mRNA_H-paniculata_contig6461.14287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6461.14287.1
Unique NamemRNA_H-paniculata_contig6461.14287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: A0A7J4IJL3_9EURY (Probable pectate lyase C (Fragment) n=1 Tax=Methanoregulaceae archaeon TaxID=2485498 RepID=A0A7J4IJL3_9EURY)

HSP 1 Score: 96.3 bits (238), Expect = 4.880e-21
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   55 TPPPIPA--TALTG---IPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVTTP 288
            TPPP PA      G   +PG VEAE++D GG+G+AY D+EPANLGGA+RP EGVDI T+ G   VGW RS E+L Y+VN T P
Sbjct:  121 TPPPTPAGPRPYPGPHVVPGTVEAEDFDAGGEGIAYHDSEPANLGGAYRPAEGVDIETSGGITNVGWVRSGEWLNYTVNATAP 203          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: A0A3N5XWJ2_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5XWJ2_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.090e-19
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   55 TPPPIPATALTGIPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVTTPG 291
            TP P   TA++ +PG +EAE +D+GG GVAYSDT PANLGGA+RP E VD+  + G + VGW  + E+L YSVNV T G
Sbjct:  397 TPTPYLGTAVS-LPGTIEAENFDNGGSGVAYSDTSPANLGGAYRPTEAVDLEGSAGRYNVGWIDTGEWLLYSVNVGTAG 474          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.530e-19
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   10 SIFKKVDELETVDYPTPPP---IPATALTG----IPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVT 282
            S +   DE++  + P P P   +P  A  G    IPG +E EE+D GG+GV YSDT+  N GG FRP E VDIS    G+ VGW RS EYLRY+++VT
Sbjct:  734 STYCSHDEVDLAEPPIPTPAPVVPTGAFDGVPATIPGRIEGEEFDYGGEGVGYSDTDAGNNGGQFRPSENVDISINGDGYNVGWMRSGEYLRYTIDVT 831          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.900e-19
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   52 PTPPPIPATALTG--------IPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDI-STTVGGFYVGWTRSTEYLRYSVNVTTPGDA 297
            PTP P  A    G        IPG +EAEE+D+GGQG AY D +  N GGAFR  E VDI +TT GG YVGWTR+ E+ RY+V+V T  DA
Sbjct:  928 PTPAPTAAELQGGAYLDNPAVIPGKIEAEEFDEGGQGAAYYDVDAGNNGGAFRTTEDVDIKATTAGGHYVGWTRAGEFTRYTVDVRTAADA 1018          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: B8GHS2_METPE (Periplasmic copper-binding n=2 Tax=Methanosphaerula palustris TaxID=475088 RepID=B8GHS2_METPE)

HSP 1 Score: 89.7 bits (221), Expect = 9.840e-19
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   70 PATALTGIPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVTTP 288
            P   +  +PGLV+A +YD GG+GVAY DTEPANLGGA+RP EGVDI T      VGW R  E+L Y+VNVT P
Sbjct:   53 PYPGIHPVPGLVQARDYDLGGEGVAYHDTEPANLGGAYRPAEGVDIETAGLFTDVGWIRDGEWLDYTVNVTEP 125          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: UPI001CC6BEB2 (putative Ig domain-containing protein n=1 Tax=Ferruginibacter sp. KIS38-8 TaxID=2875540 RepID=UPI001CC6BEB2)

HSP 1 Score: 89.4 bits (220), Expect = 1.380e-18
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   40 TVDYPTPPPIPATALTGIPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTV-GGFYVGWTRSTEYLRYSVNVTTPG 291
            TV  P   P   TA   IPG +EAE+YD GG+G+AY D + AN GG +RP EGVDI T   GG+ VGWT + E++ Y+VNV T G
Sbjct: 1111 TVSNPPQAPYGGTARA-IPGKIEAEDYDTGGEGIAYHDNDVANSGGQYRPSEGVDIETCADGGYNVGWTNAGEWMEYTVNVATAG 1194          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: A0A7J4IR70_9EURY (Carbohydrate-binding protein n=1 Tax=Methanoregulaceae archaeon TaxID=2485498 RepID=A0A7J4IR70_9EURY)

HSP 1 Score: 89.0 bits (219), Expect = 1.790e-18
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   91 IPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVTTP 288
            +PG VE +++D GG+GVAY DTEPANLGG +RP EGVDI T  G   VGW RS E+L Y+V  TTP
Sbjct:   72 VPGTVEPQDFDLGGEGVAYHDTEPANLGGTYRPTEGVDIETVEGFTDVGWIRSGEWLTYTVTATTP 137          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: A0A250I799_9DELT (Endo-1,4-beta-xylanase n=5 Tax=Archangiaceae TaxID=39 RepID=A0A250I799_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 2.060e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   91 IPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTV-GGFYVGWTRSTEYLRYSVNVTTPGD 294
            IPGL++AE+YD+GGQ ++YSD  P N GGA+RP EGVD+     GGF+VGW  S+E+  Y+VNV T G+
Sbjct:  326 IPGLIQAEDYDNGGQSISYSDGSPQNEGGAYRPSEGVDVGAIPSGGFHVGWVSSSEWAEYTVNVATSGN 394          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.640e-18
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 SIFKKVDELETVDYPTPPPIPAT---ALTGIP----GLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVT 282
            S +   DE++  + P P P PA    A  GIP    G VE EE+D GG+GV YSDT+  N GG FR  E VDIS    G+ VGW  S EYLRY+++VT
Sbjct:  554 STYCSHDEVDLAEPPIPTPAPAVPTGAFEGIPATIPGRVEGEEFDYGGEGVGYSDTDAGNNGGQFRTSENVDISINGDGYNVGWMSSGEYLRYTIDVT 651          
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Match: S9QLE2_9DELT (Endo-1,4-beta-xylanase A n=3 Tax=Cystobacter TaxID=42 RepID=S9QLE2_9DELT)

HSP 1 Score: 87.4 bits (215), Expect = 5.310e-18
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   73 ATALTGIPGLVEAEEYDDGGQGVAYSDTEPANLGGAFRPDEGVDISTTV-GGFYVGWTRSTEYLRYSVNVTTPG 291
            AT L  IPG ++AE+YD+G QGVAYSD  P N GGA+RP+EGVD+     GGF VGW  S+E++ Y+VNV T G
Sbjct:  321 ATPLA-IPGQIQAEDYDNGAQGVAYSDGSPQNEGGAYRPNEGVDVGAIPSGGFNVGWVSSSEWVEYTVNVATSG 393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6461.14287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J4IJL3_9EURY4.880e-2159.04Probable pectate lyase C (Fragment) n=1 Tax=Methan... [more]
A0A3N5XWJ2_9BACT1.090e-1956.96Carbohydrate-binding protein (Fragment) n=1 Tax=Ac... [more]
D7FGU3_ECTSI1.530e-1948.98Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FTA2_ECTSI3.900e-1953.85Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
B8GHS2_METPE9.840e-1960.27Periplasmic copper-binding n=2 Tax=Methanosphaerul... [more]
UPI001CC6BEB21.380e-1852.94putative Ig domain-containing protein n=1 Tax=Ferr... [more]
A0A7J4IR70_9EURY1.790e-1862.12Carbohydrate-binding protein n=1 Tax=Methanoregula... [more]
A0A250I799_9DELT2.060e-1856.52Endo-1,4-beta-xylanase n=5 Tax=Archangiaceae TaxID... [more]
A0A6H5JFJ7_9PHAE4.640e-1848.98Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
S9QLE2_9DELT5.310e-1858.11Endo-1,4-beta-xylanase A n=3 Tax=Cystobacter TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6461contigH-paniculata_contig6461:11461..12245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D7FGU3
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930752.4361084-CDS-H-paniculata_contig6461:11460..116371622930752.4361084-CDS-H-paniculata_contig6461:11460..11637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6461 11461..11637 +
1691481436.6396868-CDS-H-paniculata_contig6461:11460..116371691481436.6396868-CDS-H-paniculata_contig6461:11460..11637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6461 11461..11637 +
1622930752.4492457-CDS-H-paniculata_contig6461:12113..122451622930752.4492457-CDS-H-paniculata_contig6461:12113..12245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6461 12114..12245 +
1691481436.6520145-CDS-H-paniculata_contig6461:12113..122451691481436.6520145-CDS-H-paniculata_contig6461:12113..12245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6461 12114..12245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6461.14287.1prot_H-paniculata_contig6461.14287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6461 11461..12245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6461.14287.1

