mRNA_H-paniculata_contig65408.14396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65408.14396.1
Unique NamemRNA_H-paniculata_contig65408.14396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65408.14396.1 vs. uniprot
Match: A0A6H5KA59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA59_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.890e-20
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 ELQSWDEECLAKHLDAINGSAISLEELQDLCLMNNESVVQVMDLAGVVNAPGLLTDVTQRCRLTLTDKNRLIFTQVG 231
            +L+ WD EC  KHLDAI  S  + ++L +  LM  E VV  +DLAG+V+APGL  D+TQRCR+  T+K RLIFTQ  
Sbjct:   21 DLEEWDIECATKHLDAIKDSVTTHDDLHEFTLMKGEKVVNALDLAGLVDAPGLFDDLTQRCRVVFTNKKRLIFTQAN 97
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BLAST of mRNA_H-paniculata_contig65408.14396.1 vs. uniprot
Match: D7FWP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.280e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   97 MNNESVVQVMDLAGVVNAPGLLTDVTQRCRLTLTDKNRLIFTQVG 231
            M  E  V V+DLAG+ +APGL   VTQ+CR+  T++ RL+FTQ  
Sbjct:    1 MKGEHAVNVLDLAGMEDAPGLYDTVTQQCRVVFTNEKRLVFTQAN 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65408.14396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KA59_9PHAE8.890e-2053.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWP8_ECTSI4.280e-651.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65408contigH-paniculata_contig65408:177..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.383208-CDS-H-paniculata_contig65408:176..4281622930767.383208-CDS-H-paniculata_contig65408:176..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65408 177..428 +
1691481443.2053525-CDS-H-paniculata_contig65408:176..4281691481443.2053525-CDS-H-paniculata_contig65408:176..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65408 177..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65408.14396.1prot_H-paniculata_contig65408.14396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65408 177..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65408.14396.1

>prot_H-paniculata_contig65408.14396.1 ID=prot_H-paniculata_contig65408.14396.1|Name=mRNA_H-paniculata_contig65408.14396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
ELQSWDEECLAKHLDAINGSAISLEELQDLCLMNNESVVQVMDLAGVVNA
PGLLTDVTQRCRLTLTDKNRLIFTQVGLRIQHR*
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mRNA from alignment at H-paniculata_contig65408:177..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65408.14396.1 ID=mRNA_H-paniculata_contig65408.14396.1|Name=mRNA_H-paniculata_contig65408.14396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig65408:177..428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTGCAGAGCTGGGATGAAGAGTGTCTCGCGAAACACCTCGACGCCAT
CAATGGTAGTGCCATCAGTCTGGAGGAGCTGCAGGACCTGTGCCTTATGA
ACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATGCA
CCGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACGGA
CAAAAACCGCCTGATATTTACCCAGGTAGGCTTGCGCATACAGCACAGGT
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig65408:177..428+

>mRNA_H-paniculata_contig65408.14396.1 ID=mRNA_H-paniculata_contig65408.14396.1|Name=mRNA_H-paniculata_contig65408.14396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig65408:177..428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTGCAGAGCTGGGATGAAGAGTGTCTCGCGAAACACCTCGACGCCAT
CAATGGTAGTGCCATCAGTCTGGAGGAGCTGCAGGACCTGTGCCTTATGA
ACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATGCA
CCGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACGGA
CAAAAACCGCCTGATATTTACCCAGGTAGGCTTGCGCATACAGCACAGGT
AGGAACTGCAGAGCTGGGATGAAGAGTGTCTCGCGAAACACCTCGACGCC
ATCAATGGTAGTGCCATCAGTCTGGAGGAGCTGCAGGACCTGTGCCTTAT
GAACAATGAGTCGGTGGTCCAGGTGATGGACCTTGCAGGGGTCGTGAATG
CACCGGGCTTGCTGACGGACGTCACCCAGCGATGTCGACTCACCCTCACG
GACAAAAACCGCCTGATATTTACCCAGGTAGGCTTGCGCATACAGCACAG
GTAG
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