mRNA_H-paniculata_contig6531.14385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6531.14385.1
Unique NamemRNA_H-paniculata_contig6531.14385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6531.14385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6531contigH-paniculata_contig6531:5932..6740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size201
Cds size150
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6531.14385.1prot_H-paniculata_contig6531.14385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6531 5982..6740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.1176112-UTR-H-paniculata_contig6531:5931..59811622930766.1176112-UTR-H-paniculata_contig6531:5931..5981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6531 5932..5981 -
1691481442.6867504-UTR-H-paniculata_contig6531:5931..59811691481442.6867504-UTR-H-paniculata_contig6531:5931..5981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6531 5932..5981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.138534-CDS-H-paniculata_contig6531:5981..60171622930766.138534-CDS-H-paniculata_contig6531:5981..6017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6531 5982..6017 -
1691481442.7055287-CDS-H-paniculata_contig6531:5981..60171691481442.7055287-CDS-H-paniculata_contig6531:5981..6017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6531 5982..6017 -
1622930766.1605868-CDS-H-paniculata_contig6531:6626..67401622930766.1605868-CDS-H-paniculata_contig6531:6626..6740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6531 6627..6740 -
1691481442.7169502-CDS-H-paniculata_contig6531:6626..67401691481442.7169502-CDS-H-paniculata_contig6531:6626..6740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6531 6627..6740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6531.14385.1

>prot_H-paniculata_contig6531.14385.1 ID=prot_H-paniculata_contig6531.14385.1|Name=mRNA_H-paniculata_contig6531.14385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
FYLRCLLPTDDERGRWTLCRCQGKDEDLDGLKLKLNFTKVALTVRHEWW*
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mRNA from alignment at H-paniculata_contig6531:5932..6740-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6531.14385.1 ID=mRNA_H-paniculata_contig6531.14385.1|Name=mRNA_H-paniculata_contig6531.14385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=809bp|location=Sequence derived from alignment at H-paniculata_contig6531:5932..6740- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTATTTGAGATGTCTATTGCCTACGGATGACGAGAGGGGAAGATGGAC
CTTGTGCCGATGCCAGGGGAAGGATGAAGACTTGGATGGGCTGAAATTGA
AGTTGAATTTTACGGTGAGTGCAAGTACGCCTGTTTTTCTCAAGTGTTTC
ACGGGATTTGCGTTGGTATCATGGTGCTTTGCGATTCCCTTCGTTTTGTC
GGCGTGCATGGAGATGGAGGAAGCGTCTCGCGTTTTTGTACCTGGAGCCC
GTTCTAAAAGACAGCCTTTTTGTTGTTGTTGTTTTTTCGAATTCCTCCCA
CTGTATTTTTCTTGATAGATTTGGAAACGAAGTACAGTTTTTGGCCGAAC
GATATTTAGTTCCTGATTTTCCAAAATTTTTGAAGTGGACCCCAGCCCAT
CGTATGCCGAAGGAGAGTTGGAATTGGGACTGGAAAGGAAATCCCATCGC
TTAGAATCAACCTAAACACACGATAGAAGCAATACAGAGAAGGTATTCCT
GTTTTATTACTGTAGTCCATTGGGGAACCCTAGCCCCAAGTGGTTTTTAC
CTTGTTCCGGGGCTGTGTTCGTCCTTGCGCGAGCAAACGGACGCGGAGGT
CAATAACTGAACCTCGTGGCCTCTTGTGTTAACAGGCGTGTTTATTTTTT
TCCCCGCCGGATTTATTCAGCTAACACTCTTGCGCTTTGTGCATGCGCTC
TCTGTCCTGTTCCCCTTGTACAGAAAGTAGCGCTCACGGTAAGACACGAG
TGGTGGTAATGGCGCAGACACAGACAAGGTAGATGGAGCGGGCGAAGAGA
AGAGAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6531:5932..6740-

>mRNA_H-paniculata_contig6531.14385.1 ID=mRNA_H-paniculata_contig6531.14385.1|Name=mRNA_H-paniculata_contig6531.14385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig6531:5932..6740- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTATTTGAGATGTCTATTGCCTACGGATGACGAGAGGGGAAGATGGAC
CTTGTGCCGATGCCAGGGGAAGGATGAAGACTTGGATGGGCTGAAATTGA
AGTTGAATTTTACGTTTTATTTGAGATGTCTATTGCCTACGGATGACGAG
AGGGGAAGATGGACCTTGTGCCGATGCCAGGGGAAGGATGAAGACTTGGA
TGGGCTGAAATTGAAGTTGAATTTTACGAAAGTAGCGCTCACGGTAAGAC
ACGAGTGGTGGTAAAAAGTAGCGCTCACGGTAAGACACGAGTGGTGGTAA
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