mRNA_H-paniculata_contig6537.14390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6537.14390.1
Unique NamemRNA_H-paniculata_contig6537.14390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.000e-56
Identity = 97/103 (94.17%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LFLLTALLPVAESFGFA+ELLKKTSGAGTTPQLAFSHWEV+++DPFWRPQT EEREDEGEEGHLSVTNI+RQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK
Sbjct: 1031 LFLLTALLPVAESFGFADELLKKTSGAGTTPQLAFSHWEVMELDPFWRPQTEEEREDEGEEGHLSVTNIARQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 1133
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A836CQ82_9STRA (EFG_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ82_9STRA)

HSP 1 Score: 147 bits (372), Expect = 7.180e-42
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEG-HLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LFLL ALLPVAESFGFA ELLKKTSGA TTPQL FSHW  + +DPFW+PQT EERE+EGEEG HLS+ NI+R+Y+D  RKRKG+ T +KIVVAAEKQR L+  K
Sbjct:  186 LFLLEALLPVAESFGFAEELLKKTSGAATTPQLRFSHWGRLALDPFWKPQTEEEREEEGEEGGHLSMGNIARRYIDMTRKRKGMPTAEKIVVAAEKQRNLSLKK 289
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S3XN80_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN80_HETAK)

HSP 1 Score: 143 bits (360), Expect = 5.460e-41
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LF+L A LPVAESFGFA ELL +TSGA T PQLAFSHWEVID+DPFWRP T EERED GEE  +  +N +R+Y+D VR RKGLAT+ +IVVAAEKQRTL R K
Sbjct:  109 LFVLGAALPVAESFGFAGELLTRTSGAATAPQLAFSHWEVIDLDPFWRPTTEEEREDLGEE--VRESNFARRYIDAVRARKGLATDKRIVVAAEKQRTLARKK 209
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S3XMW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMW0_HETAK)

HSP 1 Score: 143 bits (360), Expect = 9.270e-39
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LF+L A LPVAESFGFA ELL +TSGA T PQLAFSHWEVID+DPFWRP T EERED GEE  +  +N +R+Y+D VR RKGLAT+ +IVVAAEKQRTL R K
Sbjct:  336 LFVLGAALPVAESFGFAGELLTRTSGAATAPQLAFSHWEVIDLDPFWRPTTEEEREDLGEE--VRESNFARRYIDAVRARKGLATDKRIVVAAEKQRTLARKK 436
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S2G103_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G103_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.060e-35
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTN---ISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LF +TALLPV E+ GF+  LLKKTSGA TTPQL+ SHWE ++ DPFWRP T+EERE+EGEE H  V N   ++R+ +D VR+RKGL   +KIVVAAEKQRTL+R K
Sbjct:   92 LFSITALLPVTEAQGFSAALLKKTSGAATTPQLSLSHWETLERDPFWRPTTAEEREEEGEE-HTIVGNDHNVARKLIDAVRRRKGLPVEEKIVVAAEKQRTLSRAK 196
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S2RBI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBI4_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.120e-35
Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSV-----TNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LFL+TA +PV ES GF+ ELL KTSGA T PQL+FSHWE + +DPFWRP T +ERE+ GE  +++      TNI+R+ +D VR+RKGL   +KIV AAEKQRTLTRNK
Sbjct:   55 LFLITAQIPVVESIGFSQELLDKTSGAATAPQLSFSHWESMSVDPFWRPTTEDEREEMGE-SYMTYETDRETNIARRNIDAVRRRKGLMVEEKIVAAAEKQRTLTRNK 161
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S2AZY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZY7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.320e-35
Identity = 63/105 (60.00%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHL----SVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTR 303
            LFL+TALLPV ES GF++ELL +TSGA TTPQL+FSHW+ I++ PFWRP T +ERE+ GE         +TN++R+++D VR+RKGL   +KIVV AEKQRTL R
Sbjct:   52 LFLITALLPVVESLGFSSELLGRTSGAATTPQLSFSHWDAIEVSPFWRPTTEDEREEMGESYSTYDQDRLTNLARRHIDNVRRRKGLLVEEKIVVDAEKQRTLGR 156
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: M4B6D4_HYAAE (EFG_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6D4_HYAAE)

HSP 1 Score: 117 bits (294), Expect = 9.840e-32
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTR 303
            LF + A LPV ESFGFA +LL  TSGA + PQL FSHW +IDMDPF++PQT EERED GE   +   N  R Y++ VRKRKGL+ ++KIVV AEKQRTL R
Sbjct:   51 LFTVKAHLPVVESFGFATDLLIHTSGAASNPQLIFSHWSIIDMDPFFQPQTEEEREDYGE--WVYERNYVRMYIEVVRKRKGLSRDEKIVVHAEKQRTLKR 149
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: T0RFQ7_SAPDV (Elongation factor 2 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RFQ7_SAPDV)

HSP 1 Score: 115 bits (288), Expect = 5.840e-31
Identity = 63/103 (61.17%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    1 LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTRNK 309
            LF + A LPV ESFGFA ELLK TSG  + PQL F HW V+  DPF++P T EERED GE   ++  N  R+ L+GVRKRKGL+  +KIVV AEKQRTL RNK
Sbjct:   38 LFSVEAYLPVVESFGFATELLKNTSGNASNPQLLFDHWAVMPDDPFFQPTTDEEREDYGEA--IAEHNAVRKLLEGVRKRKGLSREEKIVVHAEKQRTLGRNK 138
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BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Match: A0A7S1TQR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.390e-31
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:    4 FLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQTSEEREDEGEEGHLSV-------TNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLTR 303
            F+L A LPVAESFG A ELL+ TSGA TTPQLAF+ W V+D+DPFW+P++ EEREDEGE  H++         NI+R Y+D VRKRKGL T   +VV   KQRTL R
Sbjct:  259 FMLRATLPVAESFGLATELLRATSGAATTPQLAFAEWRVLDVDPFWKPRSEEEREDEGE-AHVATHNRGGARKNIARGYVDLVRKRKGLPTETLVVVDGSKQRTLAR 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6537.14390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE8.000e-5694.17EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CQ82_9STRA7.180e-4273.08EFG_C domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3XN80_HETAK5.460e-4171.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XMW0_HETAK9.270e-3971.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G103_9STRA1.060e-3564.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RBI4_9STRA1.120e-3561.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2AZY7_9STRA8.320e-3560.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
M4B6D4_HYAAE9.840e-3262.38EFG_C domain-containing protein n=1 Tax=Hyaloperon... [more]
T0RFQ7_SAPDV5.840e-3161.17Elongation factor 2 n=1 Tax=Saprolegnia diclina (s... [more]
A0A7S1TQR1_9STRA6.390e-3159.81Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6537contigH-paniculata_contig6537:1857..2800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue4.9e-48
Seed eggNOG ortholog2880.D7G3I9
Preferred nameEFTUD1
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0467@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.647609-CDS-H-paniculata_contig6537:1856..20511622930766.647609-CDS-H-paniculata_contig6537:1856..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6537 1857..2051 -
1691481442.8697999-CDS-H-paniculata_contig6537:1856..20511691481442.8697999-CDS-H-paniculata_contig6537:1856..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6537 1857..2051 -
1622930766.6651313-CDS-H-paniculata_contig6537:2683..28001622930766.6651313-CDS-H-paniculata_contig6537:2683..2800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6537 2684..2800 -
1691481442.8811243-CDS-H-paniculata_contig6537:2683..28001691481442.8811243-CDS-H-paniculata_contig6537:2683..2800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6537 2684..2800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6537.14390.1prot_H-paniculata_contig6537.14390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6537 1857..2800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6537.14390.1

>prot_H-paniculata_contig6537.14390.1 ID=prot_H-paniculata_contig6537.14390.1|Name=mRNA_H-paniculata_contig6537.14390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
LFLLTALLPVAESFGFANELLKKTSGAGTTPQLAFSHWEVIDMDPFWRPQ
TSEEREDEGEEGHLSVTNISRQYLDGVRKRKGLATNDKIVVAAEKQRTLT
RNK*
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mRNA from alignment at H-paniculata_contig6537:1857..2800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6537.14390.1 ID=mRNA_H-paniculata_contig6537.14390.1|Name=mRNA_H-paniculata_contig6537.14390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at H-paniculata_contig6537:1857..2800- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTCTTGCTCACCGCGTTACTTCCAGTGGCCGAGTCGTTTGGATTCGC
TAACGAGCTCCTCAAGAAGACGTCAGGAGCAGGCACAACTCCGCAGCTAG
CCTTCTCGCATTGGGAGGTAAGCTATTCTGTACCTCATGTTTTCACAGCA
AAATGGAGGGAGAGACGGAGAGTACCCATATGTACCAAGGAACTATATGG
AGTATGTAGCCATCTGATACCTTGTAGGTGCAAAAGTTAGCTAAATATAA
CGTACATCCTTGGCTCACCTGTGATTATGATCAGCGCAACGGTGACCACC
TTGAGCAACTGTTTTGATACTGAAAACTGTACTAGACGCGGTATTCATTG
TTGACTATGCTGCGTGATTACCCTGTATTGAGACGGGATGCTACCGACGG
CAACAGAGGCATACTTGTGGGGACTGCGCAAAATTTACGTGACACGTGAA
CTTCGGCACACATGCCACGTGCTGTATACGTCGCACTTGAGACTAGTAGT
ACACCAGTTCGCCAGTGGGGTCTAGGACCCCGCTCTACACCCACCTGTAG
CCAGGTCAGTAGCGTGCCTAACTCAGCCCCCCTGTTTGACCTCCGTCAAT
CAGATCCGATCCCCTATGACTGCCATCATCATCACTGTAGCGCATCAAGT
ACTACTGGTAATTACAGGAGTACCGAAGTATGACTGTTGCTTATTGCCTA
TTGCCTATTGTAAAGTGCCCCCCCCCCCCCCCCCCCCCCATGACGCCAGG
TAATTGATATGGACCCATTTTGGCGGCCGCAGACGAGCGAGGAGCGCGAG
GACGAGGGGGAAGAGGGGCACCTTAGCGTTACTAACATTTCACGGCAATA
TTTGGACGGAGTTCGCAAGCGAAAGGGACTCGCCACCAACGACAAGATCG
TGGTGGCCGCTGAGAAGCAGCGCACGTTGACGAGAAATAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6537:1857..2800-

>mRNA_H-paniculata_contig6537.14390.1 ID=mRNA_H-paniculata_contig6537.14390.1|Name=mRNA_H-paniculata_contig6537.14390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig6537:1857..2800- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTCTTGCTCACCGCGTTACTTCCAGTGGCCGAGTCGTTTGGATTCGC
TAACGAGCTCCTCAAGAAGACGTCAGGAGCAGGCACAACTCCGCAGCTAG
CCTTCTCGCATTGGGAGCTGTTCTTGCTCACCGCGTTACTTCCAGTGGCC
GAGTCGTTTGGATTCGCTAACGAGCTCCTCAAGAAGACGTCAGGAGCAGG
CACAACTCCGCAGCTAGCCTTCTCGCATTGGGAGGTAATTGATATGGACC
CATTTTGGCGGCCGCAGACGAGCGAGGAGCGCGAGGACGAGGGGGAAGAG
GGGCACCTTAGCGTTACTAACATTTCACGGCAATATTTGGACGGAGTTCG
CAAGCGAAAGGGACTCGCCACCAACGACAAGATCGTGGTGGCCGCTGAGA
AGCAGCGCACGTTGACGAGAAATAAGTAAGTAATTGATATGGACCCATTT
TGGCGGCCGCAGACGAGCGAGGAGCGCGAGGACGAGGGGGAAGAGGGGCA
CCTTAGCGTTACTAACATTTCACGGCAATATTTGGACGGAGTTCGCAAGC
GAAAGGGACTCGCCACCAACGACAAGATCGTGGTGGCCGCTGAGAAGCAG
CGCACGTTGACGAGAAATAAGTAA
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