mRNA_H-paniculata_contig6528.14380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6528.14380.1
Unique NamemRNA_H-paniculata_contig6528.14380.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6528.14380.1 vs. uniprot
Match: D8LB40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB40_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.900e-17
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 LCSRKPSTGAFGNMGVMATVRQLDSEQLEADRVEVTARLFMGKKCRPQYQRVPVPLSTRDTEEMKAKQWISLKKAFV 231
            L + KPSTGA GN+GV++TVR LD E      VEVTARLFMGK  R +  R+PVPLSTRD E+ KAKQW +L++AF+
Sbjct:  550 LSATKPSTGAIGNLGVISTVRYLDGEV--PGNVEVTARLFMGKG-RQRSCRLPVPLSTRDDEQEKAKQWAALREAFL 623
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BLAST of mRNA_H-paniculata_contig6528.14380.1 vs. uniprot
Match: A0A6H5KIX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.120e-16
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 LCSRKPSTGAFGNMGVMATVRQLDSEQLEADRVEVTARLFMGKKCRPQYQRVPVPLSTRDTEEMKAKQWISLKKAFV 231
            L + KPSTGA GN+G+++TVR LD E      VEVTARLFMGK  R    R+PVPLS RD EE KAKQW +L+ AF+
Sbjct:  578 LSATKPSTGAIGNLGLISTVRYLDGEV--PGNVEVTARLFMGKGRRRSC-RLPVPLSARDNEEEKAKQWAALRAAFL 651
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BLAST of mRNA_H-paniculata_contig6528.14380.1 vs. uniprot
Match: A0A7S4LLB3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLB3_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 2.260e-5
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   13 KPSTGAFGNMGVMATVRQLDSEQLEADRVEVTARLFMGKKCRPQYQRVP-VPLSTRDTEEMKAKQWISLKKAFV 231
            +P+T  FGN G++  VR++     + D   V+ARLFMG+K       VP VPLS +DT+   A+QW   +  FV
Sbjct:  340 RPTTAIFGNWGILQAVRRMTDADADVD---VSARLFMGRKVS---SGVPDVPLSAKDTDADIAEQWNKFRAEFV 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6528.14380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB40_ECTSI6.900e-1761.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIX0_9PHAE6.120e-1659.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4LLB3_9EUGL2.260e-540.54Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6528contigH-paniculata_contig6528:7646..9814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue9.1e-15
Seed eggNOG ortholog2880.D8LB40
Hectar predicted targeting categoryother localisation
EggNOG OGs2DFF2@1,2S5S6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930765.0523236-CDS-H-paniculata_contig6528:7645..77471622930765.0523236-CDS-H-paniculata_contig6528:7645..7747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6528 7646..7747 +
1691481442.1460998-CDS-H-paniculata_contig6528:7645..77471691481442.1460998-CDS-H-paniculata_contig6528:7645..7747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6528 7646..7747 +
1622930765.0700202-CDS-H-paniculata_contig6528:9685..98141622930765.0700202-CDS-H-paniculata_contig6528:9685..9814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6528 9686..9814 +
1691481442.1561484-CDS-H-paniculata_contig6528:9685..98141691481442.1561484-CDS-H-paniculata_contig6528:9685..9814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6528 9686..9814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6528.14380.1prot_H-paniculata_contig6528.14380.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6528 7646..9814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6528.14380.1

>prot_H-paniculata_contig6528.14380.1 ID=prot_H-paniculata_contig6528.14380.1|Name=mRNA_H-paniculata_contig6528.14380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
LCSRKPSTGAFGNMGVMATVRQLDSEQLEADRVEVTARLFMGKKCRPQYQ
