTCGTTACAACAATACCGTGACTTCT
GGTCGCGCTCGTCTTCAACCACGGCAAGATGACCTTATACCTTCGACAGC
CGCTACTCCAGTTAGGGTTCACATTCGCGGTTGAATGGCTCCTATGTGAA
GC
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Coding sequence (CDS) from alignment at H-paniculata_contig6546:9639..11640-

>mRNA_H-paniculata_contig6546.14400.1 ID=mRNA_H-paniculata_contig6546.14400.1|Name=mRNA_H-paniculata_contig6546.14400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig6546:9639..11640- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACAACCGTAGCGGCATTAAGGTGCCTACGGGCGGGGTCAACGAA
TGCTGTACGGCCCGTAGTATTGAACGCCTTTTCTCAGATGGCACGTCAGA
TGCCACTTTCAGACACAGCCACGACGAAAATATCATCCTCAGAGCTGGTA
CAAGCACAGCTATCGGCAGTCCTGACAGCGAACACTACGAGGGCCAGGGG
TGATAGCAGCCGGACTTCGCTCCACATGATGAGGGCCATGGCAGCAACAT
CACGGGTTCATGGACAAACAAGTGGAACTATTGGTGTGGGGTTGATGAAC
ACCTTGGCGAAGCAATTGTTGTTGGATGTACATGGAGGCGATTCCCCTGT
CGTCGACTGTACGGAGTGCGCAGCTGGTGGGGACATGCCTTCAGTGATCA
GGGAGCTCGAGGCGTTGGGGCGCAACTCTAGGAGACCCAAAAAGATGTCT
ACAACCGTAGCGGCATTAAGGTGCCTACGGGCGGGGTCAACGAATGCTGT
ACGGCCCGTAGTATTGAACGCCTTTTCTCAGATGGCACGTCAGATGCCAC
TTTCAGACACAGCCACGACGAAAATATCATCCTCAGAGCTGGTACAAGCA
CAGCTATCGGCAGTCCTGACAGCGAACACTACGAGGGCCAGGGGTGATAG
CAGCCGGACTTCGCTCCACATGATGAGGGCCATGGCAGCAACATCACGGG
TTCATGGACAAACAAGTGGAACTATTGGTGTGGGGTTGATGAACACCTTG
GCGAAGCAATTGTTGTTGGATGTACATGGAGGCGATTCCCCTGTCGTCGA
CTGTACGGAGTGCGCAGCTGGTGGGGACATGCCTTCAGTGATCAGGGAGC
TCGAGGCGTTGGGGCGCAACTCTAGGAGACCCAAAAAGGCAAATCACGGT
AAGCGACCTTGCTCGCACGTGGGACGGAGAGCTCGCCGCCGAAGAAAGGT
TACTGGAACCTCCGGGAAGGCCTAAGCAAATCACGGTAAGCGACCTTGCT
CGCACGTGGGACGGAGAGCTCGCCGCCGAAGAAAGGTTACTGGAACCTCC
GGGAAGGCCTAA
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