mRNA_H-paniculata_contig654.14393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.740e-81 Identity = 213/541 (39.37%), Postives = 284/541 (52.50%), Query Frame = 1
Query: 1 WPALQTATYMTGVHNFVREKHRVQNLLAHELAQAEQEP---QDDDALNIELKGDITLYSLEQQRRRRAHKKSPGFLAAVRRLWNAAELTQSRITCSQGTPAEAQA--------VGATVGFDRPAQAAVDAPPLGIDKAVFIDLMVKVHYLIICPPVDRELAVQNASTDWTKDNGEDDDAARMTYDHFVGSIFEL---------------------------VDIWTETSEEQEYVEMANMIVEGITVEDDSGT----------------------EMKTAAA---------------AAVITTATMQERSDKPGILYRFKRDEDVIYDRRITKLFIYMEDLQEE----IDGSDDLADQVHISSASGSRARKTGEERNDLRGGAVSADGTVKGERKGEGPATSREHGPPR-GPSLSPRHPRASCAPPRTPGSCHPSTSSAAARSRLSHRGTASDAGNLLSVDRANSAIAKVYLSKMQVDGKMLQKDGDMSWAEKSRRKKHQRMDSFVLQYHIRQFGTKKLARRNLRQLCQSVSKLAMQHPRI 1383
W +LQ A+YMTG+H+FV+EKHR Q LA ELA+A+ E Q D L+GDI YS+++Q RR +KKSPGFLAAV +WNA T++ + G P+ A A AT G VD GID+A F+ LMVKVHYLIICPPV+ + A +NA DW KDN + M+YD FV SIFEL VDIWTET E EY +A MI +G+T E D+ T E K + A A+ + ++++ + P Y K DE+++YD IT+ +YMED++E+ G ++++ ++ + G + +LRGGA G G +K P R G + G S SP A + AA S L+ + S LLS +R N+AIAK+Y SKMQVD K+L +DG +SW +KSRRKK QRMD FVLQ+H+RQFGTKKLARRNL QLC+S++KLA +PRI
Sbjct: 82 WRSLQYASYMTGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLAAVGMIWNA---TRAEMISRLGEPSIAAAPASGPSPPAAATQGAGGDGDGVVDQDAGGIDEAAFVCLMVKVHYLIICPPVNPDAAYKNARNDWAKDNASG--SPTMSYDLFVASIFELANDLLKSLERSCSPMWTDCPHQEEGGVVDIWTETLEASEYDALAMMIAKGVTTEVDTPTQTRPDVEDGRGSVAGLMASVTDERKNSLARLTRRVYPRIPNHLPASCVVSSSLPRKQTTPRRRYVLKADEEIVYDPYITREPVYMEDIEEQDGGTAGGGENVSRGIYEKGXXXXXXXEAGGD--ELRGGA----GAGAGRKKPRKPGQMRFGGARKTGSSGSPDRDYAD------------DGGAGAAVSSLAQQAGRSPKVALLSAERVNAAIAKIYYSKMQVDRKLLIRDGSLSWVDKSRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRI 599
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.690e-73 Identity = 192/475 (40.42%), Postives = 249/475 (52.42%), Query Frame = 1
Query: 1 WPALQTATYMTGVHNFVREKHRVQNLLAHELAQAEQEP---QDDDALNIELKGDITLYSLEQQRRRRAHKKSPGFLAAVRRLWNAAELTQSRITCSQGTPAEAQAVGATVGFDRPAQAAVDAPPLGIDKAVFIDLMVKVHYLIICPPVDRELAVQNASTDWTKDNGEDDDAARMTYDHFVGSIFELVDIWTETSEEQEYVEMANMIVEGITVEDDSGTEM---------KTAAAAAVITTATMQERSDKPGILYRFKRDEDVIYDRRITKLFIYMEDLQEEIDGSDDLADQVHISSASGSRARKTGEERNDLRGGAVSADGTVKGE-RKGEGPATSREHGPPRGPSLSPRHPRASCAPPRTPG-SCHPSTSSAAARSRLSHRGTASDAGNLLSVDRANSAIAKVYLSKMQVDGKMLQKDGDMSWAEKSRRKKHQRMDSFVLQYHIRQFGTKKLARRNLRQLCQSVSKLAMQHPRI 1383
W +LQ A+YM G+H+FV+EKHR Q LA ELA+A+ E Q D L+GDI YS+++Q RR +KKSPGFL+AV +WNA T++ + G E V VD GID+A F+ LMVKVHYLIICPPVD IWTET E EY +A MI +G+T E D+ TE A + A +T ER P Y K DE ++YD IT+ +YMED++E+ DG + DQ ++ G A + G ++ GE R G G T R+ PR P PP +PG C + + AA S L+ + S LLS +R N+ IAK+Y SKMQVD K+L +DG +SW +K RRKK QRMD FVLQ+H+RQFGTKKLARRNL QLC+S++KLA +PRI
Sbjct: 74 WRSLQYASYMAGMHHFVKEKHRAQGYLAAELAKADHEMGEGQQDPTKRPTLEGDIEHYSVQKQITRRLNKKSPGFLSAVGMIWNA---TRAEMASRMGGGGEGGGV-------------VDQDADGIDEAAFVCLMVKVHYLIICPPVD---------------------------------------IWTETLEASEYDALAMMIAKGVTTEVDAPTETGPDVEDGRGSVAGSVASVT----GERKKSPERRYVLKADEGIVYDPNITREPVYMEDIEEQADGYES-GDQDGGTAGGGENASR-GRDKXXXXXXXXXXTEAGGGELRSGAGAGTGRKA--PRKPGQKRFGGARKTGPPGSPGRDCADDSGAGAAVSSLAQQAGRSSKVALLSAERVNATIAKIYFSKMQVDRKLLTRDGSLSWVDKCRRKKDQRMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI 485
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: D7FX46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX46_ECTSI) HSP 1 Score: 184 bits (467), Expect = 9.650e-49 Identity = 84/155 (54.19%), Postives = 117/155 (75.48%), Query Frame = 1
Query: 1417 VIQTKPHRERLLEFRPFICSDFVVPLLRRLCPKDEKLDRLWMGNGKVPLPVASSDFLQAIREVCPHVPPECPAMIGFTIQLGRLMDQLERR-QQEGIQRPRARRGSIDLDEGLLTAMPLWSCEEEYLIMQVTLRSIGVLTRWLRRSRLQQQRGES 1878
++Q +P+ ER+ EFRPF CSDF++P+ +LCP EK+DR W+GN KVP+ V DF+QA++EVCP VP ECPAM+ F IQ+GRL + L+ + ++E + +P A R S+DLDE L AMP+WS EEEYLIM+VTL +I +L RW+RR R ++ GE+
Sbjct: 1 MVQARPYAERVAEFRPFACSDFIIPMFTKLCPPGEKMDR-WLGNAKVPVAVTMHDFMQAVKEVCPDVPAECPAMVVFLIQIGRLAESLDDQCRREKLNKPNAGRPSVDLDEALRVAMPVWSAEEEYLIMKVTLNAIDILRRWMRRPRRRRAAGET 154
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A6H5KDS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS0_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.300e-43 Identity = 85/171 (49.71%), Postives = 121/171 (70.76%), Query Frame = 1
Query: 1369 QHPRIEVFADVVGVPAVIQTKPHRERLLEFRPFICSDFVVPLLRRLCPKDEKLDRLWMGNGKVPLPVASSDFLQAIREVCPHVPPECPAMIGFTIQLGRLMDQLERR-QQEGIQRPRARRGSIDLDEGLLTAMPLWSCEEEYLIMQVTLRSIGVLTRWLRRSRLQQQRGES 1878
+ PR + FA+++GVP ++Q +P+ ER++EFRPF CSDF++P+L +LCP EK+D L ++SS +LQ +CP VP ECPAM+ F IQ+GRL + L+ R ++E + +P A R S+DLDE L AMP+WS EEEYLIM+VTL +I VL RW+RR R ++ GE+
Sbjct: 30 RRPREQAFAELIGVPIMVQARPYVERVVEFRPFACSDFIIPVLTKLCPPGEKMDSLPS--------ISSSVWLQ----ICPDVPAECPAMVMFLIQIGRLAESLDDRCRREKLNKPNAGRPSVDLDEALRIAMPVWSAEEEYLIMKVTLNAIDVLRRWMRRPRRRRAAGET 188
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A2R5GSF5_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSF5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.150e-9 Identity = 71/303 (23.43%), Postives = 127/303 (41.91%), Query Frame = 1
Query: 1126 NLLSVDRANSAIAKVYLSKMQVDGKMLQKDGDMSWAEKSRRKKHQRMDSFVLQYHIRQFGTKKLARRNLRQLCQSVSKLAMQHPRI-EVFADVVGVPAVIQTKPHRERLLEFRPFICSDFVVPLLRRLCPKDEKLDRLWMGNGKVP---------------------LPVASSDFLQAIREVCPHVPPECPAMIGFTIQLGRLMDQLERRQQEGI-----QRPRARRGS----------------------------IDLDEGLLTAMPLWSCEEEYLIMQVTLRSIGVLTRWLRRSRLQQQR 1869
+LL+ A++ I ++Y +K + D K K ++ R D FVL+ HI QFG++K+A+RNL++L +V A Q I +FA + GV I H L + P + SD+ +P L R+ D K+ ++++ V L S F +VC H PPE A++ L ++ RR +G+ + R R+G +D+ E +L A+P+W + ++ + + + + RW + ++++ R
Sbjct: 412 SLLTRAHAHATIGRLYQAKYESDLKSRSKGLQLT-----------RFDKFVLEQHIMQFGSRKMAKRNLKRLFNTVRYHADQGDAIMRMFAILCGVD--IAPSRHDVSLTTYDPHLASDYYLPTLVRILDGDSKVAQVFVQGKTVGKQSANKSSALGCNHGLETQECLLTLSLTFQLTTADVCRHTPPESSALVELIHDLHKIRG---RRDGDGVGGSFARSQRTRQGRKVMMRMSGPVLDALGQRGLSTSLDQNLLVDVHEAMLLALPVWVADRKWSTLCHFVLAGKTIARWFKLAKMRVPR 698
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A7S2WVF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVF8_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 6.810e-8 Identity = 49/171 (28.65%), Postives = 76/171 (44.44%), Query Frame = 1
Query: 154 ITLYSLEQQRRRRAHKKSPGFLAAVRRLWNAAELTQSRITCSQGTPAEAQAVGATVGFDRPAQAAVDAPPLGIDKAVFIDLMVKVHYLIICPPVDRELAVQNASTDWTKD-NGEDDDAARMTYDHFVGSIFELVDIWTETSEEQEYVEMANMIVEGITVEDDSGTEMKTAA 663
+ LYS E Q +RR KK P F V LW L Q T S G ++ + K+ L++ PP+ +Q++ DW +D G+D R+TY+ F +IF+L DIWT+T E ++Y M ++ G+T+ D + M A+
Sbjct: 38 LDLYSDESQMKRRMCKKDPHFKRLVDELW---ALVQDEATESLG------------------------------MGGYMKMNSKLIRLLMPPPLTESYIIQHSKEDWAQDAQGKD----RLTYNDFFQAIFQLTDIWTDTCEVEDYTNMLERMILGVTIIPDDLSAMMNAS 171
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A7S2CF38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF38_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.440e-7 Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 1
Query: 124 DALNIELKGDITLYSLEQQRRRRAHKKSPGFLAAVRRLWNAAELTQSRITCSQGTPAEAQAVGATVGFDRPAQAAVDAPPLGIDKAVFIDLMVKVHYLIICPPVDRELAVQNASTDWTKDNGEDDDAARMTYDHFVGSIFELVDIWTETSEEQEY 588
D ++ +GD+ +YS + Q +R K+SP +A ++ LW A +QG A+ D+ +I ++ K H LI+ PP + + A DW +D+ A+ ++Y+ F SI++LVD WTET+EE+EY
Sbjct: 33 DIPRVQDQGDVEMYSYKSQGKRSKLKRSPQIVALIQELWGLA---------AQGADAQ-------------------------DQKNYITMIRKFHLLIV-PPGSEDDIEKVAQDDWERDSKG---ASTLSYELFFESIWQLVDTWTETTEEEEY 149
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Match: A0A7S2XUW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUW8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 7.350e-7 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 415 LIICPPVDRELAVQNASTDWTKDNGEDDDAARMTYDHFVGSIFELVDIWTETSEEQEYVEMANMIVEGIT 624
L++ PPVD + A+ NA DW +D G + A M+ + F S+FELVDIWTET E +EY + ++I G+T
Sbjct: 1 LMVPPPVDIDKALVNADDDWQRDVGPE--AEEMSEEQFKDSMFELVDIWTETIELEEYCRLLDIITVGVT 68 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig654.14393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig654.14393.1 >prot_H-paniculata_contig654.14393.1 ID=prot_H-paniculata_contig654.14393.1|Name=mRNA_H-paniculata_contig654.14393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=755bp MTGVHNFVREKHRVQNLLAHELAQAEQEPQDDDALNIELKGDITLYSLEQback to top mRNA from alignment at H-paniculata_contig654:8415..24907- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig654.14393.1 ID=mRNA_H-paniculata_contig654.14393.1|Name=mRNA_H-paniculata_contig654.14393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16493bp|location=Sequence derived from alignment at H-paniculata_contig654:8415..24907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig654:8415..24907- >mRNA_H-paniculata_contig654.14393.1 ID=mRNA_H-paniculata_contig654.14393.1|Name=mRNA_H-paniculata_contig654.14393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4530bp|location=Sequence derived from alignment at H-paniculata_contig654:8415..24907- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |