prot_H-paniculata_contig6524.14376.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6524.14376.1
Unique Name	prot_H-paniculata_contig6524.14376.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	241

Homology

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: D7G787_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G787_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 1.360e-117
Identity = 187/240 (77.92%), Postives = 200/240 (83.33%), Query Frame = 0

Query:    1 MPRDRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGSLAT 240
            +P DRLPGKGDIVAIDAEFVSL VEESRLRGDGSKVVTKQGRQSLARVS +DGR S                     A V+MDDYVVQSEPVVDHLTRFSGITPGDLDP TS H+LHH+RTVYLRLRWLADAGC FLGHGL+ DFR+ NLTLP  QVIDTV+LWSL GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNKY+SHVAAGT S  L+ALYKYGWEVSWKLDG ++ 
Sbjct:  839 LPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRHSGSEV----------------NAIVMMDDYVVQSEPVVDHLTRFSGITPGDLDPATSRHNLHHMRTVYLRLRWLADAGCIFLGHGLDNDFRMCNLTLPPSQVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNKYRSHVAAGTFSTTLDALYKYGWEVSWKLDGGVSA 1062

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 1.680e-114
Identity = 187/240 (77.92%), Postives = 200/240 (83.33%), Query Frame = 0

Query:    1 MPRDRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGSLAT 240
            +P DRLPGKGDIVAIDAEFVSL VEESRLRGDGSKVVTKQGRQSLARVS +DGR S                     A V+MDDYVVQSEPVVDHLTRFSGITPGDLDP TS H+LHH+RTVYLRLRWLADAGC FLGHGL+ DFR+ NLTLP  QVIDTV+LWSL GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNKY+SHVAAGT S  L+ALYKYGWEVSWKLDG ++ 
Sbjct: 1402 LPPDRLPGKGDIVAIDAEFVSLTVEESRLRGDGSKVVTKQGRQSLARVSALDGRYSGSEA----------------NAIVMMDDYVVQSEPVVDHLTRFSGITPGDLDPATSRHNLHHMRTVYLRLRWLADAGCIFLGHGLDNDFRMCNLTLPPSQVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNKYRSHVAAGTFSTTLDALYKYGWEVSWKLDGGVSA 1625

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A7S2HCV8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCV8_9STRA)

HSP 1 Score: 234 bits (598), Expect = 7.100e-74
Identity = 124/232 (53.45%), Postives = 150/232 (64.66%), Query Frame = 0

Query:    6 LPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGS 237
            LPG G  VA+D EFVS+ VEES +  DG++ V  + RQ LARVS +D R                      T  VI+DDY++ +EP+VD+ TRFSG+T  DLDP TS HHL HLRT YL+LR L D G  F+GHGL  DFR+ N+ +P  Q+ DTV+LW LPGQRKISLRFLA  LL  +IQGETHDSIEDAR AL LY +Y     AG +   L+ LYKYG +  WK D S
Sbjct:   52 LPGHGTPVALDTEFVSVAVEESFIDADGAEHVNVEARQMLARVSAIDAR----------------------TNEVIIDDYILPTEPIVDYKTRFSGLTATDLDPLTSHHHLVHLRTAYLKLRLLVDKGAIFVGHGLRGDFRVVNMFVPPSQIADTVDLWYLPGQRKISLRFLAACLLDTDIQGETHDSIEDARGALLLYKRYIELQVAGKIDTTLQRLYKYGRKTGWKFDAS 261

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A836CIT6_9STRA (Exonuclease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT6_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.930e-73
Identity = 124/237 (52.32%), Postives = 158/237 (66.67%), Query Frame = 0

Query:    1 MPRDRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMH-HLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGT--VSEALEALYKYGWEVSWKL 234
            +P ++LPG+G +VA+DAEFV L +EE RLR DGS+VVTK  RQ LARVSVVD  G                        VI+DDY++Q+EPV+DHLTRFSG+   DL+P  S    L  LR  YL+LR L D GC  +GHGL KD R+ NL +P  QV+DT  +WSLPG+RK SLRFL+HYLL   IQ  THDS+ED+R+ALAL  KY+   A G+  ++ AL+ LY+YG+ V WK+
Sbjct:  159 IPPEKLPGEGAVVALDAEFVCLEMEEVRLRSDGSRVVTKPARQGLARVSVVDAEGQ-----------------------VIIDDYIIQTEPVLDHLTRFSGVVAEDLNPFLSQRPSLVPLRAAYLKLRCLVDRGCVLVGHGLAKDLRVINLVVPPSQVLDTAEMWSLPGRRKASLRFLSHYLLSERIQESTHDSVEDSRMALALCQKYEKLKAQGSDALARALDDLYQYGYSVEWKV 372

