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Homology
BLAST of mRNA_H-paniculata_contig6540.14395.1 vs. uniprot
Match: A0A6H5KS39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS39_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.790e-61 Identity = 270/678 (39.82%), Postives = 319/678 (47.05%), Query Frame = 3
Query: 204 MPDMDSPTAKNVSAIIEASGXXXXXXXXXXXAVKALSKRPREETSPVSGKRGRGENGDM---LMLQVPHVLTPALSVQATQGNTTPRSPP-PPPLLESPSKLNRA-SPFAVDSSTASXXXXXXXXTGFTAFPGLGTAKEQWSPCAKPDEASSTPDLSWGQLAAARRKTVPPPKALPSLAATDPVFHAALLRVLHRRGGETCPEAQGWRWSGDAPARFNHWPCALHPDLMNLLAYISAGEERVVLTGCDVRGRNGTDCCXXXXXXXXXXXXXXXXXXREPSPWRAVSSVRGDESSWAPPPAIMSSIGSPSTGVSVLAATAGGTTP-RAPTRARP---ALTPCSALRAPAGVAATPESRARSAAKSRGVRFATHDMTVVDTPDPIRGGSEKGMVSALGGLQSILSAAEQVRLVASLGASXXXXXXXXXXXXXXXGTDVSFSSRLRAVGAMGTLLIRGGGGVAGAAKHGEFEDYFDRFSSGGNSNRRNKSDNGCDEGSXXXXXXXXXXXXXXASKAANASACPVPTTNGSLTATGPDRNAENPAGAAATACQPTDKNSSRVKHSFGEPLSLRTSSSNSNVDVLDMIIDNSNKKKTDIVAGAREKNSTADAGVESEGGKRLAEDIAALIEVLQQMACSNSAPGELVLEAGWGPEHSNATAFYARELAMLCGKGAWGAGEGVG 2210
MPDMD+P +S I E XXXXXXXX V+ SKRPR+E SPV GKRGRG NGD+ L + VP + L ++ P SP PPL ESPSK+N+A SPFA SS A XXXXXXXX AS T +RRK P A PSL ATDP+FHAALLR+LHRR G+ C EA GWRW GD PARF+HWPCALHP +M+LLA +SA EE+VVLTGCD + + C XXXXXXXXXX R +PW + RG + AA AG TTP AP+ P A TP SALR S R +K+R VRF+THDM+VVDTPDP RGGS KGM+SALGGL+SILSAAE++R +A+ G + R R G L RGG ++E YFDRFS+ XXXXXXXXXXXXXX F PL K + ED AA + VL+++A ++APGE+ L GWGPEH NA AFYA ELA LCG +G VG
Sbjct: 1 MPDMDTP---QISGIFEERAPXXXXXXXXVVGVQQASKRPRDEGSPVRGKRGRGANGDISLSLKISVPATSSSPL----VPSSSLPASPLWVPPLCESPSKINQAPSPFASYSSGAXXXXXXXXXXXXXXXXXXXXXXXXX--------ASVT----------SRRKGRMPHAAPPSLGATDPIFHAALLRLLHRRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCDKK--HAESCNGXXXXXXXXXXEAAWRAPRPRTPW----AHRGRPA----------------------AAAAGVTTPIAAPSPLPPXASAQTPLSALRRSG-------SSRRLPSKNR-VRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAAERIRELAAGGPG-------------------NSGGRER-----GGLERRGGDDGR------QYEGYFDRFSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXEDFDAPLETEA--------------------------------------------KSVREDSAAFVTVLEEIANGDAAPGEVALAGGWGPEHRNAAAFYAEELAFLCGTKTGVSGREVG 518
BLAST of mRNA_H-paniculata_contig6540.14395.1 vs. uniprot
Match: D8LQ83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ83_ECTSI) HSP 1 Score: 167 bits (423), Expect = 1.290e-39 Identity = 125/245 (51.02%), Postives = 146/245 (59.59%), Query Frame = 3
Query: 699 PPKALPSLAATDPVFHAALLRVLHRRGGETCPEAQGWRWSGDAPARFNHWPCALHPDLMNLLAYISAGEERVVLTGCDVRGRNGTDCCXXXXXXXXXXXXXXXXXXREPSPWRAVSSVRGDESSWAPPPAIMSSIGSPSTGVSVLAATAGGTTPRAPTRARPALTPCS----ALRAPAGVAATPESRARSAAKSRGVRFATHDMTVVDTPDPIRGGSEKGMVSALGGLQSILSAAEQVRLVASLG 1421
P A PSL ATDP+FHAALLR+LH R G+ C EA GWRW GD PARF+HWPCALHP +M+LLA +SA EE+VVLTGCD + D C XXXXXXXXXXXX R P P R + RG + A AG TT ALR S R +K+R VRF+THDM+VVDTPDP RGGS KGM+SALGGL+SILSAAE++R +A+ G
Sbjct: 2 PHAAPPSLGATDPIFHAALLRLLHSRNGDHCAEAVGWRWRGDTPARFDHWPCALHPSVMDLLACVSASEEQVVLTGCD---KKHADSCHGXXXXXXXXXXXXEAAWRAPRP-RTPWAHRGGPA----------------------AVPAGATTXXXXXXXXXXXXXXXXXXXALRRSG-------SSRRLPSKNR-VRFSTHDMSVVDTPDPQRGGSAKGMMSALGGLESILSAAERIRELAAGG 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_005790.1 |
| Exons | 2 |
| Model size | 2222 |
| Cds size | 2019 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6540.14395.1 >prot_H-paniculata_contig6540.14395.1 ID=prot_H-paniculata_contig6540.14395.1|Name=mRNA_H-paniculata_contig6540.14395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=673bp
MPDMDSPTAKNVSAIIEASGGGVAAGGGGGAAVKALSKRPREETSPVSGK RGRGENGDMLMLQVPHVLTPALSVQATQGNTTPRSPPPPPLLESPSKLNR ASPFAVDSSTASSSSSSASSTGFTAFPGLGTAKEQWSPCAKPDEASSTPD LSWGQLAAARRKTVPPPKALPSLAATDPVFHAALLRVLHRRGGETCPEAQ GWRWSGDAPARFNHWPCALHPDLMNLLAYISAGEERVVLTGCDVRGRNGT DCCSGGGREEDETAFLPPPPPREPSPWRAVSSVRGDESSWAPPPAIMSSI GSPSTGVSVLAATAGGTTPRAPTRARPALTPCSALRAPAGVAATPESRAR SAAKSRGVRFATHDMTVVDTPDPIRGGSEKGMVSALGGLQSILSAAEQVR LVASLGASVSASGSHGGGKGVGEGTDVSFSSRLRAVGAMGTLLIRGGGGV AGAAKHGEFEDYFDRFSSGGNSNRRNKSDNGCDEGSDSDDNDGVGNTGTR