mRNA_H-paniculata_contig64615.14288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig64615.14288.1
Unique NamemRNA_H-paniculata_contig64615.14288.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.700e-25
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    7 LEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI 273
            LEYASTNTPQQ G +ER GRTLAA+VRC+L DSGL  FL  +LM TA +L N  PH+A+   +P+K L+G + +L  LR IGA AFVH+
Sbjct:   83 LEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITPYKALYGKDANLGHLRAIGARAFVHV 171
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 6.760e-24
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI 273
            V LEYASTNTPQQ G +ER GRTLAA+VRC+L DSGL  FL   LM TA +L N  PH+A+   +P+K L+  + +L  LR IGA AFVH+
Sbjct:  354 VKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHV 444
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JRZ5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.900e-23
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ+G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:   58 IKLEYAATNTPQQTGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 147
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.380e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSRLRVIGARAFVH 282
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-22
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  E+M TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  147 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 236
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.200e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:   59 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 148
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.310e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282
[Close]
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.580e-22
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTATFLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVH 270
            + LEYA+TNTPQQ G+SER G+TLA + RC+L D      +  ELM TA +L N +PHSA+   +P+  LH   PDL  LRVIGA AFVH
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVH 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64615.14288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE3.700e-2559.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE6.760e-2458.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ5_9PHAE7.900e-2354.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.380e-2254.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE1.520e-2253.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K5H2_9PHAE2.200e-2254.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE2.310e-2254.44Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5K500_9PHAE2.540e-2254.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.580e-2254.44Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.580e-2254.44Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64615contigH-paniculata_contig64615:108..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score71.2
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog7260.FBpp0244144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:UBN2_2
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,457GT@7147,45YIF@7214,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930752.4912918-CDS-H-paniculata_contig64615:107..3801622930752.4912918-CDS-H-paniculata_contig64615:107..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64615 108..380 +
1691481436.6628964-CDS-H-paniculata_contig64615:107..3801691481436.6628964-CDS-H-paniculata_contig64615:107..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64615 108..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64615.14288.1prot_H-paniculata_contig64615.14288.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig64615 108..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig64615.14288.1

>prot_H-paniculata_contig64615.14288.1 ID=prot_H-paniculata_contig64615.14288.1|Name=mRNA_H-paniculata_contig64615.14288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
VSLEYASTNTPQQSGISERVGRTLAAIVRCMLADSGLSNFLSRELMFTAT
FLGNSAPHSAIDMQSPFKMLHGTEPDLRLLRVIGAWAFVHI
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mRNA from alignment at H-paniculata_contig64615:108..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig64615.14288.1 ID=mRNA_H-paniculata_contig64615.14288.1|Name=mRNA_H-paniculata_contig64615.14288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig64615:108..380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAAGTGGCATATC
CGAGCGCGTCGGAAGAACTCTTGCGGCTATCGTGAGGTGCATGCTTGCCG
ACAGCGGATTGTCAAACTTTCTGTCGCGAGAATTGATGTTCACGGCCACA
TTTCTGGGCAACAGCGCACCGCACTCCGCGATCGATATGCAATCCCCATT
CAAGATGCTGCACGGGACTGAACCCGACTTGAGACTTCTTCGAGTCATCG
GTGCCTGGGCCTTTGTACACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig64615:108..380+

>mRNA_H-paniculata_contig64615.14288.1 ID=mRNA_H-paniculata_contig64615.14288.1|Name=mRNA_H-paniculata_contig64615.14288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig64615:108..380+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAAGTGGCATATC
CGAGCGCGTCGGAAGAACTCTTGCGGCTATCGTGAGGTGCATGCTTGCCG
ACAGCGGATTGTCAAACTTTCTGTCGCGAGAATTGATGTTCACGGCCACA
TTTCTGGGCAACAGCGCACCGCACTCCGCGATCGATATGCAATCCCCATT
CAAGATGCTGCACGGGACTGAACCCGACTTGAGACTTCTTCGAGTCATCG
GTGCCTGGGCCTTTGTACACATCGTGTCACTCGAGTACGCCAGCACCAAC
ACGCCACAACAAAGTGGCATATCCGAGCGCGTCGGAAGAACTCTTGCGGC
TATCGTGAGGTGCATGCTTGCCGACAGCGGATTGTCAAACTTTCTGTCGC
GAGAATTGATGTTCACGGCCACATTTCTGGGCAACAGCGCACCGCACTCC
GCGATCGATATGCAATCCCCATTCAAGATGCTGCACGGGACTGAACCCGA
CTTGAGACTTCTTCGAGTCATCGGTGCCTGGGCCTTTGTACACATC
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