>prot_H-paniculata_contig6461.14287.1 ID=prot_H-paniculata_contig6461.14287.1|Name=mRNA_H-paniculata_contig6461.14287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MFLSIFKKVDELETVDYPTPPPIPATALTGIPGLVEAEEYDDGGQGVAYS
DTEPANLGGAFRPDEGVDISTTVGGFYVGWTRSTEYLRYSVNVTTPGDAE
RYG
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mRNA from alignment at H-paniculata_contig6461:11461..12245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6461.14287.1 ID=mRNA_H-paniculata_contig6461.14287.1|Name=mRNA_H-paniculata_contig6461.14287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=785bp|location=Sequence derived from alignment at H-paniculata_contig6461:11461..12245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTATCGATATTCAAAAAGGTGGATGAACTCGAGACTGTTGACTA TCCGACCCCTCCGCCGATCCCTGCGACGGCTCTCACGGGCATCCCTGGAC TGGTGGAAGCGGAAGAGTATGATGACGGTGGCCAGGGCGTTGCGTACAGT GATACCGAACCGGCCAATCTGGGTGGGGTAAGTTTGACATCACTTGTCAT GTGCAGAGTACCAGACGCGACCGTACTCGCTGCACTGTTTCGTTGGCTTT GGGCTGTGATTTCTCGTCGACGTGACAGTTTTGACCAAATTCCAGCACCA TTATCTGACGAGAGCAATCTGAGTAACAAAATACATCACTGGAGGTGCTT TTATACGGTATTCGTGCTTTTTGCCGGCTGTGCACGCTCGCGTACCCTTC TTTAGCCATGGAAACCACGAAATTTTGTCCATCTATTCGTTTGCTTGCTG TCTATACATAACTCTAACGTGTTCCGTACCGTTGGCGAGATGTTGCGCTT AAATCAAGCGTCTTCGGTACTCTGAAAAAGGGTTAGCAACGCTACAATCT GGTGATGTACTTACGAAATCTAAGATGATACTTGAGTCATGCAACAGCGC TTGACCCCCAGCTAATTCTCTCATGTCCCGATTGTGTATATTTTGGAACA TAGGCTTTCAGACCGGATGAGGGCGTGGACATAAGCACGACCGTCGGTGG TTTCTACGTGGGCTGGACGAGGTCAACGGAGTACTTGCGCTACAGCGTCA ACGTCACAACCCCTGGTGACGCTGAACGATATGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6461:11461..12245+

>mRNA_H-paniculata_contig6461.14287.1 ID=mRNA_H-paniculata_contig6461.14287.1|Name=mRNA_H-paniculata_contig6461.14287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig6461:11461..12245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTATCGATATTCAAAAAGGTGGATGAACTCGAGACTGTTGACTA
TCCGACCCCTCCGCCGATCCCTGCGACGGCTCTCACGGGCATCCCTGGAC
TGGTGGAAGCGGAAGAGTATGATGACGGTGGCCAGGGCGTTGCGTACAGT
GATACCGAACCGGCCAATCTGGGTGGGATGTTTTTATCGATATTCAAAAA
GGTGGATGAACTCGAGACTGTTGACTATCCGACCCCTCCGCCGATCCCTG
CGACGGCTCTCACGGGCATCCCTGGACTGGTGGAAGCGGAAGAGTATGAT
GACGGTGGCCAGGGCGTTGCGTACAGTGATACCGAACCGGCCAATCTGGG
TGGGGCTTTCAGACCGGATGAGGGCGTGGACATAAGCACGACCGTCGGTG
GTTTCTACGTGGGCTGGACGAGGTCAACGGAGTACTTGCGCTACAGCGTC
AACGTCACAACCCCTGGTGACGCTGAACGATATGGTGCTTTCAGACCGGA
TGAGGGCGTGGACATAAGCACGACCGTCGGTGGTTTCTACGTGGGCTGGA
CGAGGTCAACGGAGTACTTGCGCTACAGCGTCAACGTCACAACCCCTGGT
GACGCTGAACGATATGGT
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