RVPVPLSTRDTEEMKAKQWISLKKAFV
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mRNA from alignment at H-paniculata_contig6528:7646..9814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6528.14380.1 ID=mRNA_H-paniculata_contig6528.14380.1|Name=mRNA_H-paniculata_contig6528.14380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2169bp|location=Sequence derived from alignment at H-paniculata_contig6528:7646..9814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCTCAAGGAAACCCTCTACGGGGGCGTTTGGCAATATGGGAGTCAT
GGCAACAGTACGACAACTCGATAGCGAGCAGCTGGAGGCAGACAGAGTCG
AGGTACATTAGTAATTACTGTACTATATGCAACTTCCAGTGTAGCACCTC
ACACATACATTAGTTTAAAAGTGCTGATTTTGTGGGGGAAACCTTAGCTA
TGTCAACTAGCTAGCAGGCTGAGTCTGCGGGTTACCTCAGTACGGCGTAA
AAATTCCATGTATAGTTGGAGCGAGGGTAAAAAGTGTTTCGTGTTCCATG
TTTGCTGCCTAGCGGGAGCGTGGGAGACACCAAATTTATTGATGTTTGAG
CTTTGAATCAGTGGAGATCAATCTAGAGGCGCGACTAGTAGAAAAGCAAA
GGAGAATCTGAGTACTTCTGTACACTCATTGTATATCGGCAGGATGGCTA
TATGAGGCCGGCAACACACTTGGGATGCACATGGGAAACTATTCTAAGAA
ACGACCATAGTGCACATTGTCTCGAAAACACTTGAATGTAATATACTGGT
CGTGGACTTTCCACGGCAGTCACACTCTCGGAGACTTGCTTCCTACATTA
ATCGAAAGTATTTATCTACTGCAGAGTGAAATACAACCCAACCATCTACC
CAGAAACTCCGTCACATGGTACATTCAGTAGCCTTTTCTGATGTGTGCAT
GCCCCTGTACTTGCTTTACAGATAACTAACCGAAAACATTTTTGAGAACT
AACGGTGATATACATCATAACGATAGCACTCTAGGAATAGATTATATCAG
CAGGCCGAATTTGCGACAGAATCGATAGTTGGGTGTTTGAAAGGGCTGTT
TTAGATACTATGGAGTTTAGATATAAATAATTGTTTCCCTGGATTACGGG
TGCTCTTAATGTGCAACGCTTAGAAAGGGATCATAGACGGCACCATTATA
TGTGCACTGCATTGTTAGCGACGGTATTCCATTGCAGACCCACAGCAATA
ACAGCAAGGCTCTCTGCCGTTGACGGGCATGATTAAGCACTTTCCCGCCA
TCGTTTGATCTTCCTAGAGTCTTTTGAACTCCTCATCAGTCACGCAGGGT
TTGTTTACTGTGCGGTTAGAGGTATACTGTTGTAGACGGATAGGCTAAAG
ATTATACCCCGTTACCGTTACAGAATGCCGCTTTTTTTACGTTCTATAAA
AAAGGATCAAGTAAAAGGAAGGAAAACAGATAAACCATATAGTTATTCAT
GGGGAATCTTTGCATTCGCCTCTTTCGCCAGAATATAGCTTCACAAACCC
TATTTTTTAGCCCTGATCTTACGTGTGTGCGTTATTTTGCTGTTTTTCGT
GAGCAAGAATACGATATTACTTCTACTTTTCGCCAAACACGCACTGCACA
ACAGATTGCATAAAACTCGGCACGACGCAATCTAAGGTGTGATGCTTCGC
GCCTGCGAAGGATCAAATAGAACATGGTTTAATCGAATTGGACGCGAGAT
TGTCAGAAACGTATGGGCAGGCCAACACACACGTGCCGCATCTGCATGCC
CGAGTTATTCTCATTGGATATATGCCCGATCGTCATGCTATTGGGTCGTC
GAAATGCTCTATTCCCGTGATATTCAATGTCATTACGAGGTAATTGGTTT
TCAGGCACGGCATCGTTCTTCGAGTTATAGTATGCCAACATCCTAAAATC
GAAAAGCGTTGGTCGTGAAAGGTTGCAAGGTCCATATTTTGCACTCGGGA
CTAGTCAAGTGCTCAGGTAATTCGAACCCAAGCCCCATGCGATCACGTGT
AAGTTAAAAGTGATCCTCTTGGAATCACACCAAGAGTCGATCTCACCCTA
ACCGACACGATTAACCTCTCTGGACTACCTAGTTATCTTCCGCGATATCT
TCGCGGGGCCGAAGACAAGCACAGAATACAAAACAGTATGACTTTATATC
TGCGATATTTTTCACGAGTCGTCGTTATTTCACTGTTTTTTATCGCCAAC
AAGCAACGAATTTGCCATCGATATGAAACGAAAAGAACAGGTAACGGCAA
GGCTATTCATGGGCAAGAAATGCCGCCCGCAGTATCAGCGAGTTCCCGTA
CCACTGTCGACGAGAGACACGGAAGAGATGAAAGCGAAGCAGTGGATTTC
CCTGAAGAAGGCGTTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6528:7646..9814+

>mRNA_H-paniculata_contig6528.14380.1 ID=mRNA_H-paniculata_contig6528.14380.1|Name=mRNA_H-paniculata_contig6528.14380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig6528:7646..9814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCTCAAGGAAACCCTCTACGGGGGCGTTTGGCAATATGGGAGTCAT
GGCAACAGTACGACAACTCGATAGCGAGCAGCTGGAGGCAGACAGAGTCG
AGCTGTGCTCAAGGAAACCCTCTACGGGGGCGTTTGGCAATATGGGAGTC
ATGGCAACAGTACGACAACTCGATAGCGAGCAGCTGGAGGCAGACAGAGT
CGAGGTAACGGCAAGGCTATTCATGGGCAAGAAATGCCGCCCGCAGTATC
AGCGAGTTCCCGTACCACTGTCGACGAGAGACACGGAAGAGATGAAAGCG
AAGCAGTGGATTTCCCTGAAGAAGGCGTTCGTGGTAACGGCAAGGCTATT
CATGGGCAAGAAATGCCGCCCGCAGTATCAGCGAGTTCCCGTACCACTGT
CGACGAGAGACACGGAAGAGATGAAAGCGAAGCAGTGGATTTCCCTGAAG
AAGGCGTTCGTG
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