mRNA_H-paniculata_contig652.14373.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig652.14373.1
Unique NamemRNA_H-paniculata_contig652.14373.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig652.14373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig652contigH-paniculata_contig652:28560..28963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size406
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.9054792-UTR-H-paniculata_contig652:28559..286541622930763.9054792-UTR-H-paniculata_contig652:28559..28654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 28560..28654 +
1691481441.5523205-UTR-H-paniculata_contig652:28559..286541691481441.5523205-UTR-H-paniculata_contig652:28559..28654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig652 28560..28654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.922748-CDS-H-paniculata_contig652:28654..289631622930763.922748-CDS-H-paniculata_contig652:28654..28963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 28655..28963 +
1691481441.5656025-CDS-H-paniculata_contig652:28654..289631691481441.5656025-CDS-H-paniculata_contig652:28654..28963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig652 28655..28963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig652.14373.1prot_H-paniculata_contig652.14373.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig652 28655..28963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig652.14373.1

>prot_H-paniculata_contig652.14373.1 ID=prot_H-paniculata_contig652.14373.1|Name=mRNA_H-paniculata_contig652.14373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MHSSRAMRCSRSVTTSCRKSLRARFISICSALAARSLFSESSISSRNSRI
LTSLALLLPWLALRRSLLSSSSMPSRFDNTSSVRIPVSVTSSLLRSDSAF
LDI
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mRNA from alignment at H-paniculata_contig652:28560..28963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig652.14373.1 ID=mRNA_H-paniculata_contig652.14373.1|Name=mRNA_H-paniculata_contig652.14373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=404bp|location=Sequence derived from alignment at H-paniculata_contig652:28560..28963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAAGATCTTTACGTTTGCTGCCGCAGCATCGAGTTGGGCCTGCAGCCCA
TGAACCTCTTTAACCGTGCTCGAGGCGTCCTCCTCCCTTGCCCCTATGCA
TTCTTCGAGAGCGATGCGCTGCTCCCGCTCCGTGACTACCTCCTGCCGCA
AGTCACTGAGAGCACGCTTCATATCCATCTGCTCGGCGCTCGCCGCTAGA
AGCCTGTTCTCTGAGTCTTCTATCTCCTCCCGTAACTCCCGGATATTAAC
CTCTCTGGCTTTGTTGCTACCCTGGCTGGCCTTGAGGCGTTCATTGCTCT
CTTCCAGCTCCATGCCGAGTCGGTTCGACAACACTTCGAGTGTTCGCATT
CCGGTCTCCGTCACTTCGAGCTTACTGCGTAGCGACTCAGCGTTCCTCGA
CATC
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Coding sequence (CDS) from alignment at H-paniculata_contig652:28560..28963+

>mRNA_H-paniculata_contig652.14373.1 ID=mRNA_H-paniculata_contig652.14373.1|Name=mRNA_H-paniculata_contig652.14373.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig652:28560..28963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATTCTTCGAGAGCGATGCGCTGCTCCCGCTCCGTGACTACCTCCTG
CCGCAAGTCACTGAGAGCACGCTTCATATCCATCTGCTCGGCGCTCGCCG
CTAGAAGCCTGTTCTCTGAGTCTTCTATCTCCTCCCGTAACTCCCGGATA
TTAACCTCTCTGGCTTTGTTGCTACCCTGGCTGGCCTTGAGGCGTTCATT
GCTCTCTTCCAGCTCCATGCCGAGTCGGTTCGACAACACTTCGAGTGTTC
GCATTCCGGTCTCCGTCACTTCGAGCTTACTGCGTAGCGACTCAGCGTTC
CTCGACATCATGCATTCTTCGAGAGCGATGCGCTGCTCCCGCTCCGTGAC
TACCTCCTGCCGCAAGTCACTGAGAGCACGCTTCATATCCATCTGCTCGG
CGCTCGCCGCTAGAAGCCTGTTCTCTGAGTCTTCTATCTCCTCCCGTAAC
TCCCGGATATTAACCTCTCTGGCTTTGTTGCTACCCTGGCTGGCCTTGAG
GCGTTCATTGCTCTCTTCCAGCTCCATGCCGAGTCGGTTCGACAACACTT
CGAGTGTTCGCATTCCGGTCTCCGTCACTTCGAGCTTACTGCGTAGCGAC
TCAGCGTTCCTCGACATC
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