mRNA_H-paniculata_contig65.14336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65.14336.1
Unique NamemRNA_H-paniculata_contig65.14336.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65.14336.1 vs. uniprot
Match: D8LDZ6_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.270e-25
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = 2 
Query:  110 IFLFCALACVCASIYIDFFNQMPRSRKRQIMGLRVFVTVVLIGVLAATKEPRFINCIQPAGASLAAIFCATLNALLLLVPEYHMMDMNLISVITISLL 403
            IFL  A  CVCASIY+DF+   P    R  +G+RV V ++L+ VL +T++P+F+  +QP GA  A +FC +LNALLLLVPE+HMMDMN+IS++TISLL
Sbjct:  572 IFLLVAWVCVCASIYLDFYRS-PSEVTRARVGIRVSVCLLLLVVLLSTRDPKFVGWLQPVGAVTAVMFCISLNALLLLVPEFHMMDMNIISLVTISLL 668
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BLAST of mRNA_H-paniculata_contig65.14336.1 vs. uniprot
Match: A0A835Z2D8_9STRA (Adenylate and guanylate cyclase catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.560e-6
Identity = 36/112 (32.14%), Postives = 57/112 (50.89%), Query Frame = 2 
Query:   77 ITNMQRAPDGPIFLFCALACVCASIYIDFFNQ---MPRSRKRQIMGLRVFVTVVLIGVLAATKEPRFINCIQPAGASLAAIFCATLNALLLLVPEYHMMDMNLISVITISLL 403
            + N  R P     L   L   CAS+Y +FF +   +  + K+  MGLR    V+   VLAA+     +  +Q   A   A + A +N  LL VP +++  +N+I ++T+SLL
Sbjct:  697 LHNSSRRPHVQRVLLLVLVATCASMYAEFFGEGDDLSVTAKKVWMGLRFGAFVMAAVVLAASTMESLVQHMQQLTAVACAAYVALVNTDLLFVPVHYLAAVNMIIIVTMSLL 808
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65.14336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDZ6_ECTSI2.270e-2556.12Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835Z2D8_9STRA7.560e-632.14Adenylate and guanylate cyclase catalytic domain-c... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65contigH-paniculata_contig65:37105..39043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size407
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65.14336.1prot_H-paniculata_contig65.14336.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65 37107..39043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930758.7844334-CDS-H-paniculata_contig65:37106..372281622930758.7844334-CDS-H-paniculata_contig65:37106..37228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 37107..37228 -
1691481439.343686-CDS-H-paniculata_contig65:37106..372281691481439.343686-CDS-H-paniculata_contig65:37106..37228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 37107..37228 -
1622930758.8060246-CDS-H-paniculata_contig65:37582..377561622930758.8060246-CDS-H-paniculata_contig65:37582..37756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 37583..37756 -
1691481439.352822-CDS-H-paniculata_contig65:37582..377561691481439.352822-CDS-H-paniculata_contig65:37582..37756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 37583..37756 -
1622930758.8216834-CDS-H-paniculata_contig65:38934..390431622930758.8216834-CDS-H-paniculata_contig65:38934..39043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 38935..39043 -
1691481439.3607116-CDS-H-paniculata_contig65:38934..390431691481439.3607116-CDS-H-paniculata_contig65:38934..39043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 38935..39043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65.14336.1

>prot_H-paniculata_contig65.14336.1 ID=prot_H-paniculata_contig65.14336.1|Name=mRNA_H-paniculata_contig65.14336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
GEGVSAEGKLEQIRVKKLKFTLKDSNYEHAESTRRSNFPVLRTCVRVCLN
LHRFLQPDAKIQKEANYGLASVCDRSVDRCPGRDERAEVYQLHTAGGGLF
GCYFLRNAERTAAPCPGVPHDGYESHQCHHNIPSD
