mRNA_H-paniculata_contig652.14371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig652.14371.1
Unique NamemRNA_H-paniculata_contig652.14371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.450e-97
Identity = 157/239 (65.69%), Postives = 190/239 (79.50%), Query Frame = 1 
Query:   61 MQGRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSL--GYQVMAPPGRTAAVAG-RGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRRAEA 768
            M GR+   TEVTLNVYDL+P+N++G+P+GLG FHSG+ VD REYT+AGGGGIF+H+PRKAPGARFR+AV+MGSF+G   +L R +D+LR+EFGPDRYNVLTRNCNSF+SA+CEEL+GKPIPGYVNRLAWMGSWFSCL+PP +LG+APV+ G + S   GY ++APPGR++  A  RGG    GS +AF GSGM+L+GS                 G REGELSDRRERMR AALRRAEA
Sbjct:    1 MYGRKGIPTEVTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRKAPGARFREAVNMGSFTGGSSSLSRAIDSLREEFGPDRYNVLTRNCNSFSSALCEELVGKPIPGYVNRLAWMGSWFSCLMPPGMLGDAPVNQGGSSSYNAGYSMLAPPGRSSGPAAVRGG----GSRNAFQGSGMTLAGSGGSAGTTSGSSTGGTGTG-REGELSDRRERMRMAALRRAEA 234
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.340e-59
Identity = 101/197 (51.27%), Postives = 131/197 (66.50%), Query Frame = 1 
Query:   58 AMQGRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSA 648
            A   R  R  EV LNVYDL   N++ +  G G +HSGV +  +EYT+AGGGGIF+H+P+ APGARFR +VSMG+F+G +  +D  + +LR +FGPD Y++L RNCNSF++A CE LL KPIP +VNR AWMGSWFSCLVPP +LG+APV+          +   P R            T +Y AF GSG+SL G+A
Sbjct:    3 AWGARAARPQEVLLNVYDLNEANEYLHSTGFGLYHSGVQIGGKEYTFAGGGGIFSHEPKDAPGARFRCSVSMGTFTGGQAAIDDAIASLRGDFGPDAYHILCRNCNSFSNAFCEALLNKPIPAWVNRAAWMGSWFSCLVPPQMLGQAPVN---------DLSGVPARA-----------TPAYAAFGGSGVSLGGTA 179
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.070e-54
Identity = 116/239 (48.54%), Postives = 150/239 (62.76%), Query Frame = 1 
Query:   67 GRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRRAEAASTSN 783
            GRR   T V LNVYDL+  N+ GY  GLGA+HSGV + DREYT+AGG GIF+  PR APGARFR+++++G+F G +G L R LD L+  F P  YNV+T+NCN F+ A+  +LL  PIPG+VNRL+ +G+ FSCL+PP LLG++PV+            AP G        GG +   S+ AF     SLS S    XXXXXXXX          EL+DRRE++RAA L R    ++ N
Sbjct:   21 GRRQAQTSVVLNVYDLSEANELGYSCGLGAYHSGVEIGDREYTFAGGAGIFDTTPRDAPGARFRESITLGTFEGGQGALSRALDELKPFFDPSSYNVITKNCNHFSDALSRQLLDTPIPGWVNRLSNIGNCFSCLIPPQLLGQSPVN------------APGG--------GGGSQAPSFQAFGXXXHSLSSSQNTAXXXXXXXX--------SNELNDRREKIRAATLARMNRGNSGN 231
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A6G0XPY1_9STRA (PPPDE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPY1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.160e-48
Identity = 95/228 (41.67%), Postives = 133/228 (58.33%), Query Frame = 1 
Query:   85 TEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRRAEA 768
            T VTLNVYD+   N + Y  GLGAFHSG+V+   E+++AGG GIF+ +P++A GA FR+++ MG F G      R++D +R EF  D YN+LTRNCN+F++  C  L+G+PIP +VNR+A+ GS FSCL+P  L+G+APV    T+  G+   A  G T             S   FAG G+SL+                      + + + RRER  AAAL+R E+
