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Homology
BLAST of mRNA_H-paniculata_contig65.14341.1 vs. uniprot
Match: D8LDZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ5_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.250e-71 Identity = 133/226 (58.85%), Postives = 151/226 (66.81%), Query Frame = 1
Query: 148 ATSSQQDDRCLVNCRLRRNTFLPGETVEGAVKFVVSSRDQAHINIEEATVQAHGYVKVDPRWINLPTSIRSLFSQNAGATNP---------------QAGPMARYKGLDDENSACVFASEVAVVLRKERLFQ-EEPASFSFSVVLPDKLTPTFRGVGIRYAYAITVSIRRAVQPPQVGAGRRLFGLVRRTRPAI-----AGFSTKDLHVPFTVLSEGPGFSSGLEG 762
A DRC V C L+RNTFLPGE V G +KF VSS DQ ++IEEATVQAHGYVKVDPRWI LPTS+R LF Q G+ QA P+ RY GL D+ SACVFASEVAV+L+KER+ PASF FS VLP+ LTPTFRGVG+RYAYA+TV +RRA+ PP A RL GLVRR RPA AGFST D+HV FTVLS GP G+ G
Sbjct: 18 AQQGSPQDRCRVTCALQRNTFLPGEHVRGTIKFGVSSEDQDGVDIEEATVQAHGYVKVDPRWIALPTSLRRLFRQEEGSGGXXXXXXGADGDRKPVDQAFPVPRYSGLTDDRSACVFASEVAVLLKKERVDGGRHPASFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRALPPPP--AAGRLLGLVRR-RPAAGSSASAGFSTTDVHVSFTVLSRGPPAFDGVGG 240
BLAST of mRNA_H-paniculata_contig65.14341.1 vs. uniprot
Match: A0A6H5KF53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF53_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.150e-69 Identity = 125/216 (57.87%), Postives = 146/216 (67.59%), Query Frame = 1
Query: 148 ATSSQQDDRCLVNCRLRRNTFLPGETVEGAVKFVVSSRDQAHINIEEATVQAHGYVKVDPRWINLPTSIRSLFSQNAGATN------------PQAGPMARYKGLDDENSACVFASEVAVVLRKERLFQ-EEPASFSFSVVLPDKLTPTFRGVGIRYAYAITVSIRRAVQPPQVGAGRRLFGLVRRTRPAI-----AGFSTKDLHVPFTVLSEGPG 741
A DRC V C L+RNTFLPGE V G +KF VSS DQ ++IEEATVQAHGYVKVDPRWI LPTS+R LF Q G+ QA P+ RY GL D+ SACVFASEVAV+L++ER+ P SF FS VLP+ LTPTFRGVG+RYAYA+TV +RR++ PP A RL GLVRR RPA AGFST D+HV FT ++G G
Sbjct: 18 AQQGSPQDRCRVTCALQRNTFLPGEHVRGTIKFGVSSEDQDGVDIEEATVQAHGYVKVDPRWIALPTSLRRLFRQEEGSGGGASAADGDRKPVDQAFPIPRYSGLTDDRSACVFASEVAVLLKQERVDGGRHPTSFRFSFVLPENLTPTFRGVGVRYAYAVTVRVRRSLPPPP--AAGRLLGLVRR-RPAAGSSASAGFSTTDVHVSFTGTADGIG 230
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 237.3 |
| Seed ortholog evalue | 7.8e-60 |
| Seed eggNOG ortholog | 2880.D8LDZ5 |
| Preferred name | RGP1 |
| KEGG ko | ko:K20477 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515 |
| EggNOG free text desc. | Rab guanyl-nucleotide exchange factor activity |
| EggNOG OGs | KOG4469@1,KOG4469@2759 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Exons | 4 |
| Model size | 798 |
| Cds size | 741 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig65.14341.1 >prot_H-paniculata_contig65.14341.1 ID=prot_H-paniculata_contig65.14341.1|Name=mRNA_H-paniculata_contig65.14341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
MQQHQHQHHQYPKNKQKQGYDSPPSSFTNTATSSQQDDRCLVNCRLRRNT
FLPGETVEGAVKFVVSSRDQAHINIEEATVQAHGYVKVDPRWINLPTSIR
SLFSQNAGATNPQAGPMARYKGLDDENSACVFASEVAVVLRKERLFQEEP
ASFSFSVVLPDKLTPTFRGVGIRYAYAITVSIRRAVQPPQVGAGRRLFGL
VRRTRPAIAGFSTKDLHVPFTVLSEGPGFSSGLEGFSPPPPPIHEKG back to topmRNA from alignment at H-paniculata_contig65:48218..52237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig65.14341.1 ID=mRNA_H-paniculata_contig65.14341.1|Name=mRNA_H-paniculata_contig65.14341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4020bp|location=Sequence derived from alignment at H-paniculata_contig65:48218..52237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAACTACACTCGGTGACTTTGCAGACTATCGAAGTACAGGATACTTTC
GAGAGAGATGCAACAACACCAGCACCAGCACCATCAGTACCCAAAGAACA
AGCAAAAACAAGGGTATGATTCCCCGCCAAGTAGTTTCACTAATACCGCC
ACGAGCAGCCAGCAGGATGACCGATGCTTGGTGAACTGCAGGTTGCGGCG
GAACACGTTCTTGCCTGGCGAGACTGTAGAGGGAGCGGTCAAGTTTGTGG
TGTCGTCGAGGGATCAGGCGCACATCAACATTGAGGAGGTGTGCACAGCG
CCACGTATTGCAACATATTGCGATTTAGAGTGATAAACTTCTTGTGCGCT
GCATTGTCGTGCTATCCACCGTGTCCATGACTTCCTGTTCTGTACCCTGT
TTAATTGTTTGAAAGCAAAAAGAATGGTATCCATCGCTGCTGATGCATTA
ACACGACATTTTTTAAAGTCCATCCTCTGAGTGCATCAGTCTGGTGTGCT
AGTGTAGTGTTGCTGCGTTGAGTAATCTCTGTGTGTGACATTGTCTGTTT
GAATTAGCGAAGAATGCAGGTTACCTGCTCCTGTGGAGCCTGCTGCTTCG
TTTGACGGTATTATTGCAGGACTGAAACATCGAGTACCCACCTACTATGT
ACCGCATTAAATATACCACCTCTGTCACGTAAGTCTGGCTTATTAAGGTA
CTTGGTTAATATTGCGCAATTGTGATTTTCGTGAAAGATAAAGCATATCA
CTCCAAAGCCTACAGGTTCCGCTTTTTTCAATTCGAAATGGTTGAGAACT
GGCTATCTCAAACACTTTTTTTCGGAAAGGACATGTTTAGCAAAAACAGC
CGATTACGCCAAAACGGCTGAAAACCGTGGTTAATGGTTGATAAAAGTCT
CAACGAGACTTCCGATTAAGAATTGGTTTTATGCTTGTATCCCTTGGTGT
TTCATAGGACGTCGTACAATAAAATCGTTTTTCATTATTTTCATCCTCCC
CATCAACCGACCAATTGAAAGCCGCGTCGTAGGCGGCTCTGTCAACCGGG
ACCAAGTGGTCCAAAAGCCCCTCACGCTGCCTTTTTCTCCTCTCGGTATG
CCCAATGTCTGAATCGTTTCCCCCCCAGCGCTTTCAATACTTTTTTATAC
CGCTTGAAGAGGCTTTGCCAAACCAACTCTCCACTCTTAAGAGTGTGGAG
GGAGCGCTAACGTACGTTAGACACCTTCGTAGAGGGAGATAAGAGCATGT
ACAGCCAGTATTACGCGGAGATACTAGAGTTGTTTTAGCAGAGCTTCTTC
AAGCGGTATAACCAAGTATTGAGAGCGCTCGGGGGAAACGATTCAGACAT
TGGGCATACCGAGAGGAGAAAAAGGCAGCGTGAGGGGCTTTTGGACCACT
TGGTCCCGATTGACAGAGTCACCTACGACGTGGCTTTCAATTGGTCGGTT
GATGGGGAGGATGAAAATAATGAAGAACGATTTTATTGTACGACGTCCTA
TGAAACGCCAAGGGATACAACGCAAAAAACCATTTCTTAATTGGAGGTCT
CCTTGAGACTTTTATCAACCATTAACCAGGATTTTCAGCCGATCTCGGCC
TATTCTGCTTTTCTTGCAACACCATGTTCTCAATCATTTCGAAATGATTT
TTTTAAACATGTAACCTGAACGTGTCGGCTTTCGAATGGTATGCTTTGTT
TTTCACGAAATCCCAACTTGCACAAGATATGTACAAAGTACCGTTATAAA
CCAGACTTACGGGACAGGTAGCGTAAATTATCGTAGCTGTAGGGGGCTAC
GCCTGTCCTTTACTCGATTTGTATTTGAACAGTGCACCATGACTCGTGGC
GCTTGTAGATGGCCCGCTATACTCCAAGCAGGCGCACTGTCTGTACAAAC
TAGTCACTGGTATAGAATTGAAAATGCTCTATCTTCCGAAACGACGACTT
CCTGTCACGCTAGCGTGTTCATTTGCATCTTACCCATTTTTAGCGCCGTT
TGCCAGCGAATAATCGATGAATAATCCCTACCTAATCCGTACCCCAACAT
GGGGGGAAACGACGCCTAAGACATTGTCACGGAGATATAAAACAGTCGCT
GTTCAGACAGACGGTCCAGTACAGGCAATAGGTGAAGGGAGACAAGTATT
TAATTGGCAGACTCAAGATTTTGCCCACAACCACTGTTGCACTCCACATT
TGTTGTCTGATGCTCTTTTGTTCCGAGGCAGCTCCGGCGCTGAGAGGGTT
GCATGATAGAAACGTCGAGGATGCTCTTTGTCGTCAAAGCGGATTTTTGT
CGCAAGCTCTGCCGAGCACGTTCTTAGTGGCGTCGCACAGGCGAGGGCTA
CTGTGCAGCGGTTTCTTATTTAGCGCGATATCTTGGCGGGCAGTATCTGC
CGCTCTGTGAGGTACTCGTTTTCTCTGCCTCGGCTTCACGGTACTGGACA
AGAGTACGCAAGTAACGAGTTCAATGTTTTGTTGCCCCATCCTATCTTCT
CTACAGTCCAAATACTGCTGAGGATAATCGTCAGAATGGGGTTTTGAGCT
TCACCCGAAATAGTTCCTTCTACTATTTCCTTCTCGTCATCCGGCTGGTA
CTGTGCGCACACCGCTGTCCGATACGCGCGCTCTGTGGATTTGTTGTTAC
ACACAGGCGACAGTTCAAGCGCATGGTTACGTGAAAGTTGACCCGAGGTG
GATAAACCTCCCTACCTCTATACGAAGTCTCTTCAGTCAAAACGCAGGGG
CGACAAACCCGCAAGCTGGGCCGATGGCAAGGTGAGAAAACCTCAAGGAC
CTTGATCCCCAGCTCTTTTGACGTCAAATCGACGAGAGCGTGATTTCCCT
TTTTGATGGGGCGAAATTCATCTGTCTCACTGTTTAGACTTTGGCCAACC
GCGTGCGGATACTCCGGCTACAGTGCTCGTGTAGCCTCATGCTTGGTGTC
ATCATTGAACGTAACGTTATTAAATCTTGACAAGTGAAAATATTTTTCAC
GAATGAAGTACATTCGCATACCGTGCACAGGTACAAAGGTCTGGACGACG
AAAATTCCGCTTGCGTCTTCGCCTCCGAAGTGGCCGTGGTGCTAAGAAAA
GAACGCCTGTTCCAAGAAGAGCCGGCCTCCTTCTCTTTCAGCGTCGTATT
GCCGGACAAGCTCACACCTACGTTCAGGGTAAGCAAGTTAGTAGTGCTCA
TGTAACCGCAACCCACAATTTCTCCCCATGATGAATATAGAAGATGCTGA
CATCGTAGCCATTTCTCCTTGAGGCTGGCATAAGATGCCCTGTTTCTTCT
TGCTCGATCTGTGACGACCTGTACGCCATCAAAACGAAGTTGACTGGCGC
AAGGGTCGCGTGAGTACAATGCTTTCCTTGCCCATTCTGTGGGATAGGTC
TTTTCTCAACAAGATGAGGCAGTCATGACCCCGTTTGTGTTCGCGATTTG
GTTTTGATGTACTGTATGTAGTCGGTTAACAAGCTTGAGCGTCATTCAAA
ATAGATTCAACGACCTTTCCAGAAGTTAAATCTGTCTGGCACATATCCAT
GGCCAATCGGCCGGTTGGCCTTGGGCAGACCAGTCACCACGTGGGAGCCA
