mRNA_H-paniculata_contig65172.14364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65172.14364.1
Unique NamemRNA_H-paniculata_contig65172.14364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-5
Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHKIQGKYPISLDAAGQHI 285
            W+ D+GASNH+TN+LS +  L  P  G D +I+G+GS L +  +G   ++    ++VP  L+ V C+P ++ N+  + ++    P+ +     H 
Sbjct:  636 WLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRLCIDNPLLISFFSCHF 726          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5
Identity = 31/99 (31.31%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKIQGKYP--ISLDAAGQHIDDK 294
            WV+DSGA++H+TN+ S++   + P +GED VI+G+   L +  +G   ++  +  ++P    + C P +  +L  + K+   YP  I  D+ G  + DK
Sbjct:  293 WVTDSGATSHITNSTSQLQSAQ-PYSGEDSVIVGNSDFLPITHIGSA-VLTSNQGNLPLRDVLVC-PNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDK 388          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A438DCV3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DCV3_VITVI)

HSP 1 Score: 51.2 bits (121), Expect = 2.230e-5
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI 240
            W+ DSGAS+H+T+NLS +  +  P  G D +++GDG+ L +   G   +  H++    +   V C+P +  NL  + K+
Sbjct:  133 WLLDSGASHHVTSNLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 208          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR)

HSP 1 Score: 51.2 bits (121), Expect = 2.370e-5
Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI 240
            W+ DSGAS+H+TN+LS +  L  P  G + +++GDGS L +  +G   L F+S + +  +  V C+P ++ N+  + ++
Sbjct:  159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNSHSLLLTS--VLCVPLVSKNIISISQL 234          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A822Y3D1_NELNU (gag_pre-integrs domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822Y3D1_NELNU)

HSP 1 Score: 50.8 bits (120), Expect = 2.990e-5
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHK--IQGKYPISLDAAGQHIDD 291
            W+ DSGAS+H+T++LS +  L  P  G D V++GDGS L +   G   +   S T    TL  V C+P +  NL  +++  I     I    +  H+ D
Sbjct:   44 WLLDSGASHHVTSDLSNL-SLHSPYQGTDDVMIGDGSGLQITYTGSTTIPTSSRT---ITLHNVLCVPSMKKNLISIYQLCISNHVSIEFSPSTFHVKD 138          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 50.1 bits (118), Expect = 5.030e-5
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKIQGKYPISL--DAAGQHIDD 291
            +W++DSGASNH+T N+S +     P  G + + +GDG+ L +   G    I H++      L V   P++  NL  +HK       SL  D  G  I D
Sbjct:   24 IWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGS--TILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKD 119          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A1J3D5H7_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D5H7_NOCCA)

HSP 1 Score: 49.7 bits (117), Expect = 5.250e-5
Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE------VSCLPELNFNLFPLHKIQGKYPISLDAAGQHIDDK 294
            WV DSGA++H+T++LS +  L +P  G + VI+G+G+ L +   G         T +P+TL+      V C+P +  NL  ++++     +S++    H   K
Sbjct:   42 WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITHTGF--------TSLPSTLKSLSLHNVLCVPSIQKNLISVYRLCNANQVSVEFFPAHFQVK 135          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A822XKD9_NELNU (gag_pre-integrs domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XKD9_NELNU)

HSP 1 Score: 49.7 bits (117), Expect = 9.110e-5
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHK--IQGKYPISLDAAGQHIDD 291
            W+ DSGAS+H+T NLS +  L  P  G D V++GDGS L +   G   +   S T    TL  V C+P +  NL  +++  I     I    +  H+ D
Sbjct:  176 WLLDSGASHHVTFNLSNL-SLHSPYQGTDDVMIGDGSGLQITHTGSTTIPTSSRT---FTLHNVLCVPSMKNNLVSIYQFCINNHVSIEFSPSTFHVKD 270          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR)

HSP 1 Score: 49.7 bits (117), Expect = 9.190e-5
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNL 222
            W+SD+GASNHMT   S + ++R+  +G D V++GDGS L +  +G    I    T +P   +V  +P+L  NL
Sbjct:  340 WISDTGASNHMTGKTSMLSNIRQ-CSGTDFVLIGDGSPLPIHGIGD-SFIKQKNTTLPLH-DVLLVPDLTKNL 409          
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5H2XXR9_PRUDU (Integrase catalytic domain-containing protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XXR9_PRUDU)

HSP 1 Score: 49.7 bits (117), Expect = 9.630e-5
Identity = 29/99 (29.29%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI--QGKYPISLDAAGQHIDDK 294
            W+ DSGA++H+TN++S +     P  GED V +GDG+ L ++ +G    + H+ T       V  +P++  NL    +        ++LD+ G  + D+
Sbjct:  382 WLIDSGATSHITNDISNLSS-PSPYTGEDKVYIGDGTGLSINHIGSS--LLHTPTTSFKLKNVLHVPQMKHNLLSAFQFVKDNSCSLTLDSDGSLVKDR 477          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A5N6NBX7_9ASTR1.090e-531.58Integrase catalytic domain-containing protein n=1 ... [more]
Q9SV56_ARATH1.490e-531.31Uncharacterized protein AT4g28900 n=1 Tax=Arabidop... [more]
A0A438DCV3_VITVI2.230e-532.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LS31_9ASTR2.370e-534.18Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A822Y3D1_NELNU2.990e-534.34gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A5E4GCQ9_PRUDU5.030e-533.33PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]
A0A1J3D5H7_NOCCA5.250e-530.10Uncharacterized protein (Fragment) n=1 Tax=Noccaea... [more]
A0A822XKD9_NELNU9.110e-535.35gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A2K3L0D5_TRIPR9.190e-539.73Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A5H2XXR9_PRUDU9.630e-529.29Integrase catalytic domain-containing protein n=3 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65172contigH-paniculata_contig65172:526..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930763.2806094-CDS-H-paniculata_contig65172:525..8191622930763.2806094-CDS-H-paniculata_contig65172:525..819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65172 526..819 +
1691481441.3129766-CDS-H-paniculata_contig65172:525..8191691481441.3129766-CDS-H-paniculata_contig65172:525..819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65172 526..819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65172.14364.1prot_H-paniculata_contig65172.14364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65172 526..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65172.14364.1

>prot_H-paniculata_contig65172.14364.1 ID=prot_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDL
IFHSTTDVPATLEVSCLPELNFNLFPLHKIQGKYPISLDAAGQHIDDK
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mRNA from alignment at H-paniculata_contig65172:526..819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65172.14364.1 ID=mRNA_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig65172:526..819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTTC AAAAATGTATGACCTTCGCAAGCCTGTGGCAGGGGAAGATGTGGTAATAT TGGGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAATTTGATTTG ATTTTTCACTCCACTACTGACGTGCCTGCCACACTTGAAGTATCATGCTT ACCGGAGTTGAACTTCAACCTTTTTCCCCTCCACAAAATCCAAGGAAAGT ATCCAATATCTTTGGATGCAGCAGGTCAACACATCGATGACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig65172:526..819+

>mRNA_H-paniculata_contig65172.14364.1 ID=mRNA_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig65172:526..819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTTC
AAAAATGTATGACCTTCGCAAGCCTGTGGCAGGGGAAGATGTGGTAATAT
TGGGGGATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAATTTGATTTG
ATTTTTCACTCCACTACTGACGTGCCTGCCACACTTGAAGTATCATGCTT
ACCGGAGTTGAACTTCAACCTTTTTCCCCTCCACAAAATCCAAGGAAAGT
ATCCAATATCTTTGGATGCAGCAGGTCAACACATCGATGACAAGATGTGG
GTGTCTGATTCTGGTGCAAGTAACCACATGACGAACAATCTTTCAAAAAT
GTATGACCTTCGCAAGCCTGTGGCAGGGGAAGATGTGGTAATATTGGGGG
ATGGATCGATTCTGGTGGTAGATTTGGTGGGAAAATTTGATTTGATTTTT
CACTCCACTACTGACGTGCCTGCCACACTTGAAGTATCATGCTTACCGGA
GTTGAACTTCAACCTTTTTCCCCTCCACAAAATCCAAGGAAAGTATCCAA
TATCTTTGGATGCAGCAGGTCAACACATCGATGACAAG
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