mRNA_H-paniculata_contig65.14340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65.14340.1
Unique NamemRNA_H-paniculata_contig65.14340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65.14340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65contigH-paniculata_contig65:46089..46738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65.14340.1prot_H-paniculata_contig65.14340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65 46131..46496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.8774111-UTR-H-paniculata_contig65:46088..461301622930758.8774111-UTR-H-paniculata_contig65:46088..46130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 46089..46130 +
1691481439.368916-UTR-H-paniculata_contig65:46088..461301691481439.368916-UTR-H-paniculata_contig65:46088..46130Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 46089..46130 +
1622930758.9260907-UTR-H-paniculata_contig65:46496..467381622930758.9260907-UTR-H-paniculata_contig65:46496..46738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 46497..46738 +
1691481439.3868139-UTR-H-paniculata_contig65:46496..467381691481439.3868139-UTR-H-paniculata_contig65:46496..46738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65 46497..46738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.9008346-CDS-H-paniculata_contig65:46130..464961622930758.9008346-CDS-H-paniculata_contig65:46130..46496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 46131..46496 +
1691481439.3791604-CDS-H-paniculata_contig65:46130..464961691481439.3791604-CDS-H-paniculata_contig65:46130..46496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 46131..46496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65.14340.1

>prot_H-paniculata_contig65.14340.1 ID=prot_H-paniculata_contig65.14340.1|Name=mRNA_H-paniculata_contig65.14340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MLPPFAIISPLLPGVTAPGLRWRLSSFVDDALALLVEPPCFSTFTLLRQT
AGPTEPIPSLISSSTPFEFCLLLLALWLLLRCRPLSGIWDLPLPSPFKYV
DRLLFLPPLLPTTTAPSISST*
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mRNA from alignment at H-paniculata_contig65:46089..46738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65.14340.1 ID=mRNA_H-paniculata_contig65.14340.1|Name=mRNA_H-paniculata_contig65.14340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=650bp|location=Sequence derived from alignment at H-paniculata_contig65:46089..46738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGGATTCCAGTTCCCCCCTCCTGCCTCCGCTGCTGATTCAATGCTACC
ACCCTTTGCCATTATTTCTCCGCTACTGCCAGGGGTAACTGCGCCAGGAT
TGAGATGGAGGCTATCTTCTTTTGTAGATGATGCCTTGGCGTTGCTAGTC
GAGCCTCCCTGTTTTAGCACGTTTACGCTGCTGCGCCAGACGGCCGGACC
TACCGAGCCAATCCCGTCGTTGATTAGCTCTAGTACACCCTTTGAATTTT
GCCTGCTGCTACTGGCATTGTGGTTACTGCTCCGTTGCCGACCGCTTTCG
GGCATTTGGGATTTGCCATTGCCATCACCTTTTAAATACGTCGATCGTCT
TCTTTTTCTTCCACCCCTGCTGCCGACTACCACCGCGCCGTCGATTTCAT
CCACATGAAAATCTCCTGCACCGGGATGTTTCTGATGTATGGCAGCCTCA
GAACCAAGTCCCGTTGAACTTTGTCGCCTATTTGTGTTAGGTACAGAAGA
ACGCGGCCGATTACTGGTGATAGAAATGGCAGAAGAACTTGTGTCTCCCC
GTAGCTGTGAGTTGCGGCTGTTTTCTCGACCTGAAGTGGACGAGGAATGG
AGGATATCGTTCATGTATGCACCCATCCCCGCTGACTCGATGTCCGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig65:46089..46738+

>mRNA_H-paniculata_contig65.14340.1 ID=mRNA_H-paniculata_contig65.14340.1|Name=mRNA_H-paniculata_contig65.14340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig65:46089..46738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACCACCCTTTGCCATTATTTCTCCGCTACTGCCAGGGGTAACTGC
GCCAGGATTGAGATGGAGGCTATCTTCTTTTGTAGATGATGCCTTGGCGT
TGCTAGTCGAGCCTCCCTGTTTTAGCACGTTTACGCTGCTGCGCCAGACG
GCCGGACCTACCGAGCCAATCCCGTCGTTGATTAGCTCTAGTACACCCTT
TGAATTTTGCCTGCTGCTACTGGCATTGTGGTTACTGCTCCGTTGCCGAC
CGCTTTCGGGCATTTGGGATTTGCCATTGCCATCACCTTTTAAATACGTC
GATCGTCTTCTTTTTCTTCCACCCCTGCTGCCGACTACCACCGCGCCGTC
GATTTCATCCACATGAATGCTACCACCCTTTGCCATTATTTCTCCGCTAC
TGCCAGGGGTAACTGCGCCAGGATTGAGATGGAGGCTATCTTCTTTTGTA
GATGATGCCTTGGCGTTGCTAGTCGAGCCTCCCTGTTTTAGCACGTTTAC
GCTGCTGCGCCAGACGGCCGGACCTACCGAGCCAATCCCGTCGTTGATTA
GCTCTAGTACACCCTTTGAATTTTGCCTGCTGCTACTGGCATTGTGGTTA
CTGCTCCGTTGCCGACCGCTTTCGGGCATTTGGGATTTGCCATTGCCATC
ACCTTTTAAATACGTCGATCGTCTTCTTTTTCTTCCACCCCTGCTGCCGA
CTACCACCGCGCCGTCGATTTCATCCACATGA
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