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mRNA from alignment at H-paniculata_contig65:37105..39043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65.14336.1 ID=mRNA_H-paniculata_contig65.14336.1|Name=mRNA_H-paniculata_contig65.14336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1939bp|location=Sequence derived from alignment at H-paniculata_contig65:37105..39043- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAGGCGTTTCAGCGGAGGGAAAACTGGAGCAAATTCGAGTGAAGAA
GCTGAAATTCACGCTCAAAGATTCGAATTACGAACATGCAGAGAGCACCA
GACGGTCCAGTGAGAGAACGAGTACTACAGATGAAGGAGGTTTAAGTTGT
GGTCCGGTCAAATTGTGATCCGGTTAAACTGTGATCCCAAAAATCTAGGG
TCAAGTGGCCTTAAACTCGACCACTAGTATTAGCCCTCTCCACCAAAAGT
GCGGATGTTCTTGTTTCTTGCAGAGCGTAAAGGTTACCAAATGGGGGCAA
TTGACACACCGAGAGAGCGCATGTACCTTTGCCGTGTTAACATCGAACTA
AAAATAGTTGCAAAACAACACCAAGAAAACGCGTGCAAGTCAATTGATGG
TCGAGTTATATTTTTGGTGCACCCCTACGCCGCTTGTAAGTTAGTGATCC
ACCACAAAAACACAGTTGTGTTGTACAGACAACACAACTAGTAATTTGGA
TAAACCGGCAGTTTGTAGGATGCTGGGCCCTGCTCTCTACACAAACTGGC
TTGCTTTACTTCAAAGGTCCTTGTTTCGATAGTGCAAGATGATGAACCGA
GCATGAATGTCGGTAGTAGCAGTGAACAGATTTTCTTTCTGTCGTTGGAG
AGTGTCATCTATTGCACCCGTATCTACGCCCGCTGTATAAAACCTGTCTT
GAATATCCAGATCGTCCAGATTTGCTCTCGAAAAGGCACCAAAGGAGAGG
CAGTGTGTTCGTCTCTTGTCGATGTCAGTGTCGGCAATGTGCCTTCCGTA
TCTTGACAATATGATAGATTATTATTCGCATATGGCGAGCAAGCGACAGG
TACACCATGTTCCAGTGGCTGACTTGTGTAAAAAAATGCTCTATCATGCC
GTGCGTGTCCCCCTGACTCGTGATGGACTCCACGTCAATCAGCAATGTTT
ATTAATTGTGCATAGGCGTGAATGTAAACCTCAAGGCGTGATTATGCCCT
TCTTTCGATAACTCGAACGTCATTCACCACCTTCTTGGTATAATCTCCAA
TATTACACTTTTCACGCAGACGAGCTGGAAGCGGAGTACCAGCACCAGTA
CAACGCCAGTCGGCTGCCACACTTCCAGGCAAGAAGAAAAATAAAGAGTG
TGGTCGCCGCAATGAAAATTGGCGATATTTCTGACTCTGAAGGCACCCTT
GTTTCATCCGTACCCCCGCACCTCCTGCCTATACCCCCGTTTCTTTCTCT
CTCTCGTTCCTTCCTGGTACTCCGCAAATTGGAGCAGATTTTCCTGTTCT
GCGCACTTGCGTGCGTGTGTGCCTCAATCTACATCGATTTCTTCAACCAG
ATGCCAAGATCCAGAAAGAGGCAAATTATGGGCTTGCGAGTGTTTGTGAC
CGTAGTGTTGATAGGTGTCCTGGCCGCGACGAAAGAGCCGAGGTTTATCA
ACTGCATACAGGTGCGGATGAAGCGTGGCACTGTGAGTGGGAAACTATAA
TGCGATAAGGGTGGGCTCGGTTGGGGTGGGGGTAGTAGGGGTACAACAAA
TCGAACAAAACAAACCTGCCTTGGTGCACAAACTGTTGATCATTCAAATC
GCAAGGCACAGTGCGTGCTGTTGTCTGAGACTATGAAACCATGTATCTCC
GGTTCAGTAGGCCAATCAAGGTGGCTAGAGAAGTACCCCGCGTTGTCGAA
GTTGCGTAGGATGCTTCGATGCCCTAGGGGGAGGCGGCTCCGCCGCGCAC
GAACCAAAATATTCAGCTAGCCGACAAGTCCCTCGCTCTGATTTACCGTC
CGTTCTTGCATGCAGCCGGCGGGGGCCTCTTTGGCTGCTATTTTCTGCGC
AACGCTGAACGCACTGCTGCTCCTTGTCCCGGAGTACCACATGATGGATA
TGAATCTCATCAGTGTCATCACAATATCCCTTCTGATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig65:37105..39043-

>mRNA_H-paniculata_contig65.14336.1 ID=mRNA_H-paniculata_contig65.14336.1|Name=mRNA_H-paniculata_contig65.14336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig65:37105..39043- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAGGCGTTTCAGCGGAGGGAAAACTGGAGCAAATTCGAGTGAAGAA
GCTGAAATTCACGCTCAAAGATTCGAATTACGAACATGCAGAGAGCACCA
GACGGTCCAGGGGAAGGCGTTTCAGCGGAGGGAAAACTGGAGCAAATTCG
AGTGAAGAAGCTGAAATTCACGCTCAAAGATTCGAATTACGAACATGCAG
AGAGCACCAGACGGTCCAATTTTCCTGTTCTGCGCACTTGCGTGCGTGTG
TGCCTCAATCTACATCGATTTCTTCAACCAGATGCCAAGATCCAGAAAGA
GGCAAATTATGGGCTTGCGAGTGTTTGTGACCGTAGTGTTGATAGGTGTC
CTGGCCGCGACGAAAGAGCCGAGGTTTATCAACTGCATACAGATTTTCCT
GTTCTGCGCACTTGCGTGCGTGTGTGCCTCAATCTACATCGATTTCTTCA
ACCAGATGCCAAGATCCAGAAAGAGGCAAATTATGGGCTTGCGAGTGTTT
GTGACCGTAGTGTTGATAGGTGTCCTGGCCGCGACGAAAGAGCCGAGGTT
TATCAACTGCATACAGCCGGCGGGGGCCTCTTTGGCTGCTATTTTCTGCG
CAACGCTGAACGCACTGCTGCTCCTTGTCCCGGAGTACCACATGATGGAT
ATGAATCTCATCAGTGTCATCACAATATCCCTTCTGATCCGGCGGGGGCC
TCTTTGGCTGCTATTTTCTGCGCAACGCTGAACGCACTGCTGCTCCTTGT
CCCGGAGTACCACATGATGGATATGAATCTCATCAGTGTCATCACAATAT
CCCTTCTGAT
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