mRNA_H-paniculata_contig653.14383.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig653.14383.1
Unique Name	mRNA_H-paniculata_contig653.14383.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.140e-75
Identity = 178/316 (56.33%), Postives = 213/316 (67.41%), Query Frame = 1

Query:    1 SDLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETLLIDFTEGDRLGVATVAREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIKETE 948
            +D+L +LG V VTL++L+ESKVGATVSKLKKHADE VS SAKALVKKWK+VAEASGVQ       XXXXXXXX                      XXXXXXXXXXXXXXXXX          + +     +   +S+S                 PL   +    + +  T ++VD++LS D  AP RL+MRRK+ +TLL+  +E +R+  A VA+ VE AMN NNPY+SKK  YL KARQLVFNLKKNDQLRQDVREG+V P+RLV MTSTELMAK+KREAMDKAV +RTEAR LDW++KN DKINKQCGIKET+
Sbjct:   27 ADVLGSLGKVEVTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXXXSPPGSAGKGSGASKQEVPSPSGXXXXXXXXXXXXXXXXXXXXXXATAATSPLKGAVGKTATSSTS--------------EAVPLSRQTSGSSTSELCTTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIPTARVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETD 328

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.500e-27
Identity = 128/319 (40.13%), Postives = 178/319 (55.80%), Query Frame = 1

Query:    4 DLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDAL----LSQDGVAPSRLRMRRKLMETLLI----DFTEGDRLGVATVAREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGI 936
            D+L  L  V +T+ ++ ESK+G+ VSKL+KHAD  V+  AKALVK WK++A+A+GV+ +    EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       +     V    ++ ++ S+ +      F + +  R         + P+K  + +  V A     L +DG+ P+RL+MR+K +E  ++    +    D    A  A  VE  +N   P+V          RQL+FNLKKN  LR DV  G VP   L+ M+ TE+++  KR+AM+    D  +ARR+DW EKN D+INKQCGI
Sbjct:   30 DILSQLEKVDMTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGSNRAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEQK----------------LRVQAPVEKALKDLRRGSTDS------FVSDASPRVGG------AKPAKAQTPKATVSAAHMASLQEDGLLPNRLKMRQKFLEIFVLPEDDESAAPDGQLAAEAACGVERELNAKFPFV----------RQLLFNLKKNAALRSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGI 310

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A1V9Z9K2_9STRA (Transcription elongation factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9K2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.680e-19
Identity = 100/321 (31.15%), Postives = 130/321 (40.50%), Query Frame = 1

Query:    4 DLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVA-----EASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETL-LIDFTEGDRLGVATVAREVENA----MNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGI 936
            D L  L  + +TLS+LKESK+G TV KL+KH D  V+  AKALVKKWK +A      AS V A PSK                                                    NL+   +  + +                   +  ++ +K        S+    +S +V         G++  R  +RRKL E L L D           VA E   A    M+        K DY  K RQL FNLKKN+ LR +V    V  + LV M+  EL  +E+R   DK   D  ++ RLDW   NADKINKQCGI
Sbjct:   26 DALGHLESIPMTLSILKESKIGQTVGKLRKHEDPKVAEPAKALVKKWKSIALSPRTSASDVTAEPSKPAK-------------------------------------------------NLVAAAVQKIEA-------------------KVKTEPKK--------SVAYTGSSEKVMAATSFIPPGLSTVRATVRRKLKEVLELADEDLRSEAEYVAVAIETSMAKLYGMDKGLETAQAKKDYGSKYRQLSFNLKKNEILRDEVLTQTVSGDVLVNMSPDELATQERRLEKDKFRDDAFQSSRLDWDVANADKINKQCGI 270

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A7S2ETU1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ETU1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.050e-19
Identity = 95/317 (29.97%), Postives = 135/317 (42.59%), Query Frame = 1

Query:    4 DLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQ--DGVAPSRLRMRRKLMETLLIDFTE-GDRLGVATVAREVENAMNGNNPYVSKKDD--YLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIK 939
            D+L+ L +V +TL +L E+ VG  VSKLK H D  V S AKALVKKWKK+A+  GV                                                                             TS+ST +V+        ++   L+  S +  +  A+T   + A + Q  D + P R  +  KL + L        D+   A  A  VE A+N     +S+ D   Y  KAR L FNLKKN QLR++V    + P++LV M   +L + +K +A  +A +  +E+R LDW +KN  KIN  CGIK
Sbjct:   35 DILQRLEEVPMTLKLLSETLVGTVVSKLKSHKDAAVQSKAKALVKKWKKLAKEGGVG----------------------------------------------------------------------------TSTSTTNVA------KPKKAGDLVRRSSTSSTASATTAPSIPANIQQEWDKLGPLRKNIVTKLHDILYASSKVLSDKSDTALRAAAVERAINS----ISRGDKGAYTAKARSLFFNLKKNQQLRENVLLEHISPKQLVTMPPDQLASADKVKARTEAANQLSESRLLDWEQKNEAKINDMCGIK 265

