mRNA_H-paniculata_contig64569.14282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig64569.14282.1
Unique NamemRNA_H-paniculata_contig64569.14282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A6H5KI57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI57_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.670e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPE 135
            VT+EELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE+PE
Sbjct:  478 VTDEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRETPE 522
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A7S2XS96_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XS96_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.890e-18
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE 126
            VT+EELSRARNMLKCNVLT LESRLVLFEDIGRQ+LTYG+RE
Sbjct:   17 VTDEELSRARNMLKCNVLTQLESRLVLFEDIGRQILTYGKRE 58
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A7S2SHG1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SHG1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.020e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPE 135
            VT+EEL RARNMLKCNVL+ LESRLVLFEDIGRQ+LTYG+RE  +
Sbjct:  156 VTDEELDRARNMLKCNVLSQLESRLVLFEDIGRQILTYGKREGTQ 200
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A7S2KRX0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRX0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE 126
            VT+EEL RARNMLKCNVLT LESRLVLFEDIGRQ+LTYG+RE
Sbjct:  460 VTDEELDRARNMLKCNVLTQLESRLVLFEDIGRQILTYGKRE 501
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: B8BWG1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWG1_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE 126
            VT+EEL RARNMLKCNVLT LESRLVLFEDIGRQ+LTYG+RE
Sbjct:  468 VTDEELDRARNMLKCNVLTQLESRLVLFEDIGRQILTYGKRE 509
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A6U3Q142_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q142_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE 126
            VT+EEL RARNMLKCNVLT LESRLVLFEDIGRQ+LTYG+RE
Sbjct:  479 VTDEELDRARNMLKCNVLTQLESRLVLFEDIGRQILTYGKRE 520
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: K8YT24_NANGC (Peptidase_M16_C domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YT24_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 1.650e-15
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   13 ELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPE 135
            ELSRARNMLKCNVLT LESR++LFEDIGRQM+TYG RE+PE
Sbjct:  242 ELSRARNMLKCNVLTQLESRIILFEDIGRQMITYGHREAPE 282
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A7S2PHG5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHG5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.920e-15
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRE 126
            VT+EEL RA+NMLKCNVLT LESRLVLFEDIGRQ+LTYG+RE
Sbjct:  214 VTDEELDRAKNMLKCNVLTQLESRLVLFEDIGRQILTYGKRE 255
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: W7TP27_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TP27_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-15
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   13 ELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPE 135
            ELSRARNMLKCNVLT LESR++LFEDIGRQM+TYG RE+PE
Sbjct:  444 ELSRARNMLKCNVLTQLESRIILFEDIGRQMITYGHREAPE 484
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BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Match: A0A835Z8C4_9STRA (Mitochondrial processing peptidase alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8C4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.680e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   13 ELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPE 135
            ELSRA+NMLKCNVLTHLESRLVLFEDIGRQ+L+YG RE+PE
Sbjct:  450 ELSRAKNMLKCNVLTHLESRLVLFEDIGRQILSYGYRETPE 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64569.14282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI57_9PHAE6.670e-2095.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XS96_9STRA4.890e-1890.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SHG1_9STRA1.020e-1580.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2KRX0_9STRA1.440e-1588.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BWG1_THAPS1.440e-1588.10Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U3Q142_9STRA1.440e-1588.10Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K8YT24_NANGC1.650e-1585.37Peptidase_M16_C domain-containing protein n=2 Tax=... [more]
A0A7S2PHG5_9STRA1.920e-1585.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W7TP27_9STRA2.680e-1585.37Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A835Z8C4_9STRA2.680e-1587.80Mitochondrial processing peptidase alpha subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64569contigH-paniculata_contig64569:543..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D7FU77
KEGG koko:K01412
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0612@1,KOG2067@2759
EC3.4.24.64
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.711024-CDS-H-paniculata_contig64569:542..6801622930751.711024-CDS-H-paniculata_contig64569:542..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64569 543..680 +
1691481436.296043-CDS-H-paniculata_contig64569:542..6801691481436.296043-CDS-H-paniculata_contig64569:542..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig64569 543..680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64569.14282.1prot_H-paniculata_contig64569.14282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig64569 543..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig64569.14282.1

>prot_H-paniculata_contig64569.14282.1 ID=prot_H-paniculata_contig64569.14282.1|Name=mRNA_H-paniculata_contig64569.14282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
VTEEELSRARNMLKCNVLTHLESRLVLFEDIGRQMLTYGRRESPEV
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mRNA from alignment at H-paniculata_contig64569:543..680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig64569.14282.1 ID=mRNA_H-paniculata_contig64569.14282.1|Name=mRNA_H-paniculata_contig64569.14282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig64569:543..680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACCGAAGAGGAATTGAGCAGAGCTAGGAACATGCTCAAATGTAACGT
TCTTACACACCTGGAGTCCAGGCTAGTGCTCTTTGAAGACATCGGGAGGC
AGATGTTAACTTACGGGCGGAGGGAGAGCCCCGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig64569:543..680+

>mRNA_H-paniculata_contig64569.14282.1 ID=mRNA_H-paniculata_contig64569.14282.1|Name=mRNA_H-paniculata_contig64569.14282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig64569:543..680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAACCGAAGAGGAATTGAGCAGAGCTAGGAACATGCTCAAATGTAACGT
TCTTACACACCTGGAGTCCAGGCTAGTGCTCTTTGAAGACATCGGGAGGC
AGATGTTAACTTACGGGCGGAGGGAGAGCCCCGAGGTGGTAACCGAAGAG
GAATTGAGCAGAGCTAGGAACATGCTCAAATGTAACGTTCTTACACACCT
GGAGTCCAGGCTAGTGCTCTTTGAAGACATCGGGAGGCAGATGTTAACTT
ACGGGCGGAGGGAGAGCCCCGAGGTG
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