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A7S2HCK3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCK3_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.590e-72
Identity = 124/232 (53.45%), Postives = 150/232 (64.66%), Query Frame = 0

Query:    6 LPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGS 237
            LPG G  VA+D EFVS+ VEES +  DG++ V  + RQ LARVS +D R                      T  VI+DDY++ +EP+VD+ TRFSG+T  DLDP TS HHL HLRT YL+LR L D G  F+GHGL  DFR+ N+ +P  Q+ DTV+LW LPGQRKISLRFLA  LL  +IQGETHDSIEDAR AL LY +Y     AG +   L+ LYKYG +  WK D S
Sbjct:  194 LPGHGTPVALDTEFVSVAVEESFIDADGAEHVNVEARQMLARVSAIDAR----------------------TNEVIIDDYILPTEPIVDYKTRFSGLTATDLDPLTSHHHLVHLRTAYLKLRLLVDKGAIFVGHGLRGDFRVVNMFVPPSQIADTVDLWYLPGQRKISLRFLAACLLDTDIQGETHDSIEDARGALLLYKRYIELQVAGKIDTTLQRLYKYGRKTGWKFDAS 403

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: K8ZCB7_NANGC (PAB-dependent poly(A)-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZCB7_NANGC)

HSP 1 Score: 230 bits (587), Expect = 3.440e-71
Identity = 121/231 (52.38%), Postives = 153/231 (66.23%), Query Frame = 0

Query:    4 DRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKL 234
            + LPG+GD+V IDAEFV L +E + +   G++VV K+GRQ+LAR+S++D R                         V++DDYV+ SEPV+D+LTRFSGI   DLDP  S HHL   RT YL+LR L D G   +GHGL KDFRI N+ +P  QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K++     G +++ L  +Y+YG    WKL
Sbjct:  138 EALPGRGDLVGIDAEFVQLEMETASVLETGARVVFKEGRQALARLSLLDVRSDQ----------------------VMVDDYVLPSEPVMDYLTRFSGIVREDLDPSLSRHHLVTARTAYLKLRCLIDRGVILVGHGLKKDFRIINVYVPPAQVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKEGKLAQVLNGVYEYGRTTGWKL 346

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A4D9D4P1_9STRA (Exonuclease domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4P1_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.250e-67
Identity = 122/231 (52.81%), Postives = 154/231 (66.67%), Query Frame = 0

Query:    4 DRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKL 234
            + LPG+GD+V IDAEFV L +E + +   G++VV K+GRQ+LAR+S++D R                         V++DDYV+ SEPV+D+LTRFSGI P DLDP  S HHL   RT YL+LR L D G   +GHGL KDFRI N+ +P  QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K++     G +++ L  +Y+YG    WKL
Sbjct:  736 EALPGRGDLVGIDAEFVQLEMETASVLETGARVVFKEGRQALARLSLLDVRSDQ----------------------VMVDDYVLPSEPVMDYLTRFSGIVPEDLDPSLSRHHLVTARTAYLKLRCLIDRGVILVGHGLKKDFRIINVYVPPAQVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKEGKLAQVLNGVYEYGRTTGWKL 944

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A6G0XRY2_9STRA (Exonuclease domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRY2_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.860e-63
Identity = 119/230 (51.74%), Postives = 151/230 (65.65%), Query Frame = 0

Query:    5 RLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKL 234
            RLP +GD VAID EFV + +EE+ L+ DG+++VTK+ RQSLARVS++ G                       T  VI+DDYV+ +EPVVD+LTRFSG+  GDLDP  S H++  L+T Y++LR+L DAGC F+GHGL KDFRI N+ +P  QVIDTV L+  P  RKI+LRFL+ YLL   IQ ETHDSIEDAR AL L+NKY   V  G   + L  +Y  G    WK+
Sbjct:  831 RLPQRGDRVAIDTEFVIVEMEEAVLQTDGTRIVTKESRQSLARVSLLHGE----------------------TDNVIVDDYVLPNEPVVDYLTRFSGLVAGDLDPTQSRHNVVSLKTAYMKLRYLVDAGCVFVGHGLRKDFRIVNIFVPPEQVIDTVELYQQPSMRKIALRFLSAYLLKAEIQLETHDSIEDARAALKLHNKYLELVERGEFDKTLVEIYAAGRLCRWKI 1038

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A7S3LR56_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LR56_9STRA)

HSP 1 Score: 214 bits (545), Expect = 2.460e-63
Identity = 114/233 (48.93%), Postives = 146/233 (62.66%), Query Frame = 0