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A7R9WI09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WI09_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.070e-18
Identity = 101/312 (32.37%), Postives = 139/312 (44.55%), Query Frame = 1

Query:    4 DLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETLLIDFTEGDRLGVATVAREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIK 939
            D+L+ L D  + +++L ++ VGA VSK+K H D  V+++AKALVKKWKK+A+  GV +     +  XXXXXXXXXXX                                              V    R  + ++S            ++    P L  ++S   +D   + + +      G+ PS +        +L +             A EVENA+          ++Y  KAR LVFNLKKN  +R  V  G + PE LV M S EL   EK  A  K V D  ++RRLDW   N DKINKQCGIK
Sbjct:    7 DILRRLDDADINIAVLSQTLVGAVVSKMKSHRDASVAAAAKALVKKWKKLAKEGGVGSGSGGPKKLXXXXXXXXXXX--------------------------------------------NGVGVARRASEPSTSGAGD-------EAEWSHLPPLRRNISNKLRDIFLQSKAELTRGDGGLDPSAVT-------SLCVSR-----------ASEVENAVQAQ--LKGDVNNYKDKARSLVFNLKKNASVRDQVLLGRIGPEDLVKMRSEELATSEKAAARAKLVSDLQDSRRLDWETANEDKINKQCGIK 247

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: W4G1Y0_9STRA (Transcription elongation factor S-II n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1Y0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.460e-17
Identity = 94/329 (28.57%), Postives = 150/329 (45.59%), Query Frame = 1

Query:    1 SDLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEA---SGVQATPS-KAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETLLIDFT-----EGDRLGVA---TVARE--VENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIKET 945
            +D ++ L  V +TL++LK++K+G T++KL+KH  E VSS AK L+KKWK +A     S ++  P  K+E                                                      + + ++    +   +   +   +++        R+AP+  FS    S+  ST  +        G+   R  +RRKL E L +  T     E + + V     +ARE  +++A N N      K  Y  K RQ+ FNLKKN+ LRQ++    +  ++L+ M+  E+  +E+R+ MD+   D  +  RLDW E NADKINK CGIK+T
Sbjct:   26 ADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAEVVSSKAKHLLKKWKTLASRPSDSDIKVDPDVKSEMGTPKVSPTASDLSAKDESKWS--------------------------------VKVETIKDEPKRPVKDDPAATPITI--------RRAPVHAFS----SQRNSTPFE----FIPKGLQDVRATVRRKLKEVLSVAETPELVAEAEFVAVGIEVAMAREFKMDSARNTNEG----KKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDT 302

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A067BNN7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BNN7_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 1.110e-15
Identity = 92/318 (28.93%), Postives = 124/318 (38.99%), Query Frame = 1

Query:    4 DLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEASGVQATPSKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETLLIDFTEGDRLGVATVAREVENAM-------NGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGI 936
            D L  L  +A+TLS+LKESK+G T+ KL+KH D  V+  AK LVKKWK                                                                      L L+   ST    +     T  ++ + +    +               + + E +  A      ++  R  +R+KL E L +   E  R      A  +E AM        G  P   KK+ Y  K RQL FNLKKN+ LR +V    V  ++LV+MT  EL  +E R   DK   D  ++ RLDW   NADKINKQCGI
Sbjct:   29 DGLDHLDSIAMTLSLLKESKIGQTIGKLRKHDDAKVAEKAKHLVKKWK---------------------------------------------------------------------ALALSPRTSTTDVTKDAPKKTTEMAAVAKKLEGK--------------VEKTAEKKPSANFLPSNLSNVRTTVRKKLKEVLEL-ADEDLRSEAEFAAMSIETAMAKLYKMDKGLEPADMKKE-YTSKFRQLSFNLKKNEMLRDEVLTLTVTADQLVLMTPDELATQELRLEKDKFRDDAFQSSRLDWDVANADKINKQCGI 261

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A6A5AKX6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKX6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.380e-15
Identity = 91/323 (28.17%), Postives = 141/323 (43.65%), Query Frame = 1

Query:    1 SDLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKKVAEA---SGVQATPS-KAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATSDRRKAPLLFFSLSIPSKDASTEVQVDAL-LSQDGVAPSRLRMRRKLMETLLIDFTEGDRLGV-ATVARE--VENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIKET 945
            +D ++ L  V +TL++LK++K+G T++KL+KH  E VSS AK L+KKWK +A     S ++  P  K+E                                                      +    V  T  +      S    S      +  R +P +F              Q+DA+ +  +G+A  R R R    +           +G+   +ARE  +++A N N      K  Y  K RQ+ FNLKKN+ LRQ++    +  ++L+ M+  E+  +E+R+ MD+   D  +  RLDW E NADKINK CGIK+T
Sbjct:   26 ADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHEAEVVSSKAKHLLKKWKTLASRPSDSDIKVDPDVKSE------------------------------------------------------MGTPKVSPTASDLSAKDESNEGRSGCHPHHNPARTSPRVF-----------EPAQLDAVRVHPEGIA-GRARHRAPKAQGGXXXXXXXVAVGIEVAMAREFKMDSARNTNEG----KKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDT 278

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A7S0XKL3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XKL3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.080e-15
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 1

Query:  580 KLMETLLIDFTEGDRLGVATVAREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIK 939
            K   TL+      D L   TV R  +  M     ++S+K +YLGKAR L FNLKKN  L   +  G VP + LV MTS +L++ EKR+  ++      +A  LDW  +N DKIN+ CGIK
Sbjct:  147 KAKPTLIKQGINADALDHLTVERATDIEMAIQTKFMSQKQEYLGKARSLCFNLKKNTGLAAQIILGQVPSKELVGMTSEQLISDEKRKEFEERKKSLMDANMLDWEAQNEDKINEMCGIK 266

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BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Match: A0A7S1ZLW0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLW0_TRICV)

HSP 1 Score: 75.1 bits (183), Expect = 4.020e-12
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1

Query:  643 AREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKNDQLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHEKNADKINKQCGIK 939
            A E+E A+   +   S  D Y  KAR LVFNLKKN  LR+ +  GVV  +RL  M   EL++ +K  A  K V D  ++RRLDW + N  +IN+QCGIK
Sbjct:   95 AAEMEAAVQSRSRGDS--DSYKEKARSLVFNLKKNGPLREQILLGVVSGDRLCSMKPDELLSADKARARAKMVGDLQDSRRLDWEQANEARINEQCGIK 191

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig653.14383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
D7FZL7_ECTSI	2.140e-75	56.33	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CH25_9STRA	1.500e-27	40.13	Transcription factor S-II-domain-containing protei...	[more]
A0A1V9Z9K2_9STRA	1.680e-19	31.15	Transcription elongation factor n=1 Tax=Achlya hyp...	[more]
A0A7S2ETU1_9STRA	3.050e-19	29.97	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7R9WI09_9STRA	8.070e-18	32.37	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
W4G1Y0_9STRA	7.460e-17	28.57	Transcription elongation factor S-II n=3 Tax=Aphan...	[more]
A0A067BNN7_SAPPC	1.110e-15	28.93	Uncharacterized protein n=3 Tax=Saprolegnia TaxID=...	[more]
A0A6A5AKX6_9STRA	3.380e-15	28.17	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A7S0XKL3_9STRA	8.080e-15	41.67	Hypothetical protein n=1 Tax=Pseudo-nitzschia deli...	[more]
A0A7S1ZLW0_TRICV	4.020e-12	46.46	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig653	contig	H-paniculata_contig653:1532..9094 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	251.1
Seed ortholog evalue	6.7e-64
Seed eggNOG ortholog	2880.D7FZL7
KEGG ko	ko:K03145,ko:K03926
Hectar predicted targeting category	other localisation
GOs	GO:0000428,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.	Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGs	COG1594@1,KOG1105@2759
Ec32 ortholog description	Transcription elongation factor TFIIS/CRSP70
Ec32 ortholog	Ec-25_003580.1
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03021
Exons	8
Model size	948
Cds size	948
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig653.14383.1	prot_H-paniculata_contig653.14383.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig653 1532..9094 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig653:1532..9094-
coding sequence from alignment at H-paniculata_contig653:1532..9094-

protein sequence of mRNA_H-paniculata_contig653.14383.1

>prot_H-paniculata_contig653.14383.1 ID=prot_H-paniculata_contig653.14383.1|Name=mRNA_H-paniculata_contig653.14383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
SDLLKTLGDVAVTLSMLKESKVGATVSKLKKHADEGVSSSAKALVKKWKK
VAEASGVQATPSKAEKTEKPSQGNGGSSGGSSVQSPSSVANSGGKGSSAS
LSRKSSASSSYNQIFNLLVLTLTSVHSTHRECQQTSSSTRHVSVIFQATS
DRRKAPLLFFSLSIPSKDASTEVQVDALLSQDGVAPSRLRMRRKLMETLL
IDFTEGDRLGVATVAREVENAMNGNNPYVSKKDDYLGKARQLVFNLKKND
QLRQDVREGVVPPERLVVMTSTELMAKEKREAMDKAVHDRTEARRLDWHE
KNADKINKQCGIKETE

mRNA from alignment at H-paniculata_contig653:1532..9094-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig653.14383.1 ID=mRNA_H-paniculata_contig653.14383.1|Name=mRNA_H-paniculata_contig653.14383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7563bp|location=Sequence derived from alignment at H-paniculata_contig653:1532..9094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATCTGCTCAAGACCTTGGGAGACGTGGCCGTTACGCTGTCCATGCT
TAAAGAATCCAAGGTGCGTTTTTAACACTATTTGATAGCATACCGCTCAT
TTTGGATGTTGACTGCGGGAGCAATCATGTAGCTAAATCAAGTATATAAA
GATGGCAATCGTTGGTATCGAGCACAACTGGAAAATGACCAAGTGGTGCG
CTACACCCTCTTACACCGCGTAGGGGGGCACGTTTCATGGGCGCTTTTTT
CCTAGGGATGTGAAAGGGATATGATTGCCCCCGCTGAAAAGATCTCGAAG
GTAGGGTGAGAAAACGTCTCAATCGGTGGCTCACGGCGGTAAGGGGTTGA
TTCCCACTGTAGTTGGGATCTCAGAAACTGCAATGAAATTCAGTAGTGGT
GACGTATGTGGTGTACCGCAAAAAAGAGGTGCGCTACCGAGATGAACACT
GTCATGTACATATCTTCACGTTCGCGAAAACGCCGTCCTGCGGTGGGTGT
AGACGAGGGAGCGTCACATTTGAATCCAGAGTACTATCATGAGATTGGCT
GTATACAGGAATTTCTCTGGTACCAATCTGTACTATTGGTGGAGTAGGCG
GGTAGGCGGGTCCCCCATGTGGGAAAATGGGGGTATGCACCTCCTGCGGA
AAGACGGGACCCAACCCCCTCGATGGGCCGCCTGCGTCGCACCCTCGATT
CAGAGACGTGTTCGCTCTGTTACGATGGCATAGTGTGGACGTATAAGAGC
CAAGGGACGTTCGTTGTGACATGTTCCTGTTGTAGCTAGTGATCGTTCGG
CACGAATCAAAGGCATCAAGCTTGCGAAGTACAATATACAGCCAGTGCCC
CCCCGAGATGCCTCTTGGGCGGCGCAAGTTTTAGTCTAGCCACTTTATTT
TGCCAACGAGTACAGAGCCCCTTTTCATCAATTCATAACGTCGTGTGCTC
TCATTTTTTTTTTATAACCAAACGTCAATTTGTGGCCCTTCGCGGTCAGG
TTGGGGCAACGGTTTCAAAGTTGAAGAAACACGCGGATGAGGGGGTTTCC
AGCAGTGCGAAGGCGTTAGTCAAGAAGTGGAAGAAAGTGGCTGAGGCGTC
AGGGGTGCAGGCCACCCCTAGCAAAGCAGAAAAAACGGAGAAACCTTCCC
AAGGTAACGGCGTGGGTGGATGCCCAATAGTTTTACAGAGTTCTTGTGAG
AACGCCCGGAGATGCTGATTTTGTTGTGTCATTTTGGGCGAAGTTCGTTA
GATAGTGTGCCTGGCCAATGTCGGGTGTGTTCCCTCGTGACGAGACCGAC
GTTGGCGTTTACTGTAGAGCGTGTCTATGTACCTGGCTTTATATGGGTTT
GATTTTGAACTACTGAAGAGAGAAGTGCATTACTCTTAAATGATGGTCGA
GTATGAAATTTGGTGTGTTTAATCGTATACCTGTAGAAAAGATTTTCGCT
TTAGAAAATAAGTTAACCCCGCTCTTATCCAGCATATGGACTTGTCTGTA
CAAACGAGCACTCTGGTACATTAATTTCTACGTCGGTCTAGGTTCATTGT
CCACGCGCTCAAAGCCACTCGTGGTGTCGTTCTCCTGAATGACAGTATGC
CTTGGATTTCTCGTGCCCGACAAACAAAGAACAACCATGTTTCCACCAGA
ACCAATTTTCGTTCCCTCTGTATATACATGATTAGTATGGGGCTTCGTGT
ATACTGTACGCTAACGGGGTTTTTTTCGTTTGGGATTTTTACAGAAATGG
ACATACCGGTGTCGCCTACGGAGGAGGGTAGCTCCGGTGGCTCATCGGTG
CAATCACCCTCTAGCGTTGCGAACAGCGGCGGCAAGGGCTCATCTGCTTC
GTTGTCGAGAAAATCATCAGCGTCGTCGGTAAGATTCAAGATCGAGATTC
AATATCAACATTTTTTTTTCCGCGGTGTCCCCTTTCCACTCGTCTTTTGC
GTCTTGTATTGTACATGATCAACTGACGAGCGAGTGGTCCGTTGAGGGCC
TGTACCGATGGAACAATGCTTAGGACTTTACTGCAGCGTTCTGTACAATC
TATTCCTTGCGGGTGAATATGTAGATCCCGAATGGATCAGAATTTTTCAA
GAGTTATAATCAAATCTTCAATCTATTAGTGTTGACTTTAACTAGTGTAC
ATTCGACACACAGAGAGTGCCAACAAACATCTAGTTCAACCAGACATGTT
AGTGTCATTTTCCAGGCCACCAGTGATCGCCGAAAGGCGTAGCGTTACTG
GCGGTAATCGCACGTGGTTGTTGTGATAAAACAAACGCTTCGGTACGACT
GCCTACTGTAGATTTCGTCGAACTTGAAGTGTATGTAAATAGGGTCGTGG
ATCGGTCTGATGTATCGTCGATATCGAGACATGGTACCTATCAGTTTCTT
TTAGCCGATCGATATATTGGCGTGTGCCGTTACCCACTATAAACGCGATT
TTTCGGTCGTTGTCCATTAGCGTTTCAATGGTACATGTGGTGACCGTGGG
TCTTGTTCGCTTTTTCCTGCGGGTACGTAATTCGGGTTGCATTTAGTGCT
TTTGTGTGTCTTGCTACGTTCACCTGCTGCTGCACACAGCAGTCGATATC
TTTACTGATATCTGGCTCATTTTGATACATGGGCAATATTATCGGTATCT
CGTGGTCTGCGATCTGCTGATATATCTTATATCCATAATTCCTTTCAATA
CACAATCCCAACTGTAAGTTGGTGATTATTGACATCTTAAAGCGCGCCAA
GCGAGGGCTCGTTTTACACAACAAATTAATTCATTTGAAGTGTGTAGATT
TGCGTCAATGCACGGATTCTATCTCCTCAAGAGGAGCTGTTAAAAGGAGG
GCTGAAAGATTAAGTTTCCATCGTGATTTTGCGTCTTGAAAGCTCCAGCC
CTCTTCTTTTTTTTTCCCTCTCTATCCCGTCGAAGGATGCATCAACCGAA
GTCCAAGTGGATGCTTTGCTCTCGCAAGATGGGGTCGCCCCTTCGCGCCT
GAGAATGCGGCGAAAACTAATGGAGACGCTTCTTATAGACTTCACCGAAG
GAGATCGGTTAGGTGAGCTGTCGATTATTCTTACCTTTGGCACATAACAC
GCTTTTTGAGTGTAGAGCATTATAACCTTCTGAGAATATACAGTGATGCT
CTTCTCAGCATAGAGCATGACATTATTCTGAGAGTAGAGCATGACATTTC
CCTGAGAGCGTCGACCATACCCAAACATCTCAACCGCATTATCTTCACGT
TTGGCATTTTTTTCCGTTTTTGGTCCAAGACGTACGTAAATAAATATTCG