ASKAANASACPVPTTNGSLTATGPDRNAENPAGAAATACQPTDKNSSRVK HSFGEPLSLRTSSSNSNVDVLDMIIDNSNKKKTDIVAGAREKNSTADAGV ESEGGKRLAEDIAALIEVLQQMACSNSAPGELVLEAGWGPEHSNATAFYA RELAMLCGKGAWGAGEGVGVLGS back to topmRNA from alignment at H-paniculata_contig6540:8209..10898- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6540.14395.1 ID=mRNA_H-paniculata_contig6540.14395.1|Name=mRNA_H-paniculata_contig6540.14395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2690bp|location=Sequence derived from alignment at H-paniculata_contig6540:8209..10898- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGCCGCCAGGCACGCATCGTCGTACTGTACTGTACTTCTGTCACGTCGAA
CGGCTGGGACTCGAGGACATCGGCTGCTGGCATATTCTTGCGAGGGCCAG
ATAGAGAAGGTGAACCCAGTTATTTCTTTGTGGTGGCTTCATCTCCCATA
AATTCTGACTGACTACAGAAAATACAGTAGCCAGTCTTCACCAACTGCTT
ACTGCTGACTCTCTCTCATGCCTTTTACTCCCATCCTTGACTGGAAGGTA
CCGAAGAACCCTTTAGTCTGGAAGTTGTTGGGCGAACCAAGCGTTGACTA
CCTTTCATGGCCGCACAAACCTTCATATCCCATCAACTGCGTATCACTTT
CTTTGGGAAGAGCTTTGTGAGCAACTGATTCGGTGGTGTACCGTTGAATA
ATTGCTGAATCGGCATGGCCTGCATTTTCAGCTGCTACTGTGCAGACAGT
ACTGTAGTAGCTACTGACGTGGATCGTATGTAGCCTTCTGTGGACATCCG
CTAAAGCCTCTACACCTGTGGCACCGACCACTGAAAAGTAACGTACACAC
ATATTGATACAACCCAATCACGTGCAGGGTCTCGGTGTTGCTGAACTCGA
GTGCGGCTATTCGCAAACACAAAAACGGAATACGTGACCCTCGCTTCACG
AGAAAAAGAAGACGTCGAAAAATGCCCGACATGGACTCGCCCACGGCAAA
AAATGTGTCGGCAATTATAGAAGCGAGCGGTGGCGGCGTAGCTGCAGGCG
GCGGCGGTGGGGCAGCAGTGAAGGCCCTCTCCAAGCGGCCGAGAGAAGAG
ACAAGTCCCGTCTCAGGGAAGCGCGGACGAGGCGAAAACGGGGATATGCT
GATGCTTCAGGTGCCTCATGTATTGACGCCCGCGCTGTCTGTCCAAGCAA
CACAAGGGAACACAACACCGCGTTCACCTCCACCACCACCTCTGCTGGAG
TCACCCAGCAAACTCAACAGGGCCTCGCCCTTCGCGGTCGATTCATCAAC
CGCGTCATCGTCATCATCCTCAGCGTCTTCTACTGGATTCACCGCTTTCC
CTGGTCTGGGCACGGCGAAAGAGCAGTGGTCTCCCTGTGCGAAGCCAGAC
GAAGCCTCATCTACCCCAGATCTCAGCTGGGGCCAGCTAGCGGCAGCGCG
GAGAAAGACCGTACCGCCGCCGAAAGCCCTGCCTTCGCTGGCGGCTACGG
ATCCAGTGTTCCACGCGGCGCTCCTGAGAGTCCTGCACCGTCGTGGGGGT
GAGACGTGCCCGGAAGCCCAGGGGTGGAGATGGAGTGGGGACGCGCCCGC
GAGGTTCAACCACTGGCCATGCGCGCTGCACCCGGATTTGATGAACCTCT