CCACGGTGGCTACTTGGCCCGGGTCGATCTTTCCGCCGGCAACGCCGACC
AAGGTCAGCAAGCTATCCAAGAGGTCTAGAACTCTAACATGCTGAATTTT
GCCCTTCCTCAACCTTCCGCTCATTCATCGCGTTGATACGGGGACCCTTT
CTCCGTATGCCATTTTCCTGTTCTGTGCTGCAGGGTGTAGGAATACGATA
CGCCTACGCCATTACCGTCAGCATCCGTCGTGCGGTGCAGCCCCCTCAGG
TGGGGGCGGGCAGGCGGCTGTTTGGACTCGTCAGGAGAACTCGGCCAGCC
ATTGCCGGGTTTTCCACGAAAGATTTGCATGTACCCTTTACCGTGCTCTC
TGAGGGCCCAGGGTTTTCTAGCGGGTTGGAGGGATTTTCGCCGCCGCCGC
CGCCGATACATGAGAAGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig65:48218..52237+ >mRNA_H-paniculata_contig65.14341.1 ID=mRNA_H-paniculata_contig65.14341.1|Name=mRNA_H-paniculata_contig65.14341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig65:48218..52237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAACACCAGCACCAGCACCATCAGTACCCAAAGAACAAGCAAAA
ACAAGGGTATGATTCCCCGCCAAGTAGTTTCACTAATACCGCCACGAGCA
GCCAGCAGGATGACCGATGCTTGGTGAACTGCAGGTTGCGGCGGAACACG
TTCTTGCCTGGCGAGACTGTAGAGGGAGCGGTCAAGTTTGTGGTGTCGTC
GAGGGATCAGGCGCACATCAACATTGAGGAGATGCAACAACACCAGCACC
AGCACCATCAGTACCCAAAGAACAAGCAAAAACAAGGGTATGATTCCCCG
CCAAGTAGTTTCACTAATACCGCCACGAGCAGCCAGCAGGATGACCGATG
CTTGGTGAACTGCAGGTTGCGGCGGAACACGTTCTTGCCTGGCGAGACTG
TAGAGGGAGCGGTCAAGTTTGTGGTGTCGTCGAGGGATCAGGCGCACATC
AACATTGAGGAGGCGACAGTTCAAGCGCATGGTTACGTGAAAGTTGACCC
GAGGTGGATAAACCTCCCTACCTCTATACGAAGTCTCTTCAGTCAAAACG
CAGGGGCGACAAACCCGCAAGCTGGGCCGATGGCAAGGCGACAGTTCAAG
CGCATGGTTACGTGAAAGTTGACCCGAGGTGGATAAACCTCCCTACCTCT
ATACGAAGTCTCTTCAGTCAAAACGCAGGGGCGACAAACCCGCAAGCTGG
GCCGATGGCAAGGTACAAAGGTCTGGACGACGAAAATTCCGCTTGCGTCT
TCGCCTCCGAAGTGGCCGTGGTGCTAAGAAAAGAACGCCTGTTCCAAGAA
GAGCCGGCCTCCTTCTCTTTCAGCGTCGTATTGCCGGACAAGCTCACACC
TACGTTCAGGGTACAAAGGTCTGGACGACGAAAATTCCGCTTGCGTCTTC
GCCTCCGAAGTGGCCGTGGTGCTAAGAAAAGAACGCCTGTTCCAAGAAGA
GCCGGCCTCCTTCTCTTTCAGCGTCGTATTGCCGGACAAGCTCACACCTA
CGTTCAGGGGTGTAGGAATACGATACGCCTACGCCATTACCGTCAGCATC
CGTCGTGCGGTGCAGCCCCCTCAGGTGGGGGCGGGCAGGCGGCTGTTTGG
ACTCGTCAGGAGAACTCGGCCAGCCATTGCCGGGTTTTCCACGAAAGATT
TGCATGTACCCTTTACCGTGCTCTCTGAGGGCCCAGGGTTTTCTAGCGGG
TTGGAGGGATTTTCGCCGCCGCCGCCGCCGATACATGAGAAGGGGGGTGT
AGGAATACGATACGCCTACGCCATTACCGTCAGCATCCGTCGTGCGGTGC
AGCCCCCTCAGGTGGGGGCGGGCAGGCGGCTGTTTGGACTCGTCAGGAGA
ACTCGGCCAGCCATTGCCGGGTTTTCCACGAAAGATTTGCATGTACCCTT
TACCGTGCTCTCTGAGGGCCCAGGGTTTTCTAGCGGGTTGGAGGGATTTT
CGCCGCCGCCGCCGCCGATACATGAGAAGGGG back to top
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