GTTTTTAACCCCAAAGGAAAAGCAAGTAACCCCTATAATTTACGAGATTG
TCATCACACCTCGTAACCAATTGGTGTGGGTATTTTAAAAATCGATTGTG
GGGTATAACAGTATAAGGGAATAAAGCGATTTCCATGGTTTCAAGGAAGC
GCCTCAGATCGTGAGTACTCATCAATAGGTTTGAGCATCGCTTGCGGTAT
AGTGTACACACATTTTCCTCTATCGGCTTTGGGTTGTGCAATTTTAATCT
TTCGGGATAGAATCGCCGTGGATAGGCGGAGCGATTCGTGATGCTGGTGT
AAGGTGTTAGGGCAAGTGATTGGGATCAATCTATTGGGAGTATCTCACCC
CCTAATCAGCTGTGAAGTGTTTTTGTATGTGTTGGCCGTTACGGAAAAGG
CCAGTGTTTGCCCGTTTTTCCTCCACACTAAATCCGAGATATTATGCTTC
GAAACGGCAAGAAACAAGCCCCCCTTTGCACCTAAGATACACTAACCAGT
TTTTTAGAGGTGAAGGGGGGATTCTATCGTGTTCGTATTGGTCATTATTT
GGACTTATGGTTGGTAAATCTCTACCTTTTGGTAGTTACAAGGTCCGGTT
TCGGAAGGGCCCGTCGTTTTAACATGGTCATATCCAATGTCAAGAGCTGT
CGTGGTGTTGACTGCATTTAATTACCTCTGCTTCGCTTTTCCCAACTTGG
TTGTGACGAGGTTATTGCATCTGAGTGCTGTAGGATTGTGTATCGGCACG
TATACTATTGTGTGTATGTTTTGCAGTTAGTAATGTTCGGGCAGAAGTCG
CTTGTTTCATGCTGGGCTGCCGCGCGACGCAGCCACTATTGTTGTAAATA
CTGACAAATGGCACCATATATAAGGGAGCTCGGACAATGCAAGGCCGTGC
CGATCTAATGGCGTCTGTCGGTGAAATGCTGTTTATTAAATAAAGGTTGG
AAAATGCCGCACAAAGGTAACGTTTGGCTCGTGCAGCGTTCGGAAGTTAA
CTTGTTTGCAGCCCGTGGTTCAAATTTGTCACACGTCAATATATGTCATT
ATACGTGGCCTGTGTCACTTCCGTGCTGTTACATGCTGCAGGCGTTGCTA
CCGTCGCTCGAGAGGTCGAAAATGCGATGAATGGCAACAACCCTTATGTG
TCGAAGAAAGACGACTACCTGGGAAAAGCTAGGCAATTGGTCTTCAACCT
AAAAAAAAATGATCAGCTCAGGTGAGCCTTGGCGCCGTGATATGAGCTGT
CATTGGGTGCTGCTGCTGCTGCTGCTGCTGCAGCTGCTGGGTGGGCGGAG
ATGTGGGATTCTCTGTATTTGGTCATGTTCTAGATTTGTGACTCTCACCG
CATTTTATGTGGGATTCTCCGTGTTTGGTCATTTTTCAGACTCGCGTCTC
TAACCGCATTATGTGGGATTCTTTGTATTTGGTCATGTTCCAGACTCGCG
ACCCTCAAAGCATTTTCGGGATTCCCACTGCGGCATGTAAAATTTGTTGA
CTTGTTGTAGTTGTCTATGTGCATTCAATACCGCTATCAGGTGTACAGGG
TGGACATGGTTCACATTACGAAATGATTCGTTGAGGTATGCTGTATATAT
TGCGCTACTAGCCAGCTGGGCTGTACACGAACGAGCGATAAATTTGCCTG
GTTCTCGAACTGCTCACGTTGCTCCTAACGCACTCGCAGAGCTGGGTCGA
CTAGTAGATGTTGTTGGGGTACCTCCAGCACGTGAATCACTGCTTCACAC
TGGTGTTAATTCGGGGGGTAGCCCGGCGCTTTTTGTCATGCTCCACGACG
GCAGACCCAGTGTGTCAATGGGCAGGTTGTGGATTCAATCCGTTGTACTC
AATAATGTTTCCCTCTAATGTTCGCGGGAAAAAATCTTGTTAAGCGACCA
AAAATAATGCCTGCGATACTTATACTGCCGCCAATCCCAACGCTGAGGAG
CGACTGAGACTGCTACCTCCACCGCGCGATAACATAATTCAAGAACCGAG
GAATTACTCTCCTAGCTATGGACTGGAGTTTCCGAATTTGACCCTGCATC
GGCTCATGGTTTTGCCGAGAGGCGCCAGTAGGACGTCCTTGGCGACTGAA
GGATTGGTGTTTATCAAAGGCACCTCGTCACCGAAGCTCTTGTCTTTTGT
CATACGGAGACGAACTCAACGCAACTGATTGTCATACTGATTGTAATTCT
TGACACGTATACATACAATCTTCAAGTTTGAAAACCCACGAGCACAAGCG
GAAGCATGTTGATCGTAAATGCAACAGATTTGGGGGAAAAGCTTTTTTTT
TTGTGTGTGTATGTGTGTGTGTGTGTATTATTTCGGTCAGGGTTGGTGTA
AGGTTTAGTCCATTTTCTCCAATCTGCATGTATGAACCGATTCGGGCCAT
TTTCTCGATTATCCCAAACACATGCAATGATTGAAAGCCAAGCTGTGAAA
GGAAGGTACTTTCTCGCTTTTTTATTGGACATCTTCCCGAGAAAGAGGGG
GATGGATTAATGTATCCCTTTCAAGACTGTTCGGCCAAGAAGCTATTTAC
ATATTTTGCTAGTGGGGGGTCTGTGGCTCAGACTTCCTCGCCAACTGGAG
GTGCACCCCCACTATCGTACCTTAGACCCCCCCCTGTGGAACATGACCAT
GAACACCACGTTAACGTGTCAGTTAATACCAGTATATCCCCCAACCCAAC
AACAACAGGCAAGACGTACGCGAGGGAGTAGTGCCCCCGGAAAGACTCGT
GGTGATGACATCCACAGAGCTCATGGCCAAAGAAAAGAGAGAAGCAATGG
ATAAAGCAGTCCACGACAGGACTGAAGCACGAAGGTGAGGGAGTTATTCA
TTTGATCTGGCCTGAGCTGACCTGACGGTGCATCCGCCACAACCTTGGCT
GTGATGACAGTGATAGCGCACTGTTCATTATATTCATCAGTGTTACTGGT
ACGGGCGGTATATTGATTTGCTGAGACGGTTGCCAGTACTGCCAGTACTT
GGAATATCACGTACGACTTGGTGAAACGCCTCGTAATCCAGTAGAAACTC
TGAATTGATCATTATCCGTTGAGCCTGGCGCGCGCGAGGGCAACATCTGC
TGCTCTGCTGGGGATGCAGAGGGAATAGGTGAAAGTACGGAGAACACATG
AACAAGGAATAGTGTGGTGGCTACCTGAGGAGAACAGTAATAATCACCCA
ACGTCTGTCGAGGACAGGTACCCTCATCTTCACAATAGCGCTATTATATA
TATATATCATATCTGTGTGTTTGTGTTGTGTTTGTGTTTGTCCGTGTCGA
TTGAAAGCAATTATCGCTGTCATACCCTGATGGTTTGGCACCCGATTAAA
AATATATACTGAGCCAAAATCCGTATCTTTCCTTCCTCTGGCGGCGCCGC
CAGCCTGGTCCCCTCACCAGCCAGGGGGGAGGTTGGCTCGCCCTAAAATG
CTCACCTGTTCCCAGTATACCAGTATACTGGCCGAAGCTACCAGTATCTA
GCCCTGGCTATTGCTGTTTGCCTCCGTTCATCAGTAGATTCCTGTCGACA
AACCAATCTCCAGGAGAATAGCTCAAGCGTATTGTACATGATGGACCTCG
TAGGGCTGGTGTCGAGCAAGTTAACTATGTTGGGTGTACATGCGCGTTTT
GTTGTTGTTGATGTGTTCAGTGTCTTGTTTTATGTACTCTTGTATCAGTG
TCGTTTGTTGACCTGTTGTTACGATAGTAGTTGGAATCGAAGGCCATGTT
GGGGAAGGTATTTATTGACGAGATGTCAGCATGGGCAAGCTTATCGTTAG
CTTTCCCTACAGCTGGTTCAGTACAGTGGAACTTGTTGCTGAGGACCAAA
GCCATACCCTAAGTACTCGCATGCTTTCCCGCTCTTGTCCCAGGCCCCGT
GTTTTTAATAGTGTTTTCTTACTAAAGCTCGACCGTGTTTGAGGGGGAAA
GGCGGTGTGATACTCGGCAAACACATGGAGACCTTTTCTTATTGAACGTT
GAGGCAGGAGATTGATTGGTGCCACAAAAATACTTACAGCTGGAGCTACT
TGATGGTGTGGTCACAATGGATTTCGTCATTTAACGACCGTGTCATCAGA
TACATCAAATTCTAGGTACTATTCGTGTCTTGAAAAAAAAAATATATATA
TATATATATATAAGTAATATTTTCCGTTTCCGTCCGCACGGTATGATAGG
TTGGACTGGCATGAGAAGAACGCGGACAAGATTAATAAGCAGTGCGGCAT
CAAGGAGACTGAG

