mRNA_H-paniculata_contig65.14339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65.14339.1
Unique NamemRNA_H-paniculata_contig65.14339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65.14339.1 vs. uniprot
Match: A0A6H5KX66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX66_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.560e-32
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:  166 DAEADELRREGAMNFWTLEFYDPILEKAFRRHYRSWVIPRIRVGVQIQIALNLLFGALELIYGYSAGTVIAVLCLRL 396
            DAEAD    E AM+ WTLEF+DPILEK+FR+HYRSWVIPRIRVGVQIQ+AL+LLFG+LEL  GY+AG V+ VLCLRL
Sbjct:    5 DAEADAQAIERAMSIWTLEFHDPILEKSFRKHYRSWVIPRIRVGVQIQMALHLLFGSLELTCGYTAGAVMGVLCLRL 81
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BLAST of mRNA_H-paniculata_contig65.14339.1 vs. uniprot
Match: D8LDZ6_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.890e-31
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:  115 TRSKAAAVVVSNYEEDPDAEADELRREGAMNFWTLEFYDPILEKAFRRHYRSWVIPRIRVGVQIQIALNLLFGALELIYGYSAGTVIAVLCLRL 396
            +++ AAAV  ++ EE+ DAEAD    E AM+ WTLEF+DPILEK+FR+HYRSWVIPRIRVGVQIQ+AL+LLFG+LEL  GY+AG V+ VLCLRL
Sbjct:    3 SKTAAAAVEGNSSEEEADAEADAQAVERAMSIWTLEFHDPILEKSFRKHYRSWVIPRIRVGVQIQMALHLLFGSLELTCGYTAGAVMGVLCLRL 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65.14339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX66_9PHAE4.560e-3275.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDZ6_ECTSI1.890e-3168.09Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65contigH-paniculata_contig65:45280..46150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog2880.D8LDZ6
KEGG rclassRC00295
KEGG koko:K01530,ko:K01769,ko:K11858
KEGG ReactionR00434
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004016,GO:0004383,GO:0004888,GO:0005034,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0008074,GO:0008150,GO:0008152,GO:0008179,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009268,GO:0009410,GO:0009628,GO:0009653,GO:0009847,GO:0009893,GO:0009975,GO:0009987,GO:0010033,GO:0010243,GO:0010447,GO:0010562,GO:0010604,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0030104,GO:0030145,GO:0030154,GO:0030425,GO:0030435,GO:0031000,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031683,GO:0032268,GO:0032270,GO:0032502,GO:0032991,GO:0033554,GO:0033674,GO:0033993,GO:0034641,GO:0034654,GO:0035556,GO:0035690,GO:0036270,GO:0036477,GO:0038023,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043167,GO:0043169,GO:0043279,GO:0043549,GO:0043934,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045121,GO:0045859,GO:0045860,GO:0045937,GO:0046058,GO:0046068,GO:0046390,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0052652,GO:0055086,GO:0060089,GO:0060255,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071470,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0098589,GO:0098805,GO:0098857,GO:0104004,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901700,GO:1901701,GO:1904321,GO:1904322,GO:1904359,GO:1904360,GO:2000479,GO:2000481
EggNOG free text desc.guanylate cyclase activity
EggNOG OGsCOG2114@1,KOG1023@2759,KOG4171@2759
EC3.4.19.12,3.6.3.1,4.6.1.2
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons2
Model size401
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.8929996-CDS-H-paniculata_contig65:45279..454321622930759.8929996-CDS-H-paniculata_contig65:45279..45432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 45280..45432 -
1691481439.7724605-CDS-H-paniculata_contig65:45279..454321691481439.7724605-CDS-H-paniculata_contig65:45279..45432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 45280..45432 -
1622930759.9076433-CDS-H-paniculata_contig65:45904..461501622930759.9076433-CDS-H-paniculata_contig65:45904..46150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 45905..46150 -
1691481439.783015-CDS-H-paniculata_contig65:45904..461501691481439.783015-CDS-H-paniculata_contig65:45904..46150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 45905..46150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65.14339.1prot_H-paniculata_contig65.14339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65 45280..46150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65.14339.1

>prot_H-paniculata_contig65.14339.1 ID=prot_H-paniculata_contig65.14339.1|Name=mRNA_H-paniculata_contig65.14339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MAKGGSIESAAEAGGGNWNPHTNSNANVGRRGSLLKFSTRSKAAAVVVSN
YEEDPDAEADELRREGAMNFWTLEFYDPILEKAFRRHYRSWVIPRIRVGV
QIQIALNLLFGALELIYGYSAGTVIAVLCLRLT
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mRNA from alignment at H-paniculata_contig65:45280..46150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65.14339.1 ID=mRNA_H-paniculata_contig65.14339.1|Name=mRNA_H-paniculata_contig65.14339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=871bp|location=Sequence derived from alignment at H-paniculata_contig65:45280..46150- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAGGGTGGTAGCATTGAATCAGCAGCGGAGGCAGGAGGGGGGAA
CTGGAATCCGCATACGAACTCTAACGCAAACGTTGGACGACGTGGGAGTT
TGTTGAAATTCTCAACGAGGAGCAAAGCCGCGGCGGTAGTGGTCAGCAAC
TATGAGGAGGACCCGGATGCCGAGGCGGACGAATTGAGACGAGAGGGGGC
GATGAATTTTTGGACTCTCGAGTTTTACGACCCCATTTTGGAAAAGGTAA
CACGTACATCTAGTGATTACGCAGGAACATGGGGCTAGTGTGGGGATATA
CTTGAAGTGTTCCACAATCTCCAACAACGAAGAGCACCCAGAGTGCGCCC
TATCTCTAGTAACGTTTGGTCATCGCTCTCGGTACTGCGTTTGCTGGTAC
GGCATTGACTGCCCACCACGAACGTCTTGTGATCCGACGTTTGTGCGAGG
ATGCGGATCGGGTTTATGATTGCATGGCGCGCAAAATGCTACAACCTATT
TTCACCTGACTTTGGGATGGCTGCCGTCATGTCCCGTTCGACTTCTTCAG
TTTGCTCACTCTCTCCCAACAATATGAGAAAATAGACTGGTTTGAAACGG
TGACACGATCAACGTTCAGTATCATTTTGCATTTTCTCAAAGTTCACAAC
TGTGACCTCAAGCACCAACTAGTGAGTGAGCCACTGCTGCTATAATACTG
TCGTCCGACGTTGACCAGGCCTTTCGGCGACATTATCGGTCATGGGTCAT
CCCTAGGATTCGGGTGGGAGTACAGATCCAGATAGCACTCAATCTACTTT
TTGGGGCATTGGAGCTGATCTACGGTTATTCTGCGGGGACGGTGATCGCG
GTGCTGTGCTTGAGGCTCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig65:45280..46150-

>mRNA_H-paniculata_contig65.14339.1 ID=mRNA_H-paniculata_contig65.14339.1|Name=mRNA_H-paniculata_contig65.14339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig65:45280..46150- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAGGGTGGTAGCATTGAATCAGCAGCGGAGGCAGGAGGGGGGAA
CTGGAATCCGCATACGAACTCTAACGCAAACGTTGGACGACGTGGGAGTT
TGTTGAAATTCTCAACGAGGAGCAAAGCCGCGGCGGTAGTGGTCAGCAAC
TATGAGGAGGACCCGGATGCCGAGGCGGACGAATTGAGACGAGAGGGGGC
GATGAATTTTTGGACTCTCGAGTTTTACGACCCCATTTTGGAAAAGATGG
CAAAGGGTGGTAGCATTGAATCAGCAGCGGAGGCAGGAGGGGGGAACTGG
AATCCGCATACGAACTCTAACGCAAACGTTGGACGACGTGGGAGTTTGTT
GAAATTCTCAACGAGGAGCAAAGCCGCGGCGGTAGTGGTCAGCAACTATG
AGGAGGACCCGGATGCCGAGGCGGACGAATTGAGACGAGAGGGGGCGATG
AATTTTTGGACTCTCGAGTTTTACGACCCCATTTTGGAAAAGGCCTTTCG
GCGACATTATCGGTCATGGGTCATCCCTAGGATTCGGGTGGGAGTACAGA
TCCAGATAGCACTCAATCTACTTTTTGGGGCATTGGAGCTGATCTACGGT
TATTCTGCGGGGACGGTGATCGCGGTGCTGTGCTTGAGGCTCACAGCCTT
TCGGCGACATTATCGGTCATGGGTCATCCCTAGGATTCGGGTGGGAGTAC
AGATCCAGATAGCACTCAATCTACTTTTTGGGGCATTGGAGCTGATCTAC
GGTTATTCTGCGGGGACGGTGATCGCGGTGCTGTGCTTGAGGCTCACA
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