mRNA_H-paniculata_contig65316.14386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65316.14386.1
Unique NamemRNA_H-paniculata_contig65316.14386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: D7FPK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.860e-35
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QVCVIYRG+ L DLCAG QGP+DPRPV PST+FCVFSAGKAVCSTA+H+L DRGLL  YDQ+L+E WPE+A NGK +TTVR
Sbjct:  547 QVCVIYRGQTLVDLCAGTQGPVDPRPVRPSTLFCVFSAGKAVCSTAVHLLADRGLL-RYDQRLSELWPEFASNGKLTTTVR 626          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.870e-35
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QVCVIYRG+ L DLCAG QGP+DPRPV PST+FCVFSAGKAVCSTA+H+L DRGLL  YDQ+L+E WPE+A NGK +TTVR
Sbjct:  987 QVCVIYRGQTLVDLCAGTQGPVDPRPVRPSTLFCVFSAGKAVCSTAVHLLADRGLL-RYDQRLSELWPEFATNGKLNTTVR 1066          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7S3XWD7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWD7_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 4.610e-20
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QV V   G  L   CAG QGP+DPRPVTP T+FC  S  KAV +TA+H L DRG +  YD  +A +WP +A NGK   TVR
Sbjct:  528 QVAVRRHGVPLVATCAGTQGPVDPRPVTPRTLFCALSVSKAVLATAVHALADRGKV-DYDAPVAAYWPAFARNGKAGVTVR 607          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7S3XWC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWC8_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 4.620e-20
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QV V   G  L   CAG QGP+DPRPVTP T+FC  S  KAV +TA+H L DRG +  YD  +A +WP +A NGK   TVR
Sbjct:  528 QVAVRRHGVPLVATCAGTQGPVDPRPVTPRTLFCALSVSKAVLATAVHALADRGKV-DYDAPVAAYWPAFARNGKAGVTVR 607          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A835ZC02_9STRA (Beta-lactamase/transpeptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC02_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.640e-20
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QVCV   G  L D CAG QGPIDPRPVTP T+F  FS  K V + A+H L DRG   + D  LA FWP +A  GK +TT+R
Sbjct:  494 QVCVFRHGACLVDTCAGAQGPIDPRPVTPDTLFPAFSVTKVVAAAALHALIDRGAA-ALDTPLASFWPAFAKRGKGATTLR 573          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7X9AZU7_9BACT (Beta-lactamase family protein n=1 Tax=Oligosphaeraceae bacterium TaxID=2699751 RepID=A0A7X9AZU7_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.240e-19
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTV 240
            Q+ +   G+ +ADLCAG   P    PVTP T+F +FS GK + +TA HMLK+R +   Y   +AEFWPEYACNGKE T +
Sbjct:   25 QLVIYEHGKLVADLCAGYADPAHSIPVTPKTLFPIFSVGKGISATAFHMLKER-IGFDYHTPVAEFWPEYACNGKEETQI 103          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7X8XAE8_9BACT (Beta-lactamase family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X8XAE8_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 1.700e-18
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTV 240
            Q+ +   G+ +ADLCAG   P     VTP T+F +FS GK + +TA HMLK+R +   Y   +AEFWPEYACNGKE T +
Sbjct:   25 QLVIYEHGKLVADLCAGYADPAHTVSVTPKTLFPIFSVGKGIATTAFHMLKER-IGFDYHMPVAEFWPEYACNGKEETKL 103          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: F2TZZ3_SALR5 (Serine/threonine protein kinase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZZ3_SALR5)

HSP 1 Score: 87.0 bits (214), Expect = 3.710e-18
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTV 240
            QV   ++G+ + + CAG  G  DPR VTPST+F  FS  K V +TA+H+L D+ LL  Y  ++   WPEYACNGKE TT+
Sbjct: 1086 QVAAYHQGQCVVNACAGTMGAADPRAVTPSTLFNCFSVMKGVTATALHVLADQRLL-QYSDRVGAHWPEYACNGKEETTI 1164          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7X7QR81_9BACT (Beta-lactamase family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7QR81_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-17
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNGKESTTVR 243
            QV V   G  + D CAG  G  +  PV   T+F +FSAGK V +TA   L +RGL+   DQK+ E WPEYACNGKE TTVR
Sbjct:   26 QVAVFLDGELVVDACAGVTGDGNGTPVDSRTLFPIFSAGKGVVTTAFLRLVERGLV-ELDQKVGEIWPEYACNGKEETTVR 105          
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Match: A0A7S2GHH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHH8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.360e-17
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHMLKDRGLLLSYDQKLAEFWPEYACNG--KESTTVR 243
            QVCV ++G  + +L  GE GP+DPRP+TP+T+F  FS GKA+ +  +H++ D+G + S + K+ ++WP +      K+  TVR
Sbjct:   51 QVCVYHKGEVVINLSGGECGPVDPRPITPNTLFNSFSCGKALSALLVHVMVDKGWIQSLEDKVTKYWPVFGAGNSKKQQCTVR 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65316.14386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK9_ECTSI1.860e-3576.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBB7_9PHAE1.870e-3576.54FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3XWD7_HETAK4.610e-2054.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWC8_HETAK4.620e-2054.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZC02_9STRA8.640e-2055.56Beta-lactamase/transpeptidase-like protein n=1 Tax... [more]
A0A7X9AZU7_9BACT1.240e-1951.25Beta-lactamase family protein n=1 Tax=Oligosphaera... [more]
A0A7X8XAE8_9BACT1.700e-1850.00Beta-lactamase family protein n=1 Tax=Lentisphaera... [more]
F2TZZ3_SALR53.710e-1850.00Serine/threonine protein kinase n=1 Tax=Salpingoec... [more]
A0A7X7QR81_9BACT1.770e-1753.09Beta-lactamase family protein n=1 Tax=Lentisphaera... [more]
A0A7S2GHH8_9STRA3.360e-1740.96Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65316contigH-paniculata_contig65316:271..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.8e-30
Seed eggNOG ortholog2880.D7FPK9
KEGG koko:K08869,ko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
EC3.6.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03000,ko03036
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.2211914-CDS-H-paniculata_contig65316:270..5131622930766.2211914-CDS-H-paniculata_contig65316:270..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65316 271..513 +
1691481442.7288637-CDS-H-paniculata_contig65316:270..5131691481442.7288637-CDS-H-paniculata_contig65316:270..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65316 271..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65316.14386.1prot_H-paniculata_contig65316.14386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65316 271..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65316.14386.1

>prot_H-paniculata_contig65316.14386.1 ID=prot_H-paniculata_contig65316.14386.1|Name=mRNA_H-paniculata_contig65316.14386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
QVCVIYRGRKLADLCAGEQGPIDPRPVTPSTVFCVFSAGKAVCSTAIHML
KDRGLLLSYDQKLAEFWPEYACNGKESTTVR
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mRNA from alignment at H-paniculata_contig65316:271..513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65316.14386.1 ID=mRNA_H-paniculata_contig65316.14386.1|Name=mRNA_H-paniculata_contig65316.14386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig65316:271..513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTGCGTGATTTACCGCGGCCGCAAGCTAGCAGACCTGTGTGCGGG GGAGCAAGGGCCTATTGACCCTCGCCCCGTGACTCCGTCCACGGTGTTTT GTGTCTTCAGCGCTGGGAAAGCTGTGTGCTCCACGGCCATTCACATGCTC AAGGATCGCGGTCTCCTGCTGAGCTACGACCAAAAACTCGCCGAGTTCTG GCCAGAGTATGCGTGCAACGGAAAGGAGAGTACGACGGTACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig65316:271..513+

>mRNA_H-paniculata_contig65316.14386.1 ID=mRNA_H-paniculata_contig65316.14386.1|Name=mRNA_H-paniculata_contig65316.14386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig65316:271..513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTGCGTGATTTACCGCGGCCGCAAGCTAGCAGACCTGTGTGCGGG
GGAGCAAGGGCCTATTGACCCTCGCCCCGTGACTCCGTCCACGGTGTTTT
GTGTCTTCAGCGCTGGGAAAGCTGTGTGCTCCACGGCCATTCACATGCTC
AAGGATCGCGGTCTCCTGCTGAGCTACGACCAAAAACTCGCCGAGTTCTG
GCCAGAGTATGCGTGCAACGGAAAGGAGAGTACGACGGTACGTCAGGTGT
GCGTGATTTACCGCGGCCGCAAGCTAGCAGACCTGTGTGCGGGGGAGCAA
GGGCCTATTGACCCTCGCCCCGTGACTCCGTCCACGGTGTTTTGTGTCTT
CAGCGCTGGGAAAGCTGTGTGCTCCACGGCCATTCACATGCTCAAGGATC
GCGGTCTCCTGCTGAGCTACGACCAAAAACTCGCCGAGTTCTGGCCAGAG
TATGCGTGCAACGGAAAGGAGAGTACGACGGTACGT
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