Coding sequence (CDS) from alignment at H-paniculata_contig653:1532..9094-

>mRNA_H-paniculata_contig653.14383.1 ID=mRNA_H-paniculata_contig653.14383.1|Name=mRNA_H-paniculata_contig653.14383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig653:1532..9094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATCTGCTCAAGACCTTGGGAGACGTGGCCGTTACGCTGTCCATGCT
TAAAGAATCCAAGAGCGATCTGCTCAAGACCTTGGGAGACGTGGCCGTTA
CGCTGTCCATGCTTAAAGAATCCAAGGTTGGGGCAACGGTTTCAAAGTTG
AAGAAACACGCGGATGAGGGGGTTTCCAGCAGTGCGAAGGCGTTAGTCAA
GAAGTGGAAGAAAGTGGCTGAGGCGTCAGGGGTGCAGGCCACCCCTAGCA
AAGCAGAAAAAACGGAGAAACCTTCCCAAGGTAACGGCGTTGGGGCAACG
GTTTCAAAGTTGAAGAAACACGCGGATGAGGGGGTTTCCAGCAGTGCGAA
GGCGTTAGTCAAGAAGTGGAAGAAAGTGGCTGAGGCGTCAGGGGTGCAGG
CCACCCCTAGCAAAGCAGAAAAAACGGAGAAACCTTCCCAAGGTAACGGC
GGTAGCTCCGGTGGCTCATCGGTGCAATCACCCTCTAGCGTTGCGAACAG
CGGCGGCAAGGGCTCATCTGCTTCGTTGTCGAGAAAATCATCAGCGTCGT
CGGGTAGCTCCGGTGGCTCATCGGTGCAATCACCCTCTAGCGTTGCGAAC
AGCGGCGGCAAGGGCTCATCTGCTTCGTTGTCGAGAAAATCATCAGCGTC
GTCGAGTTATAATCAAATCTTCAATCTATTAGTGTTGACTTTAACTAGTG
TACATTCGACACACAGAGAGTGCCAACAAACATCTAGTTCAACCAGACAT
GTTAGTGTCATTTTCCAGGCCACCAGTGATCGCCGAAAGGCAGTTATAAT
CAAATCTTCAATCTATTAGTGTTGACTTTAACTAGTGTACATTCGACACA
CAGAGAGTGCCAACAAACATCTAGTTCAACCAGACATGTTAGTGTCATTT
TCCAGGCCACCAGTGATCGCCGAAAGGCCCCTCTTCTTTTTTTTTCCCTC
TCTATCCCGTCGAAGGATGCATCAACCGAAGTCCAAGTGGATGCTTTGCT
CTCGCAAGATGGGGTCGCCCCTTCGCGCCTGAGAATGCGGCGAAAACTAA
TGGAGACGCTTCTTATAGACTTCACCGAAGGAGATCGGTTAGCCCTCTTC
TTTTTTTTTCCCTCTCTATCCCGTCGAAGGATGCATCAACCGAAGTCCAA
GTGGATGCTTTGCTCTCGCAAGATGGGGTCGCCCCTTCGCGCCTGAGAAT
GCGGCGAAAACTAATGGAGACGCTTCTTATAGACTTCACCGAAGGAGATC
GGTTAGGCGTTGCTACCGTCGCTCGAGAGGTCGAAAATGCGATGAATGGC
AACAACCCTTATGTGTCGAAGAAAGACGACTACCTGGGAAAAGCTAGGCA
ATTGGTCTTCAACCTAAAAAAAAATGATCAGCTCAGGCGTTGCTACCGTC
GCTCGAGAGGTCGAAAATGCGATGAATGGCAACAACCCTTATGTGTCGAA
GAAAGACGACTACCTGGGAAAAGCTAGGCAATTGGTCTTCAACCTAAAAA
AAAATGATCAGCTCAGGCAAGACGTACGCGAGGGAGTAGTGCCCCCGGAA
AGACTCGTGGTGATGACATCCACAGAGCTCATGGCCAAAGAAAAGAGAGA
AGCAATGGATAAAGCAGTCCACGACAGGACTGAAGCACGAAGGCAAGACG
TACGCGAGGGAGTAGTGCCCCCGGAAAGACTCGTGGTGATGACATCCACA
GAGCTCATGGCCAAAGAAAAGAGAGAAGCAATGGATAAAGCAGTCCACGA
CAGGACTGAAGCACGAAGGTTGGACTGGCATGAGAAGAACGCGGACAAGA
TTAATAAGCAGTGCGGCATCAAGGAGACTGAGGTTGGACTGGCATGAGAA
GAACGCGGACAAGATTAATAAGCAGTGCGGCATCAAGGAGACTGAG