Sbjct:    5 TTVTLNVYDIVESNAYTYAWGLGAFHSGIVIGGVEFSFAGGAGIFSSEPKQAQGAIFRESIEMGEFEGTYQDAKRIIDDMRSEFQGDHYNLLTRNCNTFSNEACIRLVGQPIPAFVNRIAYFGSCFSCLIPKQLMGDAPVPASETKFAGFSKTASYGST-------------SVPVFAGEGLSLTAPTTRLLDST------------DDDEASRRERRVAAALKRLES 207
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: K0RSF7_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSF7_THAOC)

HSP 1 Score: 178 bits (451), Expect = 2.600e-47
Identity = 105/241 (43.57%), Postives = 141/241 (58.51%), Query Frame = 1 
Query:   67 GRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVD--GGATRSLGYQVMAPPGR-TAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGE-LSDRRERMRAAALRRAEAAST 777
            GR    T V LNVYDL+P N++   VGLG  HSGV V  REY++A GGG+F+  P++APGA+FR+++ +G F G    L+  +  LR+EFGPDRYN++ RNCN FA+A+   LLG+ IPG+VNRLA  G+  SCL+P  LL EAPV   GG+     YQV +P  + T AV              F+GSG +L   +               +  +  E L+DRRE+ + AAL R E   T
Sbjct:  100 GRTRMGTSVILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKEAPGAKFRESIELGHFEGGSAELNAAIGDLREEFGPDRYNLIRRNCNHFANALVWRLLGRTIPGHVNRLADYGNCCSCLIPRKLLEEAPVGPGGGSGNGSSYQVFSPKKQDTPAV--------------FSGSGHTLGAPSQEGRMSLLGSWRGRASQKKAQESLTDRREKAKRAALARMEGDET 326
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A1V9ZG04_9STRA (PPPDE domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZG04_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.010e-46
Identity = 94/229 (41.05%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:   85 TEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRRAEAA 771
            T V LNVYDL   N + + +G GAFHSG+ V   EY++AGG GIF   P++A GA FR+++ MG F G      RV+++LR +F    YN+LT+NCN+FA+  C +LLG PIP Y+NR+A+ GS+ SCL+P  L G APV+G  + S       P                 SY A+ G+G+SL+G++               A + E +   RRE+ RAAA++R E+A
Sbjct:    7 TAVILNVYDLMEANAYTHALGFGAFHSGLDVGGDEYSFAGGAGIFTCRPKQADGAVFRESIHMGYFDGSSMDARRVIESLRSDFQGSHYNLLTKNCNTFANEACLQLLGIPIPSYINRMAYFGSFLSCLLPKELAGNAPVEGSTSLSYSNTPSQP-----------------SYQAYGGNGISLNGTSS--------------ATMTEDDAEIRREKRRAAAMKRLESA 204
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 169 bits (427), Expect = 5.770e-46
Identity = 77/152 (50.66%), Postives = 104/152 (68.42%), Query Frame = 1 
Query:   67 GRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATR 522
            GR    T+V LN+YDLTP N++ YP+G G  HSGV +   EY++A G G+F+  PR+APGARFR++V +G++ G  G    V+D LR  FGP  YN+L RNCN FA A+C  LLG+ IP ++NRLA +G   SCL+P  +L ++PV  GA R
Sbjct:    6 GRTRMGTKVMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPREAPGARFRESVELGTYEGGSGDARVVIDDLRSSFGPSDYNLLKRNCNHFADALCWALLGRRIPAHINRLADIGVCLSCLLPRSVLEDSPVGPGAER 157
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A067CJN0_SAPPC (PPPDE domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJN0_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 1.230e-45
Identity = 96/233 (41.20%), Postives = 133/233 (57.08%), Query Frame = 1 
Query:   85 TEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRRAEAASTSN 783
            T V LNVYDL   N + + +GLGAFHSGV +   EY++AGG GIF   P++A GA FR+++ MG F G      +VLD LR EF   +YN+LT+NCN+F++ +C  LLG PIP YVNR+A++GS+ SCL+P  L G+APV+  +T +      A                  SY +F GSG+SL G+A                   + ++  RRE+ R AA+RR E    S+
Sbjct:    7 TAVILNVYDLMEANAYTHGLGLGAFHSGVDIAGDEYSFAGGAGIFTCRPKQADGAVFRESIPMGYFEGSSNDARQVLDELRSEFQGHQYNLLTKNCNTFSNELCLRLLGVPIPAYVNRMAYLGSFLSCLLPRELTGQAPVEADSTPTTANTPRA------------------SYTSFGGSGISLRGTAPSTDT--------------DEDMEVRREKRRLAAMRRIELMQESS 207
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: A0A7S2XZ08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ08_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.350e-45
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 1 
Query:   88 EVTLNVYDLTP-MNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPV 504
            +V LNVYDL+  +N +  P G G  HSGV V  REY++A G GIF+  PR+AP A FR+A+ +G+       + R L  L  EFGPD+Y++L +NCNSFA A C+EL+G+ IPG+VNRLA+MGS FSCL+PP  LGEAPV
Sbjct:   17 KVILNVYDLSQEVNQYAAPFGFGLHHSGVEVGGREYSFASGAGIFDSTPRQAPNAVFREAIEIGAVEDGEAGVQRALSNLEAEFGPDKYHILNKNCNSFADAFCQELVGRGIPGWVNRLAYMGSMFSCLIPPEYLGEAPV 156
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BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Match: W2M287_PHYPR (PPPDE domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2M287_PHYPR)

HSP 1 Score: 166 bits (421), Expect = 1.900e-44
Identity = 92/225 (40.89%), Postives = 129/225 (57.33%), Query Frame = 1 
Query:   85 TEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGGGIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVLTRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDGGATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAXXXXXXXXXXXXXXXAGIREGELSDRRERMRAAALRR 759
            T VTLN+YDL   N++  P+G G FHSGV +   E++YA G G+F+  PR+APGA+FR+++ MG F G      R+  +L  +F  D YN+ TRNCN++A A+C+ LL KPIPGYVNR A++GS+ SCL+P  L  +APV   +T S        P R+  +           Y  FAGSG ++  +                +      L+DRRE++R AALRR
Sbjct:    5 TAVTLNIYDLVEANEFMAPLGFGIFHSGVEIAGEEFSYASGAGVFSSSPRQAPGAKFRESIDMGFFEGTSQEAHRLAYSLSPDFEGDAYNLFTRNCNTYADALCQLLLNKPIPGYVNRAAYLGSFLSCLMPADLTDQAPVGDPSTPSR--ITNGTPRRSDFI-----------YTPFAGSGQTVGSTVDAS------------SSSESSTLADRREKVRLAALRR 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig652.14371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G204_ECTSI1.450e-9765.69PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835Z1G9_9STRA4.340e-5951.27PPPDE putative peptidase domain-containing protein... [more]
A0A7S2BXA3_9STRA1.070e-5448.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XPY1_9STRA1.160e-4841.67PPPDE domain-containing protein n=1 Tax=Aphanomyce... [more]
K0RSF7_THAOC2.600e-4743.57PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
A0A1V9ZG04_9STRA5.010e-4641.05PPPDE domain-containing protein n=1 Tax=Thraustoth... [more]
A0A7S1YZ49_TRICV5.770e-4650.66Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A067CJN0_SAPPC1.230e-4541.20PPPDE domain-containing protein n=3 Tax=Saprolegni... [more]
A0A7S2XZ08_9STRA1.350e-4555.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W2M287_PHYPR1.900e-4440.89PPPDE domain-containing protein n=8 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig652contigH-paniculata_contig652:9624..17917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.5
Seed ortholog evalue2.8e-81
Seed eggNOG ortholog2880.D7G204
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-07_003470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1778
Cds size750
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.9739687-UTR-H-paniculata_contig652:9623..96831622930763.9739687-UTR-H-paniculata_contig652:9623..9683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 9624..9683 +
1691481441.576796-UTR-H-paniculata_contig652:9623..96831691481441.576796-UTR-H-paniculata_contig652:9623..9683Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 9624..9683 +
1622930764.068785-UTR-H-paniculata_contig652:16949..179171622930764.068785-UTR-H-paniculata_contig652:16949..17917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 16950..17917 +
1691481441.6445937-UTR-H-paniculata_contig652:16949..179171691481441.6445937-UTR-H-paniculata_contig652:16949..17917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 16950..17917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.9912155-CDS-H-paniculata_contig652:9683..97131622930763.9912155-CDS-H-paniculata_contig652:9683..9713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 9684..9713 +
1691481441.5922728-CDS-H-paniculata_contig652:9683..97131691481441.5922728-CDS-H-paniculata_contig652:9683..9713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 9684..9713 +
1622930764.0075302-CDS-H-paniculata_contig652:12326..124741622930764.0075302-CDS-H-paniculata_contig652:12326..12474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 12327..12474 +
1691481441.6047726-CDS-H-paniculata_contig652:12326..124741691481441.6047726-CDS-H-paniculata_contig652:12326..12474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 12327..12474 +
1622930764.0197625-CDS-H-paniculata_contig652:13075..132881622930764.0197625-CDS-H-paniculata_contig652:13075..13288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 13076..13288 +
1691481441.6148777-CDS-H-paniculata_contig652:13075..132881691481441.6148777-CDS-H-paniculata_contig652:13075..13288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 13076..13288 +
1622930764.0335107-CDS-H-paniculata_contig652:14333..145011622930764.0335107-CDS-H-paniculata_contig652:14333..14501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 14334..14501 +
1691481441.6256502-CDS-H-paniculata_contig652:14333..145011691481441.6256502-CDS-H-paniculata_contig652:14333..14501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 14334..14501 +
1622930764.0529697-CDS-H-paniculata_contig652:16758..169491622930764.0529697-CDS-H-paniculata_contig652:16758..16949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 16759..16949 +
1691481441.635148-CDS-H-paniculata_contig652:16758..169491691481441.635148-CDS-H-paniculata_contig652:16758..16949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 16759..16949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig652.14371.1prot_H-paniculata_contig652.14371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig652 9684..16949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig652.14371.1

>prot_H-paniculata_contig652.14371.1 ID=prot_H-paniculata_contig652.14371.1|Name=mRNA_H-paniculata_contig652.14371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MQGRRPRSTEVTLNVYDLTPMNDWGYPVGLGAFHSGVVVDDREYTYAGGG
GIFNHDPRKAPGARFRQAVSMGSFSGDRGTLDRVLDALRDEFGPDRYNVL
TRNCNSFASAMCEELLGKPIPGYVNRLAWMGSWFSCLVPPHLLGEAPVDG
GATRSLGYQVMAPPGRTAAVAGRGGSAGTGSYDAFAGSGMSLSGSAAGAG
ASSGSAGNASGAGIREGELSDRRERMRAAALRRAEAASTSNGGTNMKSA*
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mRNA from alignment at H-paniculata_contig652:9624..17917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig652.14371.1 ID=mRNA_H-paniculata_contig652.14371.1|Name=mRNA_H-paniculata_contig652.14371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8294bp|location=Sequence derived from alignment at H-paniculata_contig652:9624..17917+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCTTTCTAGACTGACTGCATTAGGGTGCCTGTCCTGGTCTGATAACTG
ATACTTCGCCATGCAAGGTCGACGACCAAGGTCTACAGAGGTGAGGTGCC
TAAAAAATTCACGATTTTGAAAGTTTAGCCCCTCTGACTTCTTGAGACAG
AGAGAGAAGAGGAATGTACTCTCCTGTATCCTATACTACACACAGTACAT
TCCATTGCAGTGAAGACAATACTGTAGTGTACCCCACAGCTGCTGTACAC
AGTCCAGGTACTTTGATTGCTGTTGATAAGAACACGTACCGTCTGCTCCA
TGTGCTGGCTACTGTATTGGCTGCACAGTACCAGTTACCTTTTGGGAAAG
GCTAAGACTTGATTGTTACGACTAGTCTTGTTGATGAATGTTTTAAGCAG
GTTGCCCTCTGTCGACAGTACGGACAGCGTGAACTTTGTTGTACTGTAGT
ATTGTCTGTTGCACCGTGGTCACTGTAGTTCAGTACTACTGTCTATTATT
GTCTATTGAGCATAGTTATCTTCGACGTCCAAGATACGTACCATTTGCCG
CAGGATTGATGAATGAACGAATACGAACAGGTGGAATCCAATCCTGTAAC
TGTCACTGTACCTGTTTGCAACCGCTGTATCGTGTTACCGTGTTGCGTCT
ACAAACGGAGTAAAAAATGCACGAGCTGATTTTTGACTGCCAAGTGTTCT
CACTGTCCAAATAGTTGGTGGACATCCCAAGAACAATCCTCTGCTTCTTA
CTTACCAACGGAGACATCACAGATAGTGCCGTTACAGCATGTCATAGTGA
TGCGCACTCGGAAAAATTAGCCCCGACCTACCCTCTTCTCGACTGACGCC
GTTGGTCCTGAGCGACGCCCGATTGCTGTCGGTGGGAACGCTCCGGTACA
TCTTCGCGTCGGCGTAGTGGGACGACTTGAGCCGTGACTGGAGGGAACCT
TGAATCCTTTCGCGCCGTGGGCCAGTATGGCGTTGCGGGGCTGATGGAGA
CGTTGTGTGGACTACATTCTCCCTACGCCAGCCTCGCCGAGGACTTCTCG
TCCTACCTTTGCCATTCGTTAGCCAATCAAGCCCACGGCAGTGACCCACC
TTCGCTCGTGTTCGGGATTCACGATGAACAAATACGGACGATGCCATTCC
GGCCTGGAGCCTGCGATCCGGGCGCAGCGTGCTAAGGCTACGGTGCTTTA
TGCCACGGCAGGGCAAGGACATATCGACGACATCGCCATGCCCCCCGCCG
CCACTCCGTGTCCTCACGGCCAGACCCGGCCGGTGTCTGCATTACACCTT
CACACTGTTGTCTGGTAAGACGTTCGCCCTGCCGCCCGACGGACACCGGA
TCATCGCCAGCGGAACTAGAGCCATCTGGGCAAAACTGGTATCAGTTAGG
GAGCAATCGAGTTAATTGCTCGTAGTGGGAGTCCCGGTCGAGTCGGACGC
TTTTGTGGAAGTCTCCCTCTGCAGGGCACTGGGCCAGCTGCGAATGGCCA
CAGTGGCACGCCCCGTAGCGGCCATGAGCGATAAGTGGAGATAGCCTCGC
TTCTTTCAAGCATGTAGTGTGTCCCTCGAGCGCCGGTCCGCTACCTTTGA
ACGCAATTTCGCCCCGTGGTTGGGGAAGAAGGATGGCCAGCGAAGAGCAC
ACAAAAATTCCATGTTAGCGGCTAAACATTTCCTCGACCTCCAGGCAGCG
ACATGTCACGGTGATTGCGCTAAAAGTGGGTTCAGAAAGTATCTGCCTAC
CAACCCTCGCGACCTGCAATGAGCGTGCGTTTGCATCCATGTCTCACCGC
CCGGAGGGTCTGACGTGGGCGTCTCAAGTCTTGGCAGTATCGCGATAGGC
AATTCTCCCCGCGTTCTTCAAGTTGGATTGGGCGTATTTTCGTATGCACC
TAACCTTCCGCCCCGCGGTGTATAACACAACACGCCCACTGTCCGGGCCA
TATTCCTTCCTGTACGACGCATGGTTGTCGATGATATGGCTGTCGACAAC
TTCGGGAAGGTGCCATCAGAATAGTGGGTCTCCGCCGCCTCTGCCGGAAG
AGGCGAAAAATTTGCCATCCCTCGGCCTCTGCTGATGTTCTTGCTGCGCA
TAGAGCCCCGCCACCCGCCCGGCACAAGCGGTGCTTGGAAATATCCTCCA
CCGTGCGCATTCTGCTGCATACCGGGACAAGGATCCAGCTAGCTGCCGGG
GCGATGACTCAGCAACCTATTTTGATGGTGATTTTGCCGGTGGATCTTTT
CACGTAGATTATTCCGAGTTAGACCGCGTCTACTCGGGGAGGGGGCAGCT
CTTCTGAGGCAGCGTGGAAGTGGTGCATCCACACACTGAGAGAGCAAAAA
ATGGGCTCCGAACTATCAATGAAGAGAGAAGGAAGTCATGTGTTCAGGGG
AAAACAAGAGGAATTATCAACGCTAGCTGGTGGAAACCGGTTGTGCCAAA
AAGGTTTTTGTTACAAAATAATTAAAGAGATTGTCGACAGCGGAGGATAG
GTACCCTTGACCCTCCAGAAGCGAAGTGATTTTTTCCTGCAAAGGGCTGT
AGACAAGTAAACCTATGGAATGACCAAATAAAACAAATCTCGTTTCGCCT
TGTTGTGCTGCGCCTTCACTGGGAAAAAGCAATTAACACTTGTGCACAAG
ATATTGCCAAACGCAGCTGCCCTGGACCCCTTCGTGACTCTCGTCCGAGC
CAGGTAACCCTCAATGTGTACGATCTGACTCCGATGAACGACTGGGGCTA
TCCCGTGGGCCTGGGAGCGTTCCACTCCGGTGTTGTGGTGGATGACCGAG
AGTACACATACGCAGGCGGTGGCGGCATATTCAACCACGACCCGCGCAAA
GGTGAAATAATTGAATAATTAGTATATTCGAGTACATCGGATGCTGGATT
AAGGTTGCGGTCACTAGCCCTCAGGTGCGCCAGGCGCCGGCGCTGTTTTC
GAAAAGTGTTGTCTATCTAACAGTCCCACCGAGAAGAAGCAGGAGGCCGT
TGTTCTTCAGAAAGGTGCGAGGGGTTAGGGTTTTGACCGTTTGGTGTTGG
TTGATGACCGAGATATTTCCAACCGTATTATAGGCTCTGACCAAGCGCGG
AGTTATAGCCAAGAAGTTTATAGCTGTACTATGGGATCTGGCCAAGCGCT
GGGTTATGACCGAGGAATTTCTAGCTGTAATATGGGATCGGGCCACGTGC
TGGCTTTTGAAATAAGAAAATTCTAACCGTGAGATGGGATCTAGCCAATC
ACAAACGTGTATATGTCACCGGTTGTTGTGTAGGGGACCGAGGTTCAAGT
ACCCCAGGGATCCTAGGAATGTCCATGCTGTCCACATTGCTAGCACTAAA
TAAATTTTCGCAGACGAGAAGTATCTGATTTTGTTGCTTTTCCCATGTTC
CCCCTACCCGTGTCTGGCCGATCAAAAACAAAACCGATAACGCTCCACGC
AGCTCCTGGAGCTCGCTTTCGACAGGCCGTGAGCATGGGGTCATTCAGCG
GCGACCGGGGGACATTAGACCGAGTTTTGGACGCATTGCGAGATGAATTT
GGGCCGGATCGATACAACGTGTTGACCCGAAATTGTAATAGTTTTGCGTC
TGCCATGTGCGAAGAGCTGCTGGGCAAACCTATTCCAGGGTATGTCAATC
GCCTCGCGTGGATGGGTAAGTATGTGCATGCGTGTAGAATGTACGTAAGC
CGTCAGCCTTGTCAGATCTTTGCTATGTAAATGTTCTGTCAATTTATGCC
ATATTATACTCAACTTGTGGTATATTACGTTTGGGCGATAGTGGTCATTT
CAGAACAGTTTGTCAAGTTTGAACTAGAGTGAATTCTGAACGGAATCTTG
CAGTGGGTCATGGCATAACTTTTGGATTATGACTAAATGGGTACTAACTA
CATGGAGAAAGCGCTCACTGCACGCGCGTCGTATAGCCGTTGCTGTAACC
AGCACGTGATCTGTAGTTGATGATCGTGAGCAAGGTGAATCAATCCTATT
TCATGTCGTTGTTTCGATATCGAACATTGCTCGTTTATGTCAGCACGCTC
ACGATTATAACTAGAATCGGTTTGTATTCGGCCATGTGGGCTTTGTGCAA
TTGCTCCAGGTGAGCTGTGGTCGTAGGGTTTAAGGGGAGCAAACTTTTGT
TCACGCACAGCTATATAGCTCTCTCAGCACAATGTACTCCACTCTGTCAC
AACGGGGATAGGTGGTCAATCTCAATCTCCAGGCCTATCGCAGCACGCCG
GACACGAGTATACAATGTGTTGTGAAGTTGTGGGTGTTTGCGAAAAAGGT
TTTGTCCCCTATTTTTTGCCGATCGATGGTCATCTCTTCCAGGCTGTTTC
ATCAGGTGATCTATCTGTCGTTAAATAGTATGCCAAGTCAGTAGTAGTAT
TTCTGTGGGTATCTGGAGAAACGTCATGGGAGGTAGATTCAGCCATCATT
TTACATGTTTCGCAACGGCCCACCTCCTTTCACCCTTGTGGCAAAACCAC
TTCGCCGGATATAGGTGTATTATTACTGTCATGTTCCAGTGTCAGTCATA
TTCAATTGTCATCATATTTTATTCTCGTTGTCATGTTCCATCGTCATTAT
CATATTGGATTTTTAGTATCATGTTCCGTTGTCATTGTCGTGCCTCATTG
TTTATTGTCACCGTCATATTCCATTGTTTCACTGTCACTGTCATGTTTCA
TTGTCATCAGGCTCGTGGTTTTCGTGCCTTGTGCCGCCGCACCTGCTGGG
AGAGGCTCCTGTTGATGGTGGGGCGACTAGGTCGTTGGGCTACCAGGTCA
TGGCACCGCCTGGTCGAACAGCAGCCGTCGCCGGGCGGGGAGGGAGTGCT
GGAACGGGATCATACGACGCTTTCGCAGGTGCGATGACGGTGGTTGTGGT
GGTTTGTGCGCTGGCGCAGTTTTTTTTCTGTTGTTGATCGCGGAAGAGGA
ATGAGTTTATCTGTATCATCATCCATGAAAATATCAACCATGGATATATG
TAGGTGGTGGTGGTGGTGGTTCGTGTGTTAATTACGGCTGCTTTTGACGC
CCTTGACCGCAGAAAAGGGATGTATTGATTTTTGCAATCGTTGATGAAGA
TATCAATTTTCATGTACATTCTTATTTGTCTTTTTTGTTTGATTTTTTGT
CATCATTTAACGTGATCTATCTCTGTTTTGTTTTTTTTGCGGCAAATGTC
CTAAAGTGCTCGTGTGCGGTCAGGACGGGGTTTCATGTCGGTACAACGCA
CAGAGCAAGTAAGTGTTTCGTACTTGGGGTGATTGTCTCCGGTGCTGAGC
CCGACACTCCTAATAATCGGCGGTGTAGTTCAGTAGTGACCAGAGTAGGA
TACAGTAGTGCGTGGCTTTGTCAAGATCCGGATTAGCAAGCCGTCATTTT
GGTCGTCGTTAAGTGTAGCTATGTAGCACTCTTGTATTTCTTGATGGTCT
GTGTGGAGTTTGTAGAATTGAGCGTTTTTGTTCGATGCTTATTACAGCAG
TGCGGGATGTTGATGTTAGTTGTTCACCTGGATCAAGTGGCTCGTGCATT
GCACTCACAACAGTCGTACAAGCATGCACAATACCTTATTTGTAGGAGAA
AGAGAGGGGGTGGGTACGAACTTGGTCCCCCCCTCTTGAGTAGTCCACTT
CTATCGTCATTTTCCAACGTCCCCCTTTAAGCATCCTGTCGTTTAAAACG
TGTAAAATCTAATTGTTCCCCCTGGTTCTCAGTTCACCCCCCCCTCCCCC
CCCTCCCCCTTTCGGAATGTCGTCAGTTTGTGGAATTATTACGGAGGAGC
ATAATAATCAAGAGCAAATTAGAAAATTGACAATTTGAGGTGTAACTCAT
GCAATACGATATGCACCAATCGGTTGCTGCATGCCTGTGCAAGTGTTTTT
AGAGTGTGTTTTTGTTTTCAGCTAGAAGCGAAAATCTGTACACCAACGGG
GAAAAAAAAAAAAATCAGTTTCCGAAAAAACAAAAAAAATGCTCCTGACT
ATTATGTTCCTCCGTAATAGTCATCTCTTAGCGGTATTAGTTTCTTGACC
GAGTAAGTGTGCCTCCAATTTGATCGGATTTTTTTGTCATGGGCATGGTT
TTCAAGTTTGTACGTTCCTAGTTATCGTGCATGTTTCGAACCGGATAAGT
ATTATTTCCATCGTTGTCGATGCCCTCTTGATGTTAAACTTGCAGTCGCA
GTTGAGGTTTGTCCTTGGCAAGGGGCGTACATGTTGTCGCTGTCGTGGTG
TAGTTGATGTGATTTTTTTTTTTGGGGGATGTTTTTTGTAAGGGTTCCTG
CTCCTGCTTGAAGTGCTCTATTAGTCACTTGTTGTCTTGTAAGCTGCTGT
ATTTTGAGGACTCATGGATGACTCGTATTTCGTCATCAGCACTCGGACAC
AAGATCAATCGCTACGCAGTATATCTATCTTACCTGCAAAATGCCGACTG
CAGGTTGCGGTTAATAGGTTGCATAACGAGAGCAAGAGTGATGTAAGCGA
GAGGAGAAGCGAAGGCTATACAAGTAGTGTTTGCCCTTTGGTTGTGTCGC
AAACGTTGCATTCATGTTGTGTGCATGCTCCGAACGCAGCGTATCCAGCA
CCTATGATCAACTTCGATATTACTGCCTGTCAACGAAGGCCTTTTCGACC
CAATTAAAGTTCTCCTTTTGAAAAAAAATGAAATCTGTAGGAAAAATACG
GGCACCTTTTTCCTTAAATTTTGCTGATGAGTGTTTGCACTTGCAGATTA
AATTTATCTACATAGCCCTAACGTGGGTACAATGGAGTTATCATATGAGC
TTTAGAGTTATACTTGAATTGACTGGCAGGGTTAATTACCAAATGAGAAT
TTCGGTTACTTAAATGTATAATTATTTTTTCTCGTTGTGCCCCCCCCCCC
CGCCTCTGAATAGTGTGTTCACCTTATCGATGAGTAATCCAGCACCTCCA
AGGTACTGAGCAAACCTATTTTCGTTTTGCAGTCAAGGTCATGCTTTTTT
TTTTATCATACAGTTTTTTTTTGGGGTTTTTTTGCATCTCTGCTTCTACT
CGAGGGTACGCTTTCCTAGCCGTATTCCCCCTAATTCAAGTTGATACCCT
CCCCGCCTTTCGAATCATTGCGTTTTGTACGGCAGGGTCAGGAATGAGCT
TGTCGGGCAGCGCCGCCGGGGCTGGCGCAAGTAGTGGCAGTGCTGGCAAT
GCATCGGGGGCAGGGATACGAGAAGGCGAGCTGTCGGATAGAAGGGAGCG