TGGCATATATTTCCGCAGGGGAAGAAAGGGTGGTTCTGACCGGGTGTGAC
GTGAGGGGCAGGAACGGGACTGACTGCTGCAGCGGTGGCGGCCGAGAAGA
AGACGAGACAGCTTTCCTGCCGCCGCCCCCGCCGCGAGAGCCGAGCCCCT
GGCGAGCAGTGTCATCCGTCCGCGGTGATGAGTCATCGTGGGCCCCCCCG
CCAGCGATCATGTCTTCGATCGGTTCTCCAAGTACAGGTGTTTCTGTTCT
GGCCGCCACTGCGGGCGGAACCACACCACGTGCGCCGACGCGAGCTCGCC
CGGCCTTGACTCCGTGTTCGGCGCTTCGGGCGCCGGCGGGCGTCGCTGCA
ACGCCTGAGTCGCGTGCGCGCTCTGCGGCGAAGAGCCGCGGCGTTCGGTT
TGCCACGCACGACATGACGGTCGTTGACACACCCGACCCAATTCGTGGTG
GTTCTGAGAAGGGCATGGTGAGCGCTCTCGGCGGGTTGCAGTCTATCCTA
TCTGCGGCTGAACAGGTCCGACTGGTGGCCTCCCTAGGGGCATCGGTATC
AGCGAGCGGTAGCCACGGCGGTGGCAAGGGCGTTGGCGAAGGGACTGATG
TATCTTTCTCATCCCGGCTGCGGGCAGTGGGCGCGATGGGGACACTTCTT
ATTAGAGGAGGAGGAGGAGTTGCAGGTGCTGCGAAGCATGGTGAGTTCGA
GGACTACTTCGACCGCTTTTCTAGTGGGGGGAACAGTAACAGGCGTAACA
AGAGCGATAACGGCTGCGATGAGGGGAGCGACTCCGATGACAATGATGGC
GTGGGTAATACTGGTACTCGAGCCTCGAAGGCAGCAAACGCTAGTGCTTG
TCCTGTTCCCACAACTAACGGGAGCCTCACTGCCACGGGTCCGGATAGAA
ACGCTGAAAACCCCGCTGGAGCAGCAGCAACAGCCTGCCAGCCTACAGAC
AAGAACAGCAGTCGAGTTAAACACTCCTTCGGGGAACCGTTATCGTTGCG
CACGAGCAGCAGCAACAGTAACGTAGACGTACTAGACATGATTATAGACA
ATAGCAACAAAAAGAAGACAGACATCGTGGCGGGGGCCCGGGAGAAGAAT
TCGACAGCGGATGCCGGCGTGGAATCGGAGGGAGGAAAGCGCTTGGCCGA
GGATATTGCCGCGTTGATCGAAGTGTTACAGCAGATGGCGTGCAGTAACT
CCGCACCAGGCGAGCTCGTGCTTGAAGCCGGGTGGGGACCCGAGCACAGC
AACGCCACCGCGTTCTACGCGAGAGAGTTGGCGATGCTTTGTGGGAAGGG
AGCTTGGGGCGCGGGAGAGGGAGTGGGGGTCTTGGGTTCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig6540:8209..10898- >mRNA_H-paniculata_contig6540.14395.1 ID=mRNA_H-paniculata_contig6540.14395.1|Name=mRNA_H-paniculata_contig6540.14395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4038bp|location=Sequence derived from alignment at H-paniculata_contig6540:8209..10898- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCCCGACATGGACTCGCCCACGGCAAAAAATGTGTCGGCAATTATAGA AGCGAGCGGTGGCGGCGTAGCTGCAGGCGGCGGCGGTGGGGCAGCAGTGA AGGCCCTCTCCAAGCGGCCGAGAGAAGAGACAAGTCCCGTCTCAGGGAAG CGCGGACGAGGCGAAAACGGGGATATGCTGATGCTTCAGGTGCCTCATGT ATTGACGCCCGCGCTGTCTGTCCAAGCAACACAAGGGAACACAACACCGC GTTCACCTCCACCACCACCTCTGCTGGAGTCACCCAGCAAACTCAACAGG GCCTCGCCCTTCGCGGTCGATTCATCAACCGCGTCATCGTCATCATCCTC AGCGTCTTCTACTGGATTCACCGCTTTCCCTGGTCTGGGCACGGCGAAAG AGCAGTGGTCTCCCTGTGCGAAGCCAGACGAAGCCTCATCTACCCCAGAT CTCAGCTGGGGCCAGCTAGCGGCAGCGCGGAGAAAGACCGTACCGCCGCC GAAAGCCCTGCCTTCGCTGGCGGCTACGGATCCAGTGTTCCACGCGGCGC TCCTGAGAGTCCTGCACCGTCGTGGGGGTGAGACGTGCCCGGAAGCCCAG GGGTGGAGATGGAGTGGGGACGCGCCCGCGAGGTTCAACCACTGGCCATG CGCGCTGCACCCGGATTTGATGAACCTCTTGGCATATATTTCCGCAGGGG AAGAAAGGGTGGTTCTGACCGGGTGTGACGTGAGGGGCAGGAACGGGACT GACTGCTGCAGCGGTGGCGGCCGAGAAGAAGACGAGACAGCTTTCCTGCC GCCGCCCCCGCCGCGAGAGCCGAGCCCCTGGCGAGCAGTGTCATCCGTCC GCGGTGATGAGTCATCGTGGGCCCCCCCGCCAGCGATCATGTCTTCGATC GGTTCTCCAAGTACAGGTGTTTCTGTTCTGGCCGCCACTGCGGGCGGAAC CACACCACGTGCGCCGACGCGAGCTCGCCCGGCCTTGACTCCGTGTTCGG CGCTTCGGGCGCCGGCGGGCGTCGCTGCAACGCCTGAGTCGCGTGCGCGC TCTGCGGCGAAGAGCCGCGGCGTTCGGTTTGCCACGCACGACATGACGGT CGTTGACACACCCGACCCAATTCGTGGTGGTTCTGAGAAGGGCATGGTGA GCGCTCTCGGCGGGTTGCAGTCTATCCTATCTGCGGCTGAACAGGTCCGA CTGGTGGCCTCCCTAGGGGCATCGGTATCAGCGAGCGGTAGCCACGGCGG TGGCAAGGGCGTTGGCGAAGGGACTGATGTATCTTTCTCATCCCGGCTGC GGGCAGTGGGCGCGATGGGGACACTTCTTATTAGAGGAGGAGGAGGAGTT GCAGGTGCTGCGAAGCATGGTGAGTTCGAGGACTACTTCGACCGCTTTTC TAGTGGGGGGAACAGTAACAGGCGTAACAAGAGCGATAACGGCTGCGATG AGGGGAGCGACTCCGATGACAATGATGGCGTGGGTAATACTGGTACTCGA GCCTCGAAGGCAGCAAACGCTAGTGCTTGTCCTGTTCCCACAACTAACGG GAGCCTCACTGCCACGGGTCCGGATAGAAACGCTGAAAACCCCGCTGGAG CAGCAGCAACAGCCTGCCAGCCTACAGACAAGAACAGCAGTCGAGTTAAA CACTCCTTCGGGGAACCGTTATCGTTGCGCACGAGCAGCAGCAACAGTAA CGTAGACGTACTAGACATGATTATAGACAATAGCAACAAAAAGAAGACAG ACATCGTGGCGGGGGCCCGGGAGAAGAATTCGACAGCGGATGCCGGCGTG GAATCGGAGGGAGGAAAGCGCTTGGCCGAGGATATTGCCGCGTTGATCGA AGTGTTACAGCAGATGGCGTGCAGTAACTCCGCACCAGGCGAGCTCGTGC TTGAAGCCGGGTGGGGACCCGAGCACAGCAACGCCACCGCGTTCTACGCG AGAGAGTTGGCGATGCTTTGTGGGAAGGGAGCTTGGGGCGCGGGAGAGGG AGTGGGGGTCTTGGGTTCAATGCCCGACATGGACTCGCCCACGGCAAAAA ATGTGTCGGCAATTATAGAAGCGAGCGGTGGCGGCGTAGCTGCAGGCGGC GGCGGTGGGGCAGCAGTGAAGGCCCTCTCCAAGCGGCCGAGAGAAGAGAC AAGTCCCGTCTCAGGGAAGCGCGGACGAGGCGAAAACGGGGATATGCTGA TGCTTCAGGTGCCTCATGTATTGACGCCCGCGCTGTCTGTCCAAGCAACA CAAGGGAACACAACACCGCGTTCACCTCCACCACCACCTCTGCTGGAGTC ACCCAGCAAACTCAACAGGGCCTCGCCCTTCGCGGTCGATTCATCAACCG CGTCATCGTCATCATCCTCAGCGTCTTCTACTGGATTCACCGCTTTCCCT GGTCTGGGCACGGCGAAAGAGCAGTGGTCTCCCTGTGCGAAGCCAGACGA AGCCTCATCTACCCCAGATCTCAGCTGGGGCCAGCTAGCGGCAGCGCGGA GAAAGACCGTACCGCCGCCGAAAGCCCTGCCTTCGCTGGCGGCTACGGAT CCAGTGTTCCACGCGGCGCTCCTGAGAGTCCTGCACCGTCGTGGGGGTGA GACGTGCCCGGAAGCCCAGGGGTGGAGATGGAGTGGGGACGCGCCCGCGA GGTTCAACCACTGGCCATGCGCGCTGCACCCGGATTTGATGAACCTCTTG GCATATATTTCCGCAGGGGAAGAAAGGGTGGTTCTGACCGGGTGTGACGT GAGGGGCAGGAACGGGACTGACTGCTGCAGCGGTGGCGGCCGAGAAGAAG ACGAGACAGCTTTCCTGCCGCCGCCCCCGCCGCGAGAGCCGAGCCCCTGG CGAGCAGTGTCATCCGTCCGCGGTGATGAGTCATCGTGGGCCCCCCCGCC AGCGATCATGTCTTCGATCGGTTCTCCAAGTACAGGTGTTTCTGTTCTGG CCGCCACTGCGGGCGGAACCACACCACGTGCGCCGACGCGAGCTCGCCCG GCCTTGACTCCGTGTTCGGCGCTTCGGGCGCCGGCGGGCGTCGCTGCAAC GCCTGAGTCGCGTGCGCGCTCTGCGGCGAAGAGCCGCGGCGTTCGGTTTG CCACGCACGACATGACGGTCGTTGACACACCCGACCCAATTCGTGGTGGT TCTGAGAAGGGCATGGTGAGCGCTCTCGGCGGGTTGCAGTCTATCCTATC TGCGGCTGAACAGGTCCGACTGGTGGCCTCCCTAGGGGCATCGGTATCAG CGAGCGGTAGCCACGGCGGTGGCAAGGGCGTTGGCGAAGGGACTGATGTA TCTTTCTCATCCCGGCTGCGGGCAGTGGGCGCGATGGGGACACTTCTTAT TAGAGGAGGAGGAGGAGTTGCAGGTGCTGCGAAGCATGGTGAGTTCGAGG ACTACTTCGACCGCTTTTCTAGTGGGGGGAACAGTAACAGGCGTAACAAG AGCGATAACGGCTGCGATGAGGGGAGCGACTCCGATGACAATGATGGCGT GGGTAATACTGGTACTCGAGCCTCGAAGGCAGCAAACGCTAGTGCTTGTC CTGTTCCCACAACTAACGGGAGCCTCACTGCCACGGGTCCGGATAGAAAC GCTGAAAACCCCGCTGGAGCAGCAGCAACAGCCTGCCAGCCTACAGACAA GAACAGCAGTCGAGTTAAACACTCCTTCGGGGAACCGTTATCGTTGCGCA CGAGCAGCAGCAACAGTAACGTAGACGTACTAGACATGATTATAGACAAT AGCAACAAAAAGAAGACAGACATCGTGGCGGGGGCCCGGGAGAAGAATTC GACAGCGGATGCCGGCGTGGAATCGGAGGGAGGAAAGCGCTTGGCCGAGG ATATTGCCGCGTTGATCGAAGTGTTACAGCAGATGGCGTGCAGTAACTCC GCACCAGGCGAGCTCGTGCTTGAAGCCGGGTGGGGACCCGAGCACAGCAA CGCCACCGCGTTCTACGCGAGAGAGTTGGCGATGCTTTGTGGGAAGGGAG CTTGGGGCGCGGGAGAGGGAGTGGGGGTCTTGGGTTCA back to top
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