Query:    1 MPRDRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWK 233
            +P D+LP  GD+VAID EFV+L  EE ++  DG++VVT   R SLARVS + G G+                       V +DDY+V  E V DHLTRFSG+ PGDLDP +S HHL  LR  Y++LR L D GC F+GHGLNKDFR+ N+ +P   ++DTV L+ L G RK+SL FLA YLL   IQG  HDSIEDAR AL LY KY++    G + E L  +++ G   ++K
Sbjct:  285 LPLDKLPKNGDLVAIDCEFVALSTEEFKVLADGTRVVTAPPRLSLARVSCLSGDGT-----------------------VFIDDYIVTPENVEDHLTRFSGLVPGDLDPKSSKHHLIPLRIAYMKLRHLVDRGCIFVGHGLNKDFRVINIFVPPENILDTVELFYL-GHRKLSLAFLASYLLEEKIQGRIHDSIEDARTALKLYQKYETFRDQGILQEKLHEIFEQGQRRNYK 493

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BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Match: A0A1Y1IDX2_KLENI (USP domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDX2_KLENI)

HSP 1 Score: 223 bits (567), Expect = 4.570e-63
Identity = 118/233 (50.64%), Postives = 145/233 (62.23%), Query Frame = 0

Query:    7 PGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSVVDGRGSAXXXXXXXXXXXXXXXXXXXTAPVIMDDYVVQSEPVVDHLTRFSGITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNLTLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGSLA 239
            P  G ++ IDAEFV+L   E+ LR DGS  V +  R  LARVSVV G G                          MDDY+   EPV D+LTR+SG+ PGDLDPG S HH+  L+  YL+LR+L D GC F+GHGL KDFR+ NL +P  Q++DTV L+ L  QRKISLRFLA YLL ++IQ ETHDSIEDAR AL LY  Y+  VAAG   + L  +YKYG +  W++ G  A
Sbjct: 1046 PRAGLLLGIDAEFVALAPAETELREDGSAAVLRPARLGLARVSVVRGEGER-------------------AGGACMDDYIRAVEPVYDYLTRYSGLRPGDLDPGVSAHHITTLKKAYLKLRYLVDTGCRFVGHGLKKDFRMINLVVPPEQIVDTVELFHLKRQRKISLRFLASYLLKLDIQKETHDSIEDARTALRLYAMYKQLVAAGEFQDKLLEIYKYGRKYGWEVGGITA 1259

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6524.14376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G787_ECTSI	1.360e-117	77.92	Exonuclease domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5KX54_9PHAE	1.680e-114	77.92	Exonuclease domain-containing protein n=1 Tax=Ecto...	[more]
A0A7S2HCV8_9STRA	7.100e-74	53.45	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A836CIT6_9STRA	1.930e-73	52.32	Exonuclease-domain-containing protein n=1 Tax=Trib...	[more]
A0A7S2HCK3_9STRA	4.590e-72	53.45	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
K8ZCB7_NANGC	3.440e-71	52.38	PAB-dependent poly(A)-specific ribonuclease subuni...	[more]
A0A4D9D4P1_9STRA	1.250e-67	52.81	Exonuclease domain-containing protein n=1 Tax=Nann...	[more]
A0A6G0XRY2_9STRA	1.860e-63	51.74	Exonuclease domain-containing protein n=1 Tax=Apha...	[more]
A0A7S3LR56_9STRA	2.460e-63	48.93	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]
A0A1Y1IDX2_KLENI	4.570e-63	50.64	USP domain-containing protein n=1 Tax=Klebsormidiu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 11..213 e-value: 2.5E-23 score: 93.5
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 15..204 e-value: 9.9E-16 score: 58.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 8..229 e-value: 3.2E-38 score: 133.0
None	No IPR available	PANTHER	PTHR15728	UBIQUITIN SPECIFIC PROTEASE 52 / POLY A RIBONUCLEASE SUBUNIT PAN2	coord: 3..235
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 77..208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6524	contig	H-paniculata_contig6524:339..11172 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6524.14376.1	mRNA_H-paniculata_contig6524.14376.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6524 2..11205 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6524.14376.1 ID=prot_H-paniculata_contig6524.14376.1|Name=mRNA_H-paniculata_contig6524.14376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MPRDRLPGKGDIVAIDAEFVSLMVEESRLRGDGSKVVTKQGRQSLARVSV
VDGRGSAAAAAAATGGGGGGDDGSAATAPVIMDDYVVQSEPVVDHLTRFS
GITPGDLDPGTSMHHLHHLRTVYLRLRWLADAGCTFLGHGLNKDFRIFNL
TLPGHQVIDTVNLWSLPGQRKISLRFLAHYLLGMNIQGETHDSIEDARIA
LALYNKYQSHVAAGTVSEALEALYKYGWEVSWKLDGSLAT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013520	Exonuclease_RNaseT/DNA_pol3
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf