mRNA_H-paniculata_contig6519.14366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6519.14366.1
Unique NamemRNA_H-paniculata_contig6519.14366.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6519.14366.1 vs. uniprot
Match: D7G7V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.890e-33
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 VYHKRREQSVD-----IVNGAQNHFELDFEVRATFDRGMNELTAAGLRVQRLVCAPTMQLEMRVQLESRILGDLIIL 216
            VYHKRREQSVD      V+GA NHFELDFEVRATFDR M +LTAAGLRVQRLVC+PTMQ EMRVQLESRILGDLIIL
Sbjct:  136 VYHKRREQSVDDMYSQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 212
[Close]
BLAST of mRNA_H-paniculata_contig6519.14366.1 vs. uniprot
Match: A0A6H5L330_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L330_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.000e-32
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 VYHKRREQSVD----IVNGAQNHFELDFEVRATFDRGMNELTAAGLRVQRLVCAPTMQLEMRVQLESRILGDLIIL 216
            VYHKRREQSVD     V+GA NHFELDFEVRATFDR M +LTAAGLRVQRLVC+PTMQ EMRVQLESRILGD+IIL
Sbjct:  138 VYHKRREQSVDDMSQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 213
[Close]
BLAST of mRNA_H-paniculata_contig6519.14366.1 vs. uniprot
Match: A0A2R5GCW9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCW9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.750e-11
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 VYHKRREQSVDIVNGAQNHFELDFEVRATFDRGMNELTAAGLRVQRLVCAPTMQLEMRVQLESRILGDLIIL 216
            V H RREQS+D     +NH+E ++E+R TFD+ M  +TAA LRV RL+ + TM + +  +L++ ++  LI++
Sbjct:  401 VRHTRREQSIDSFGNIENHWEFEWELRMTFDQQMQNMTAAQLRVTRLMLSETMDVGLAARLKATLVDGLIVM 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6519.14366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7V4_ECTSI6.890e-3383.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L330_9PHAE1.000e-3282.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R5GCW9_9STRA9.750e-1141.67Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6519contigH-paniculata_contig6519:394..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog2880.D7G7V4
Hectar predicted targeting categoryother localisation
EggNOG OGs2E713@1,2SDP3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.4714706-CDS-H-paniculata_contig6519:393..6121622930763.4714706-CDS-H-paniculata_contig6519:393..612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 394..612 +
1691481441.38802-CDS-H-paniculata_contig6519:393..6121691481441.38802-CDS-H-paniculata_contig6519:393..612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6519 394..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6519.14366.1prot_H-paniculata_contig6519.14366.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6519 394..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6519.14366.1

>prot_H-paniculata_contig6519.14366.1 ID=prot_H-paniculata_contig6519.14366.1|Name=mRNA_H-paniculata_contig6519.14366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
VYHKRREQSVDIVNGAQNHFELDFEVRATFDRGMNELTAAGLRVQRLVCA
PTMQLEMRVQLESRILGDLIIL*
back to top

mRNA from alignment at H-paniculata_contig6519:394..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6519.14366.1 ID=mRNA_H-paniculata_contig6519.14366.1|Name=mRNA_H-paniculata_contig6519.14366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig6519:394..612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTACCATAAGCGACGAGAGCAATCGGTGGATATAGTCAACGGAGCACA
AAACCACTTCGAGCTGGACTTCGAGGTTCGAGCGACGTTTGACCGAGGCA
TGAACGAGCTCACCGCGGCGGGACTTCGCGTACAGCGACTTGTTTGTGCC
CCGACCATGCAACTGGAAATGAGGGTACAATTAGAGTCACGAATACTGGG
AGATTTGATCATCCTTTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6519:394..612+

>mRNA_H-paniculata_contig6519.14366.1 ID=mRNA_H-paniculata_contig6519.14366.1|Name=mRNA_H-paniculata_contig6519.14366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig6519:394..612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTACCATAAGCGACGAGAGCAATCGGTGGATATAGTCAACGGAGCACA
AAACCACTTCGAGCTGGACTTCGAGGTTCGAGCGACGTTTGACCGAGGCA
TGAACGAGCTCACCGCGGCGGGACTTCGCGTACAGCGACTTGTTTGTGCC
CCGACCATGCAACTGGAAATGAGGGTACAATTAGAGTCACGAATACTGGG
AGATTTGATCATCCTTTAGGTGTACCATAAGCGACGAGAGCAATCGGTGG
ATATAGTCAACGGAGCACAAAACCACTTCGAGCTGGACTTCGAGGTTCGA
GCGACGTTTGACCGAGGCATGAACGAGCTCACCGCGGCGGGACTTCGCGT
ACAGCGACTTGTTTGTGCCCCGACCATGCAACTGGAAATGAGGGTACAAT
TAGAGTCACGAATACTGGGAGATTTGATCATCCTTTAG
back to top