prot_H-paniculata_contig64615.14288.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig64615.14288.1
Unique Name	prot_H-paniculata_contig64615.14288.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	91

Homology

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BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.700e-25
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 0

Query:    3 LEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI 91
            LEYASTNTPQQ G +ER GRTLAA+VRC+L DSGL  FL  +LM TA +L N  PH+A+   +P+K L+G + +L  LR IGA AFVH+
Sbjct:   83 LEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHV 171

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BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.760e-24
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI 91
            V LEYASTNTPQQ G +ER GRTLAA+VRC+L DSGL  FL   LM TA +L N  PH+A+   +P+K L+  + +L  LR IGA AFVH+
Sbjct:  354 VKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHV 444

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JRZ5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.900e-23
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ+G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:   58 IKLEYAATNTPQQTGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 147

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BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.380e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVH 282

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BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-22
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  E+M TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  147 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 236

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.200e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:   59 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 148

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.310e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282

[Close]

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0

Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 90
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6R7_9PHAE	3.700e-25	59.55	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JWF9_9PHAE	6.760e-24	58.24	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRZ5_9PHAE	7.900e-23	54.44	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRJ1_9PHAE	1.380e-22	54.44	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KF63_9PHAE	1.520e-22	53.33	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5K5H2_9PHAE	2.200e-22	54.44	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	2.310e-22	54.44	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5K500_9PHAE	2.540e-22	54.44	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	2.580e-22	54.44	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	2.580e-22	54.44	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..83 e-value: 2.0E-10 score: 42.2
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 10..91
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..91
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..82

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig64615	contig	H-paniculata_contig64615:108..380 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig64615.14288.1	mRNA_H-paniculata_contig64615.14288.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig64615 108..380 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig64615.14288.1 ID=prot_H-paniculata_contig64615.14288.1|Name=mRNA_H-paniculata_contig64615.14288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTAT
FLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf