mRNA_H-paniculata_contig65172.14364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5N6NBX7_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX7_9ASTR) HSP 1 Score: 52.4 bits (124), Expect = 1.090e-5 Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHKIQGKYPISLDAAGQHI 285
W+ D+GASNH+TN+LS + L P G D +I+G+GS L + +G ++ ++VP L+ V C+P ++ N+ + ++ P+ + H
Sbjct: 636 WLFDTGASNHVTNDLS-VLSLHNPYDGTDDLIIGNGSSLPITHIGSTTILI---SNVPVHLQHVLCVPLISRNIISISRLCIDNPLLISFFSCHF 726
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: Q9SV56_ARATH (Uncharacterized protein AT4g28900 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SV56_ARATH) HSP 1 Score: 52.0 bits (123), Expect = 1.490e-5 Identity = 31/99 (31.31%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKIQGKYP--ISLDAAGQHIDDK 294
WV+DSGA++H+TN+ S++ + P +GED VI+G+ L + +G ++ + ++P + C P + +L + K+ YP I D+ G + DK
Sbjct: 293 WVTDSGATSHITNSTSQLQSAQ-PYSGEDSVIVGNSDFLPITHIGSA-VLTSNQGNLPLRDVLVC-PNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDK 388
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A438DCV3_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DCV3_VITVI) HSP 1 Score: 51.2 bits (121), Expect = 2.230e-5 Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI 240
W+ DSGAS+H+T+NLS + + P G D +++GDG+ L + G + H++ + V C+P + NL + K+
Sbjct: 133 WLLDSGASHHVTSNLSNL-SIHAPYNGSDDIMIGDGTGLPITHTGSLSI--HTSNAQFSLTNVLCVPSMKKNLISISKL 208
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5N6LS31_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS31_9ASTR) HSP 1 Score: 51.2 bits (121), Expect = 2.370e-5 Identity = 27/79 (34.18%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI 240
W+ DSGAS+H+TN+LS + L P G + +++GDGS L + +G L F+S + + + V C+P ++ N+ + ++
Sbjct: 159 WLFDSGASHHITNDLSAL-SLHAPYDGTEELVIGDGSSLKITHIGSLSLTFNSHSLLLTS--VLCVPLVSKNIISISQL 234
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A822Y3D1_NELNU (gag_pre-integrs domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822Y3D1_NELNU) HSP 1 Score: 50.8 bits (120), Expect = 2.990e-5 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHK--IQGKYPISLDAAGQHIDD 291
W+ DSGAS+H+T++LS + L P G D V++GDGS L + G + S T TL V C+P + NL +++ I I + H+ D
Sbjct: 44 WLLDSGASHHVTSDLSNL-SLHSPYQGTDDVMIGDGSGLQITYTGSTTIPTSSRT---ITLHNVLCVPSMKKNLISIYQLCISNHVSIEFSPSTFHVKD 138
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 50.1 bits (118), Expect = 5.030e-5 Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 1
Query: 1 MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKIQGKYPISL--DAAGQHIDD 291
+W++DSGASNH+T N+S + P G + + +GDG+ L + G I H++ L V P++ NL +HK SL D G I D
Sbjct: 24 IWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGS--TILHTSNAKFHLLNVLHTPQVAHNLLSVHKFVSDNHCSLIFDEIGVSIKD 119
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A1J3D5H7_NOCCA (Uncharacterized protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D5H7_NOCCA) HSP 1 Score: 49.7 bits (117), Expect = 5.250e-5 Identity = 31/103 (30.10%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE------VSCLPELNFNLFPLHKIQGKYPISLDAAGQHIDDK 294
WV DSGA++H+T++LS + L +P G + VI+G+G+ L + G T +P+TL+ V C+P + NL ++++ +S++ H K
Sbjct: 42 WVVDSGATHHITSDLSNL-SLHQPYTGGEEVIVGNGNGLPITHTGF--------TSLPSTLKSLSLHNVLCVPSIQKNLISVYRLCNANQVSVEFFPAHFQVK 135
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A822XKD9_NELNU (gag_pre-integrs domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XKD9_NELNU) HSP 1 Score: 49.7 bits (117), Expect = 9.110e-5 Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLE-VSCLPELNFNLFPLHK--IQGKYPISLDAAGQHIDD 291
W+ DSGAS+H+T NLS + L P G D V++GDGS L + G + S T TL V C+P + NL +++ I I + H+ D
Sbjct: 176 WLLDSGASHHVTFNLSNL-SLHSPYQGTDDVMIGDGSGLQITHTGSTTIPTSSRT---FTLHNVLCVPSMKNNLVSIYQFCINNHVSIEFSPSTFHVKD 270
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR) HSP 1 Score: 49.7 bits (117), Expect = 9.190e-5 Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNL 222
W+SD+GASNHMT S + ++R+ +G D V++GDGS L + +G I T +P +V +P+L NL
Sbjct: 340 WISDTGASNHMTGKTSMLSNIRQ-CSGTDFVLIGDGSPLPIHGIGD-SFIKQKNTTLPLH-DVLLVPDLTKNL 409
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Match: A0A5H2XXR9_PRUDU (Integrase catalytic domain-containing protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XXR9_PRUDU) HSP 1 Score: 49.7 bits (117), Expect = 9.630e-5 Identity = 29/99 (29.29%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 4 WVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLIFHSTTDVPATLEVSCLPELNFNLFPLHKI--QGKYPISLDAAGQHIDDK 294
W+ DSGA++H+TN++S + P GED V +GDG+ L ++ +G + H+ T V +P++ NL + ++LD+ G + D+
Sbjct: 382 WLIDSGATSHITNDISNLSS-PSPYTGEDKVYIGDGTGLSINHIGSS--LLHTPTTSFKLKNVLHVPQMKHNLLSAFQFVKDNSCSLTLDSDGSLVKDR 477 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65172.14364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig65172.14364.1 >prot_H-paniculata_contig65172.14364.1 ID=prot_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp MWVSDSGASNHMTNNLSKMYDLRKPVAGEDVVILGDGSILVVDLVGKFDLback to top mRNA from alignment at H-paniculata_contig65172:526..819+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig65172.14364.1 ID=mRNA_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig65172:526..819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig65172:526..819+ >mRNA_H-paniculata_contig65172.14364.1 ID=mRNA_H-paniculata_contig65172.14364.1|Name=mRNA_H-paniculata_contig65172.14364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig65172:526..819+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |