mRNA_H-paniculata_contig65244.14377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65244.14377.1
Unique NamemRNA_H-paniculata_contig65244.14377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65244.14377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65244contigH-paniculata_contig65244:40..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930764.8084047-CDS-H-paniculata_contig65244:39..3781622930764.8084047-CDS-H-paniculata_contig65244:39..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65244 40..378 +
1691481442.0137072-CDS-H-paniculata_contig65244:39..3781691481442.0137072-CDS-H-paniculata_contig65244:39..378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65244 40..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65244.14377.1prot_H-paniculata_contig65244.14377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65244 40..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65244.14377.1

>prot_H-paniculata_contig65244.14377.1 ID=prot_H-paniculata_contig65244.14377.1|Name=mRNA_H-paniculata_contig65244.14377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
VVFSCVRQTPRTCSAGPARRLSFVTTGLLEKCCLIAYSVHIATSLFDCVA
DNISVCFSGLLTAFLSVFQFQFAHSGKNCQHSCVLYRCRILIVAATVTLI
TKYSSQIIVTSC*
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mRNA from alignment at H-paniculata_contig65244:40..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65244.14377.1 ID=mRNA_H-paniculata_contig65244.14377.1|Name=mRNA_H-paniculata_contig65244.14377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig65244:40..378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCTTTTCTTGTGTGAGGCAGACCCCACGCACCTGTAGTGCAGGGCC
TGCACGTCGATTGTCTTTTGTGACTACTGGCTTACTTGAAAAGTGCTGCT
TGATTGCTTATTCGGTGCATATTGCTACCAGCTTGTTCGACTGCGTTGCT
GACAACATTTCTGTCTGTTTTTCTGGGTTACTGACAGCGTTTCTGTCTGT
TTTTCAGTTTCAGTTTGCGCACAGTGGTAAGAATTGTCAACACTCATGTG
TTTTGTACCGTTGCCGCATACTGATTGTAGCAGCCACAGTCACGTTGATC
ACAAAATATTCTTCGCAAATTATCGTTACTTCTTGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig65244:40..378+

>mRNA_H-paniculata_contig65244.14377.1 ID=mRNA_H-paniculata_contig65244.14377.1|Name=mRNA_H-paniculata_contig65244.14377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig65244:40..378+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCTTTTCTTGTGTGAGGCAGACCCCACGCACCTGTAGTGCAGGGCC
TGCACGTCGATTGTCTTTTGTGACTACTGGCTTACTTGAAAAGTGCTGCT
TGATTGCTTATTCGGTGCATATTGCTACCAGCTTGTTCGACTGCGTTGCT
GACAACATTTCTGTCTGTTTTTCTGGGTTACTGACAGCGTTTCTGTCTGT
TTTTCAGTTTCAGTTTGCGCACAGTGGTAAGAATTGTCAACACTCATGTG
TTTTGTACCGTTGCCGCATACTGATTGTAGCAGCCACAGTCACGTTGATC
ACAAAATATTCTTCGCAAATTATCGTTACTTCTTGCTGAGTTGTCTTTTC
TTGTGTGAGGCAGACCCCACGCACCTGTAGTGCAGGGCCTGCACGTCGAT
TGTCTTTTGTGACTACTGGCTTACTTGAAAAGTGCTGCTTGATTGCTTAT
TCGGTGCATATTGCTACCAGCTTGTTCGACTGCGTTGCTGACAACATTTC
TGTCTGTTTTTCTGGGTTACTGACAGCGTTTCTGTCTGTTTTTCAGTTTC
AGTTTGCGCACAGTGGTAAGAATTGTCAACACTCATGTGTTTTGTACCGT
TGCCGCATACTGATTGTAGCAGCCACAGTCACGTTGATCACAAAATATTC
TTCGCAAATTATCGTTACTTCTTGCTGA
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