CATGCGAGCGGCTGCGTTGCGGCGGGCGGAAGCGGCGTCGACATCGAATG
GCGGCACGAACATGAAATCTGCATGATAGTTTTTCACTATTATGTCTGCT
GTTTTAGCGTGTCACGTCAAGTTCGTGTTGGGTCGGTTCTGTAGTTGACC
GACGAAAATGGATGGCGTGTAGCTTGATACACTGTGATGCTTTACTTTCA
GGCAGGCTGGGTTAGCCGTCTGCTTTTGATGCACTTCATCAGGATACGTT
TGAAAGGGTATTCATTGAGAGCTAGCTGGCTGTGAGGTATCGTTGTGCCT
ATTTTATTTGGAGCTGTAGGTAATCGCCCAGAGGTCGATTTCAGGGCGGG
TGTCGTATGTTGTGTAGTTTTGTACGTACTTATATGAGGGGCACGTGCGT
ATGAGAGGTGCGGGAGATCGTCCGCTTCGTTTATGGGAAATAGTGCCCAC
GGGGTATAATTCAATTGCTCAATTTCGCGTAGGCCGCCGCTGTATAGGTT
ATCGGTAGAAGTGCGCAAGGAGGAATGACCGTTGAATATGGTGTTTTTTA
GTATCATGATGTTGTTGGACATGTTGCCGTAGGTTAGACGGAAATGAACC
CCTGACCTGTTTGCACCACGAAGCACTCCGCTTTGCGGTGGATGTTGGTG
CACCTGCTCATCGATTATCGGAGACAAGGACCATGTCACACGATCTTTTT
TGCCATCAAATCACATGAGTACTTTTGTCATATCCTCCTTGGTTACACAA
CGACAAAACGAGAGGAGGGTAGGAAGTTTTAGGATGTAATCTTCGCCCTG
TATTTTTCGGAACTGACTGACATTGATGCTGAACCACGACATCTTATTTG
GTACAATCGGCAAGCCGTAGGATATATGTTGCCTTTAGAAGGTACGTTGT
ACGCCGGCACTCGTCCATTATTGATTGCGTTTCACGTTTAATTGAAGTGC
AATAGTATATCTTTCTCTTGGCGGGTTGCGGGTAGAGGAAACATGTTTTG
TCTAGTTTTTCCGATGGTGTGTTGAGAGCTATCCAATATATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig652:9624..17917+

>mRNA_H-paniculata_contig652.14371.1 ID=mRNA_H-paniculata_contig652.14371.1|Name=mRNA_H-paniculata_contig652.14371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig652:9624..17917+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGTCGACGACCAAGGTCTACAGAGATGCAAGGTCGACGACCAAG
GTCTACAGAGGTAACCCTCAATGTGTACGATCTGACTCCGATGAACGACT
GGGGCTATCCCGTGGGCCTGGGAGCGTTCCACTCCGGTGTTGTGGTGGAT
GACCGAGAGTACACATACGCAGGCGGTGGCGGCATATTCAACCACGACCC
GCGCAAAGGTAACCCTCAATGTGTACGATCTGACTCCGATGAACGACTGG
GGCTATCCCGTGGGCCTGGGAGCGTTCCACTCCGGTGTTGTGGTGGATGA
CCGAGAGTACACATACGCAGGCGGTGGCGGCATATTCAACCACGACCCGC
GCAAAGCTCCTGGAGCTCGCTTTCGACAGGCCGTGAGCATGGGGTCATTC
AGCGGCGACCGGGGGACATTAGACCGAGTTTTGGACGCATTGCGAGATGA
ATTTGGGCCGGATCGATACAACGTGTTGACCCGAAATTGTAATAGTTTTG
CGTCTGCCATGTGCGAAGAGCTGCTGGGCAAACCTATTCCAGGGTATGTC
AATCGCCTCGCGTGGATGGCTCCTGGAGCTCGCTTTCGACAGGCCGTGAG
CATGGGGTCATTCAGCGGCGACCGGGGGACATTAGACCGAGTTTTGGACG
CATTGCGAGATGAATTTGGGCCGGATCGATACAACGTGTTGACCCGAAAT
TGTAATAGTTTTGCGTCTGCCATGTGCGAAGAGCTGCTGGGCAAACCTAT
TCCAGGGTATGTCAATCGCCTCGCGTGGATGGGCTCGTGGTTTTCGTGCC
TTGTGCCGCCGCACCTGCTGGGAGAGGCTCCTGTTGATGGTGGGGCGACT
AGGTCGTTGGGCTACCAGGTCATGGCACCGCCTGGTCGAACAGCAGCCGT
CGCCGGGCGGGGAGGGAGTGCTGGAACGGGATCATACGACGCTTTCGCAG
GCTCGTGGTTTTCGTGCCTTGTGCCGCCGCACCTGCTGGGAGAGGCTCCT
GTTGATGGTGGGGCGACTAGGTCGTTGGGCTACCAGGTCATGGCACCGCC
TGGTCGAACAGCAGCCGTCGCCGGGCGGGGAGGGAGTGCTGGAACGGGAT
CATACGACGCTTTCGCAGGGTCAGGAATGAGCTTGTCGGGCAGCGCCGCC
GGGGCTGGCGCAAGTAGTGGCAGTGCTGGCAATGCATCGGGGGCAGGGAT
ACGAGAAGGCGAGCTGTCGGATAGAAGGGAGCGCATGCGAGCGGCTGCGT
TGCGGCGGGCGGAAGCGGCGTCGACATCGAATGGCGGCACGAACATGAAA
TCTGCATGAGGTCAGGAATGAGCTTGTCGGGCAGCGCCGCCGGGGCTGGC
GCAAGTAGTGGCAGTGCTGGCAATGCATCGGGGGCAGGGATACGAGAAGG
CGAGCTGTCGGATAGAAGGGAGCGCATGCGAGCGGCTGCGTTGCGGCGGG
CGGAAGCGGCGTCGACATCGAATGGCGGCACGAACATGAAATCTGCATGA
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