mRNA_H-paniculata_contig6456.14281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6456.14281.1
Unique NamemRNA_H-paniculata_contig6456.14281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 2.810e-109
Identity = 189/286 (66.08%), Postives = 228/286 (79.72%), Query Frame = 1 
Query:    1 VGQGTELMSMVADLQDAGLVVDEKLDMIIQHMEIQKKQTAALEMRLAEYNDHIAECLVATSACSTPVAQGVQPRHSRECGRTLRELGKMQLDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSAST-SSYFRGGTLLYMVREL 855
            VGQG EL++MV  LQ  GLVVDEKLDMII+ +  Q++  A +E+ LA+Y+  +AE L   S+  +P   G +    R  G+TLRELGK QLDKLQISKED+T+ S+RPFA GS+S+VY+V+HEGVVKAAK TNL RLG+G+KD+DRVF RFVKELYILSQMHS+RVVS+YGAIASPTELTLVME+ ERGS+R+ILDDD QR+ +  T  A+  L+LD AEGMAYLYK GV+HRDLKSANCL+THDWR KI+DFGLSKT + IST S ST S  FRGGT+ YM  EL
Sbjct:  667 VGQGAELITMVGRLQGVGLVVDEKLDMIIEQLRKQEENAAKMELSLAKYSASMAEVLGRVSSVGSPSGDGKE--RPRSNGKTLRELGKEQLDKLQISKEDVTYASKRPFASGSYSEVYQVIHEGVVKAAKKTNLARLGVGKKDIDRVFERFVKELYILSQMHSDRVVSMYGAIASPTELTLVMEFLERGSIRTILDDDRQRQSM--TPVARHGLLLDTAEGMAYLYKNGVQHRDLKSANCLVTHDWRVKISDFGLSKTIDAISTGSTSTMSGNFRGGTMTYMAPEL 948
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 2.380e-105
Identity = 185/286 (64.69%), Postives = 224/286 (78.32%), Query Frame = 1 
Query:    1 VGQGTELMSMVADLQDAGLVVDEKLDMIIQHMEIQKKQTAALEMRLAEYNDHIAECLVATSACSTPVAQGVQPRHSRECGRTLRELGKMQLDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSAST-SSYFRGGTLLYMVREL 855
            VGQG EL++MV  LQ  GLVVDEKLDMII+ +  Q++  A +E+ LA+Y+  IAE L   S+  +    G +    R  G+TLRELGK QL KLQISK+D+T+ S+RPFA GS+S+VY+V+HEGVVKAAK TNL RLG+G+KD+DRVF RFVKELYILSQMHSERVVS+YGAIASPTELTLVME+ ERGS+R+ILDDD QR+ +  T   +  L+LD AEGM YLY  GV+HRDLKSANCL+THDWR KI+DFGLSKT + IST S+ST S  FRGGT+ YM  EL
Sbjct:  731 VGQGAELITMVGRLQGVGLVVDEKLDMIIEQLRRQEESAAKMELSLAKYSASIAEVLGRVSSVGSSSGDGKE--RPRSNGKTLRELGKEQLYKLQISKDDVTYASKRPFASGSYSEVYQVIHEGVVKAAKKTNLARLGVGKKDIDRVFERFVKELYILSQMHSERVVSMYGAIASPTELTLVMEFLERGSIRTILDDDRQRQSM--TRVVRHGLLLDTAEGMTYLYNNGVQHRDLKSANCLVTHDWRVKISDFGLSKTIDAISTGSSSTMSGSFRGGTMTYMAPEL 1012
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BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A6H5KP75_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP75_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.790e-35
Identity = 74/171 (43.27%), Postives = 117/171 (68.42%), Query Frame = 1 
Query:  268 QLDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTE 780
            +L+ LQI K D+  +  RPFA G  S+VY+V H G  +AAK+ +L  LG+  ++V R++  F +EL  +  +  E V +VYGA+A+P+ELT+V +  +RG LR++L D ++RE L  T   + ++I D+A GM YLY+ G++HR+L S N L+T +W AK+ D+GL++T+E
Sbjct:  998 ELEALQIDKNDLKLVFGRPFARGKSSEVYQVTHAGKNRAAKIIDLFSLGVVGEEVTRLYEAFAQELRAMKGIRHECVAAVYGAVATPSELTIVTDLVKRGPLRTLLTDKKKREGL--TPAIRHKIIKDVASGMGYLYEQGLQHRNLHSHNVLVTKEWGAKVADYGLARTSE 1166
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A835Z605_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z605_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.650e-30
Identity = 84/203 (41.38%), Postives = 122/203 (60.10%), Query Frame = 1 
Query:  271 LDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSAST-SSYFRGGTLLYMVRELWYTNLAN 876
            L+ LQ   + +T L   P   G+ + VY+V   G   AAKV +L  +   +  + RV   F +E+YIL+++ S RVVS++G ++S  ELTLVMEY  RGSLR +L+  E   E+  T   + Q++ D+AEGM YL+  G+ HRDLKS N LI  D+RAK++DFGLS+T  TI++ S+         GTL +M  E +  + A 
Sbjct:  897 LEALQAPPQSVTRLRAAPIGRGAFASVYKVHFRGQECAAKVVSLADMTPAQ--IQRVMMNFAREVYILTRLVSPRVVSLHGCVSSVGELTLVMEYMRRGSLRKLLNSLELWAEV--TPRMRHQMLSDVAEGMQYLHYNGIYHRDLKSHNVLIGDDFRAKLSDFGLSRTASTITSFSSGRCGGXXXXGTLNWMPPECFDASAAG 1095
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A835YN29_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN29_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.560e-26
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:  424 KDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSASTSSYFRGGTLLYMVRELW 858
            + + RV+ RF +E+YILS + S R+V +Y   ++  +LTLVM+Y  RGSL  +L  +    E+  T   + +L+ D+A+GM YL+   V HRDLKS N L+T DWRA +TDFG+SKT   I+  + + S+Y  GGTL +   E++
Sbjct:    4 EQLQRVYMRFSREVYILSTLQSPRIVPLYACASTTEDLTLVMQYMRRGSLNRVLCSENAWREV--TPEMRHRLLCDVAQGMQYLHDRNVYHRDLKSHNVLLTDDWRAVLTDFGMSKTCSAITAATHAKSTY-AGGTLAWTAPEVF 145
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A836CB95_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB95_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.470e-24
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = 1 
Query:  436 RVFGRFVKELYILSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDW-RAKITDFGLSKTTETISTVSASTSSYFRGGTLLYMVRE 852
            +V+ +F KELYIL+ +   RVV V G  AS TE+T++MEY  RGSLR +L D+   ++   T   + Q++ D+A GM +L+   V H DLKS N LIT DW RAK+TDFGLS+TT+ +S+ +    S   GGT+ +M  E
Sbjct:    5 QVYIKFTKELYILATLRHPRVVEVVGCAASATEMTILMEYMMRGSLRRVLSDEHAWQQQF-TPTMRHQVLCDIAAGMLFLHDNRVHHGDLKSQNVLIT-DWGRAKLTDFGLSRTTDAVSSFTGR--STLAGGTVAWMAPE 140
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A7S4E9E9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9E9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.210e-23
Identity = 73/209 (34.93%), Postives = 114/209 (54.55%), Query Frame = 1 
Query:  244 TLRELGKMQLDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTE-LTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSASTSSYFRGGTLLYMVRELWYTN 867
            ++R+L + QL + ++  +   ++ ++PFA G   +V+   ++G     K  +L  +G+      ++   F  EL I+ ++ S RV   YG + + T  L LVMEY   GSLR  L+ D++      T   +   + D+A GMA+LY  GVEHRDLK+ N L+THD R K+TDFGLSK  +  +T +A+       GT  +M  EL   N
Sbjct:  820 SVRQLKESQLAQFEVVPD---YVEDKPFARGGEGEVFMGEYQGDSVVLKKMSL--VGMTATKRQKMLNSFKSELAIMVRLRSPRVAHFYGVVTTDTTFLGLVMEYCAGGSLRDALNTDDEI-----TSDRRRIWVSDVALGMAHLYSQGVEHRDLKALNVLLTHDLRCKVTDFGLSKCEDLKTTATATMGGAGLAGTPAFMAPELLEDN 1018
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: F0Y066_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y066_AURAN)

HSP 1 Score: 103 bits (257), Expect = 1.180e-22
Identity = 62/151 (41.06%), Postives = 90/151 (59.60%), Query Frame = 1 
Query:  334 GSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIAS-PTELTLVMEYAERGSLRSILDD----DEQREELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSK 771
            G    V+   ++G  +A  +  + +LG+   D  R+F +F +EL I+ ++ S R+V V G + + P+ L LV+EY   GSLR  LD     D +R+ + +          D+A GMAYLYK+ +EHRDLKS NCL+THD R K+ DFGLSK
Sbjct:    1 GGQGTVHLAEYQG--EAVCLKKMSQLGMSAADRQRMFSQFSRELAIMVRLRSPRIVLVLGVVTTDPSYLGLVLEYLPGGSLRDALDAEGAVDAERQRVWSA---------DVARGMAYLYKSRIEHRDLKSLNCLLTHDGRGKVCDFGLSK 140
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: A0A8J2SLU2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLU2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.960e-21
Identity = 74/210 (35.24%), Postives = 110/210 (52.38%), Query Frame = 1 
Query:  247 LRELGKMQLDKLQISKEDITFLSERPFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYILSQMHSERVVSVYGAIASPTE-LTLVMEYAERGSLRSILDDDEQR--EELMNTEGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSKTTETISTVSASTSSYFRGGTLLYMVRELWYTN 867
            +R+L   QL++ +     + ++ + PFA G   +V+   ++G     K  +L  +G+      R+   F  EL I++Q+ S RV   YG + + T  L LVMEY   GSLR+ LD +  +   +L    G      LD+A GMA+LY  GVEHRDLK+ N L+T + R K+TDFGLSK  + + T   +       GT  +M  EL   N
Sbjct:  587 VRQLKDAQLERYE---RQLDYVEDEPFAKGGEGEVFMAEYQGESVVLKKMSL--VGMTATKRQRMLNHFKSELAIMTQLRSPRVARFYGVVTTDTTFLGLVMEYCAGGSLRACLDGESGKVTADLQRVWG------LDVALGMAHLYSQGVEHRDLKALNVLLTSNLRGKVTDFGLSKCDD-LRTTQTTQGGGGAAGTSAFMAPELLEDN 784
[Close]
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Match: F0Y9T6_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9T6_AURAN)

HSP 1 Score: 97.4 bits (241), Expect = 3.210e-21
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:  439 VFGRFVKELYILSQMHSERVVSVYGAIAS-PTELTLVMEYAERGSLRSILDDDEQREELMNTEGAKEQLI--LDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSK 771
            +F +F +EL I+ ++ S R+V+V G + + PT L LV+EY   GSLR  LD D           A+ Q +   D+A GMAYLYK+ +EHRDLKS NCL+THD R K+ DFGLSK
Sbjct:    1 MFSQFSRELAIMVRLRSPRIVAVLGVVTTDPTYLGLVLEYLPGGSLRDALDAD-------GAIDAERQRVWSADVARGMAYLYKSRIEHRDLKSLNCLLTHDGRGKVCDFGLSK 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6456.14281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPT1_9PHAE2.810e-10966.08Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FKP6_ECTSI2.380e-10564.69Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KP75_9PHAE3.790e-3543.27Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z605_9STRA1.650e-3041.38Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A835YN29_9STRA8.560e-2642.76Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CB95_9STRA7.470e-2446.43Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A7S4E9E9_9STRA2.210e-2334.93Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
F0Y066_AURAN1.180e-2241.06Protein kinase domain-containing protein (Fragment... [more]
A0A8J2SLU2_9STRA1.960e-2135.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y9T6_AURAN3.210e-2149.12Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6456contigH-paniculata_contig6456:4748..12408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.3
Seed ortholog evalue5.4e-89
Seed eggNOG ortholog2880.D7FKP6
Preferred nameRCCD1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0515@1,COG5184@1,KOG0192@2759,KOG1426@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-21_001650.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size879
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6456.14281.1prot_H-paniculata_contig6456.14281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6456 4748..12387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.539087-CDS-H-paniculata_contig6456:4747..48791622930751.539087-CDS-H-paniculata_contig6456:4747..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 4748..4879 -
1691481436.2122934-CDS-H-paniculata_contig6456:4747..48791691481436.2122934-CDS-H-paniculata_contig6456:4747..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 4748..4879 -
1622930751.565475-CDS-H-paniculata_contig6456:5701..58691622930751.565475-CDS-H-paniculata_contig6456:5701..5869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 5702..5869 -
1691481436.2294717-CDS-H-paniculata_contig6456:5701..58691691481436.2294717-CDS-H-paniculata_contig6456:5701..5869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 5702..5869 -
1622930751.5819955-CDS-H-paniculata_contig6456:6306..63911622930751.5819955-CDS-H-paniculata_contig6456:6306..6391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 6307..6391 -
1691481436.2383993-CDS-H-paniculata_contig6456:6306..63911691481436.2383993-CDS-H-paniculata_contig6456:6306..6391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 6307..6391 -
1622930751.5983846-CDS-H-paniculata_contig6456:8100..82461622930751.5983846-CDS-H-paniculata_contig6456:8100..8246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 8101..8246 -
1691481436.2461512-CDS-H-paniculata_contig6456:8100..82461691481436.2461512-CDS-H-paniculata_contig6456:8100..8246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 8101..8246 -
1622930751.6157987-CDS-H-paniculata_contig6456:9753..98581622930751.6157987-CDS-H-paniculata_contig6456:9753..9858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 9754..9858 -
1691481436.255254-CDS-H-paniculata_contig6456:9753..98581691481436.255254-CDS-H-paniculata_contig6456:9753..9858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 9754..9858 -
1622930751.6284328-CDS-H-paniculata_contig6456:11713..117911622930751.6284328-CDS-H-paniculata_contig6456:11713..11791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 11714..11791 -
1691481436.2685537-CDS-H-paniculata_contig6456:11713..117911691481436.2685537-CDS-H-paniculata_contig6456:11713..11791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 11714..11791 -
1622930751.6428216-CDS-H-paniculata_contig6456:12243..123871622930751.6428216-CDS-H-paniculata_contig6456:12243..12387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 12244..12387 -
1691481436.2780282-CDS-H-paniculata_contig6456:12243..123871691481436.2780282-CDS-H-paniculata_contig6456:12243..12387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6456 12244..12387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.659074-UTR-H-paniculata_contig6456:12387..124081622930751.659074-UTR-H-paniculata_contig6456:12387..12408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6456 12388..12408 -
1691481436.2865148-UTR-H-paniculata_contig6456:12387..124081691481436.2865148-UTR-H-paniculata_contig6456:12387..12408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6456 12388..12408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6456.14281.1

>prot_H-paniculata_contig6456.14281.1 ID=prot_H-paniculata_contig6456.14281.1|Name=mRNA_H-paniculata_contig6456.14281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=286bp
MSMVADLQDAGLVVDEKLDMIIQHMEIQKKQTAALEMRLAEYNDHIAECL
VATSACSTPVAQGVQPRHSRECGRTLRELGKMQLDKLQISKEDITFLSER
PFAVGSHSQVYRVVHEGVVKAAKVTNLRRLGLGEKDVDRVFGRFVKELYI
LSQMHSERVVSVYGAIASPTELTLVMEYAERGSLRSILDDDEQREELMNT
EGAKEQLILDMAEGMAYLYKAGVEHRDLKSANCLITHDWRAKITDFGLSK
TTETISTVSASTSSYFRGGTLLYMVRELWYTNLAN*
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mRNA from alignment at H-paniculata_contig6456:4748..12408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6456.14281.1 ID=mRNA_H-paniculata_contig6456.14281.1|Name=mRNA_H-paniculata_contig6456.14281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7661bp|location=Sequence derived from alignment at H-paniculata_contig6456:4748..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGCAAGGAACCGAGCTAATGTCGATGGTGGCTGACCTGCAAGACGC
AGGCCTGGTAGTGGATGAAAAGCTGGACATGATCATCCAACACATGGAGA
TCCAGAAGAAGCAGACGGCCGCCCTCGAGATGCGCCTGGCCGAATACAAT
GATCATATAGCGGAGGTCAGCACTGTACTGCTCGCATGTACGAAGAAAAC
GACTAAAAAGCCCATGCAGCAATAGCGAAAAAAAAGCGGAAGATAAGTCA
TATATCTACCTCCTCTGTGCCAAAAGCATAGTCGATTAGATTCGTTGAAG
ACTAGTGATCTGAGATTTTATGTATACATTTTGTTGTTGTTAGAATCCTA
CACGTTTTTAGGGTCAAACCCCAAAAATTGGAGGAAATCCGTCAAGTCCA
CTAGGTGCACGCCCCGTGCAAACATAAAAAACAATGGTGTAAAATCAGCT
GCATTTTGATGATTACTATTTCATCTCGCTGAAAAGTAAAGGCAGTTTAA
CCTACCTAACCCCAGTCCTCCTCGCCGTCGCTGCCGCTAGGAACGCGCAT
GACTTGCGAAAGGCGTCCTGGCCATACCCGACCTTCCTCTATGCCCCTCT
CCAACGTTCGCGCCCAGTGCCTAGTAGCAACCTCGGCGTGCTCTACGCCC
GTGGCACAAGGAGTTCAACCCCGACACTCTAGAGAGTGTGGCAGAGTAAT
TTAATGCTCTTAAACTAAACGCCAAGTAAGGTTGGTGACAATGATTTCGG
CGTAGAGTATACCGAGGTTGCTACTAGGCAGAGGGTATGGGTATTGAAAA
GGGGCTACAGTATGACCAGGACGCCTTTCACAAGGCCTTCGCATTCCTGG
CAAACCGCAGCAGCGACGGCGAGGAGGGCTAGGTTAGATGGGCTTCATCG
CCTTAGCTATTTTGCGATTGGCCAACCAAAAATGTCGAAATATAGCTGAT
TTTACACCCCTGTTTCTGCGCAGAGCGTTCACCCGATGGACTTGATGTAA
TTCTTCCAAAACTTGAGGTTCAACCTCCGACATGCTTAGGATTATAATGT
TTGAAATAAACAAATCGGAACTCATCATTGTCTTCTATATAAATAATCGA
CCACTGTTATGGCACAACGAAAGTACAGCTCTACATTCCTTATCCTTCAC
AGCACTTCATTGCATTTTTTTTGTCTTGATGACAACGTGTCTGCCGCAGC
ATCTGCTGTGCGCGGTATCATGGCGAGCCAAAAGGTAGGACAAGGTAGGA
CAGTTTTGACTCTTTCTGATGCACCCAAAAATTACCATTTTGTCGATTCT
CCAGCGAGTTGATGCCACCTGGTGAAGTTATAAACAATCGATGGACGCAG
TGCATTTGTATGTGCGTTTCATGTAGGCAATAGGGTTGCTTATGCGAAAC
TCGAACGATTATATTCGTCTCGTCTCGGGTCTTGACCCAAACTCGACTGA
TTCTTAACCCTGGGTTCACGGTGATACGTAACGTTGCCCAATACCACTGT
GATGCCTATACTCCCTGCACACAATGTACTCATTGTGTTGACAATTGATA
CAGATTTGCCAATGTCATTCTGACCCCTCAAGCGCAATTTTTGGACTAGC
CCGAGACCTTTCATATGTTACTGTTCACTCTCTCTCACAGCCACGAACAG
CCCGGATCGCTCAACCATTTCTGTCAATTTTCTCAATTTACTCAAGTAAG
GACAACTAGATAGCCGTCACCACTGGTACGGTGTAAGAGATCGGGTAATC
ATTCTGCTCAAGAGACCAGGTTTGCTTACTTGCAGCTTTGACACACCTCG
ACACTTTCCGGCGCCGCACACACTATCCTTCATACCCGATGATGTTCTCT
GCTGATCGTGATCCTGACTAGACTAGTACACTACGTTAGTTCACCTTCTA
ACCTCGACCCACAGTAACTGATAACTGAGTTGATTTTCCCCATGCAAATC
TTTGCTTGCTATGTTTTCGTGTGTTAAATGTTTTGTGTTATTTTCTTGCA
CGAACAGGCTCTAGGGCAGTTCATGGTGACGAAAGATGCGAAGGCGCTAC
CTCCGACAGGGTCCACTGCAAAGGCAAATTAAGCATCGAGGGCCCGTTCT
AATAACTCAACAACACGTAAAACTAGCCTGAAGCAGGGAGATTGGTTGCT
TGATCGTCAAAGCGAAGGGACTTCGTGCAGTTGCATTTCCCTTCCCATTA
ATCAGCCATGTGTGCGTGCTTTTCACATTGGATTGTGAATGTATACGGTT
GCTCGTTGAATACATATGACAAAACGTATCGCAGTCTGAGTGTTGAACAC
GAATACTTCGAACGAACGGTTTCGATTAAACATACACCATTGCTCCGGGC
AATAGTGAAACGAGTAAACGGTGACCAATACTTTGTTGTACGTACCATCA
TCAATTCCGCACATGCTGAAATTCAGATAAATACTTGATAACTTTCGTCT
AAACCGTTCAGAGTATCCATATTCGTCCACAACGAATTATTGAAATTTTG
AGGATCCTTTTTTGTTGTTTCGTCTATTTTGTTCGGCACTGATGCTCCAG
ACATTGCGGGAGCTAGGGAAAATGCAGCTGGACAAGCTGCAGATCTCGAA
GGAGGACATCACATTCCTGAGCGAGAGGCCTTTCGCCGTGGGCTCGCATT
CGCAGGTTGCGTTGAAACTGGGTTTGGCGTCGTACGTGTCTTCGAAAATG
TATCTATTTTCGAAGTTGCACCTATTTTCGAGGCTTTATCTGCTTTTGAC
GTTATGCCTGTGATTGACGACATACATGCCGTAGCACTCTTCCTCTTCAT
ATCGTCGTGTCCGCTTTATTTTTGCTGGAGAAGGAGAGCTGGTAGTGTTG
GTGTAATGGCTGAAACATGGCACTGGAACAACGCAGTAGCTGGTCGCAAG
AAGAACCATAACGTTCGTTCCTGAAACTTGTGCGAGTTTTGACGAGTTAA
AAGATGACGCATTTCACGATGTCAGATGTTCAGATGTTCAGATGTTCAAA
TGTTGTAAATGTCACAGTGGAACCTACACCGTTCCTCACCTTGTACTCAT
AATTCGTCCTGAGTAACGCCGGCCGAATATGGCAACCGTTACGCACGGCA
CAAGCTTTGCTCCGTATCTACTCCAGAGTGATTAAGGTTCCTGTATTCGC
TGATATGACTCGTTCATATAAAGAAGTATCCGAATTATTTCGACCTCTTT
TCTCTCTTTCTCTCAAAAAGCTACTGCGAAAAAAATCACTAACCCACAGC
TAGAGTCGATTGTGGTTGTCGAGAAATCTGGCGATTTATATTTTGAACAT
GGATAATTCTCCATAGTCCGTTTTAGCCTAATTACTCGACGATCACGACC
GATCTCAACGAGGAGAAACAGTGAAGGTTTTCCGCACCGAAGTTCAAACG
CCTGTACAACTATTTAGCTCCTCACCGTTAGAATTCAGCGCTCGAAATCG
AAAATCGCTCTGGATAGATTCAATTTGAAAAGAGCGCGAACTTGTGTTCG
CTTAGGTCCACTGTTTCCCTTTTCTGAAATGTTTATGGTACGAAATGTAC
GATGTGGCGAACAGCTCGTGGCGGTTGTGTGTATGCTATGTTTCGATTTG
CTGACTGCGGTTAGCTTGTTCACAGCAAAATAGTTGCTGTGATGTGAGAA
TTTTGCAATAATTCACAGAGTTGCCGGCGTTACCGGTCCATCTAATAACG
TAGCTAGTACCAGCAGTCGAACATTGATTCCCTGCAGAGTGACTTTTCGA
GAATGAAATATACCCATCCCTTGTCTTAAGCTGTTGCTTGTCATGAAACA
AAATGCAATTGCTGTCAATGTAGGAGTAGAAGATTCGACAGAAACTGCCA
AATAGTCGAAACAAGCTGCGGTTATATTCCACTCTAGCAATACACATGCG
AAAATATCTTCAGATTCTACAGGGTGTTGTGTTATTGTTAATAGGTGCTT
TTGGTTTGCCCACGACTACATCACGAAAGCTCTCGAATATTGAGCGCGTT
ATACAACCCTCCCGAGAAAGTTTGATAAGTTTTTGTCACCCATATCACGA
AAACACGGATAATATATGAAAACCAGGTTCCAAAACTGACATCACACGAG
ACCTCACCCTCACCTAGTTGATGTATCTTGAATTTGAATGCACACATGAT
GGCATACAACAGGTGTATCGAGTCGTACACGAAGGCGTCGTTAAAGCGGC
GAAGGTAACTAACTTGCGGCGATTAGGTTTGGGTGAAAAAGACGTCGATC
GGGTGTTCGGGCGCTTCGTCAAGGAGCTCTATATTCTCAGCCAGATGCAC
AGCGAGAGGTGTGATTTACTTTAATAGTATGTACTCTTTACTATTGTTCT
TGTCATGATAGTTCTTTTGACACAAAGACAAGAGGACAAGAGGATCGTCA
TGGCGGGACGTGCGACTGATGTTATGACGCAGGTGTGTTTTTGACTCTTT
TTGAGGAATGGCGTATTTCTCGAAGTACGGTTGATTTTTAATGCTGCAGG
TATGTTTTTGGCTCTCTACAGAGAAATGGAATGCAGTTGAAAGTACTTTG
TTGATTCACCGCAAACCGTAATTTGACAAATACATATTTTGGACCATGAC
CCCACGTTTTTCGACCTTTCTTGCCGGAATACGCTTATGCAGCATAAAGT
TCAAGTTGCACGCTTCTAGCGATGAATAAATTTCACCCCAAGTGTGAGTC
AGTCTAAAAAGAGGACTAAATCTCATGTCTGGTCACAACAAAATCGATTG
GGAACGCCAAAATGGAACGTTGGAAATACACAGCATGCTTCGCAAAGAAT
GTGTCAATCGACAATATTTAGCCGTTTGCTGCAGGTTTCACGACCAGACC
TTGTCCCAATCTTGCTAATTTTGTCCGCATTTATACATGCCGCATGGCAT
CTCCAACATGCGATCAGTAGTACAAGCACTCGGGATTGGTATCGCAATAA
CCATGATGATGTCGCTCTAGCCCAGATCACCTTAGTAGAAGACCAATATC
CTTTCTGGCGACGTTTGTTTCGAGCTGACCTGCAACTCATTTGATTCGCG
TTACCAACAGCGAAAGATTGCACACGGCTCTTGGTGTTTTTTTTTGTTGA
GGTTGCCAAATCGACGTTGTGCAGTTTTGCACATTATACCAAGCAGCACG
CCATTGTCGACAGCCACGATGATACGTCTTGGCCAAGACCGCTGGGACAG
TCTCGTCCCTAGCAACGATAGTACCCCGTTAATTTGCCGTACACTCAAAT
CACTGGGGATGTATGTTGTATCATCGCTGTACTTACCGCCTGTTTTTTCC
GGACTGTAAGCATCACGGAGCAAGGTTCCACTCGGCAACCACGTCGAGGC
GAGGCTGAAGCCAGATTTACTCGGACGGTCTTGCCACTAGCAACGACTCG
TTTTCTACGATCTACTATTCGCTCGTGCTCCGTAAGAGTGTGCTATGAGC
TGCTTCCAAATTTTGAGGCAATTTGTTTCGAGATTCGTACCGAGCTGCAA
CAAAGAAATGATGCAAGCCTAATGACAATGAGTAGAGCCGCGTCGTCATC
TCTGTTTGGCTGGTATTGTTTGAGTGGAAACATTGTTCAATATTGAGCAC
GTTCACACGTCCAAAATCTCTTTAGTTTGGACAATGATATCACATATCGT
GCCCTAAATCATTTCGGTCGATCACATCAAACGATTGACCAGCAGTTGGC
AATCGATACCCGGCGTGGAGAGCCAGTCTAATGACCTAATCTAAAGCGGT
CGAAGGCTCAGCAAAGCGTCCCTATTGCCTGTTCTCTATAACGATAAGAG
GGTAATTAAACTACGCTGCCAATGCGGCAAATGTTTTCCAAGTTAGGTGT
TCGATGTTGCACAGAAACGACTCACATGTATATGGAAGTTTTAGCTAGTG
TACGCTTGTCAGTGTTTTACTCATTGTACTTGTTTACATCCTCTTCGCTT
TCGTCCTTTGTGTCTCTCTCGCTATCTCGTTCTCTTGATTTCTCGGTCGT
GGTTTTCTGATGATCAGGGTAGTGTCCGTGTATGGAGCGATTGCTTCTCC
TACCGAGCTGACGCTAGTCATGGAATACGCCGAGAGGGGGAGCCTCAGAT
CGGTGCGAGCACCATACATACCTGTTTCAATGGTCACGATTAGCCTGTTC
CATCCATTTTTGGGGGTGCTTTCGCACGTCACGTAGGATTGCCTATTAGC
TTTGGTCATGAGGCTCGCGCGACCCATGTGACAGAGTTCGTATAGTGTAA
AAAACAGCATACAGTTGTCGACATGTCATGGGTAGATGATACGTGCTACC
GATACAATGATTTTTTCCCCTTTGACACTAACGTGTACGGTTCAACGTTT
TGGGGGTGCGGTGACTCTATCTTGCAAGGTATTGCCATGCCCTCTCCCGG
TGCATCCTCTGGCAAACAAGCCATCCTCGTAGAGACCGGTGCAATAGCCC
TTATCCCCTCGCGCCCTTGTCAACTCGGTGTGCAAACGACTGCCCTGTCA
CATCCGACCCTCGTCGCGTTTTTTGTGATTGTGTGTTAGATTTTGGACGA
CGATGAGCAGAGAGAGGAATTAATGAATACCGAAGGAGCGAAGGAACAAC
TTATCCTGGACATGGCGGAGGGCATGGCGTACCTGTACAAGGCAGGGGTA
GAACATCGAGACCTTAAGAGTGCCAACTGCCTCATCACACACGACTGGAG
AGCGAAGGTGACTTACCAAGAATCGGTAGGTCAATGAGGATTGAACTGTT
GTATGCGGATATCACGGGCAGTGAGGGGCAGGGGCAGCGGTACCCAGGCA
AGGGGGCTAGGGGTATGCGAGGGGAATTGATATCTTCAACATAATGCCGA
CCTTGCACCTCCTGTCCGTCTAAATATATCCACTCTGACCAAGTTGTCCG
AATTTGTTGTTGTGCGAGGTTGGGTACATTCAGGGTACTAGTAACTCTCC
AGCAAGGCGAATATCCAACTCTTTGCATTGGTTCGAAATCAGTCCGTACC
ACGAGGCCTGTGAGGCGGGGGGGGACACGAGTGTTCACATGGAAACGAAT
GCCATAGTCTCTCGACCATTGACCTTGCATGCCTACGATGCCGCGGCGCA
CGCCGAATATTCGCTGGGCAGGCCACGTTTCACAAGGGTGATTGATACTA
GTTACTAGTCATCATTCTTGCGTTGCCACCCCAATTAGACTCTGCCGTGG
GGTTTTGGGCATCCCGTGGATCGAGATGTTGCACATTCAGCAAGCGTAAC
TATACCTCAAGAGTCAACCTCAACGAAGAGCTGGGGCGGGGGCAGGGAAA
TTGCAGAGAACAGCGTGAATTCGTCAATCATGTGTTGTGTTACTGGTTTG
GTTGCTCAAACTTTCCCCAAGCAAGACCTATATTTTCGTCGTACCCCTCT
GCCTTCGCACGTTCTTTAGCTATCCTTGAGTGTGTCACGCTCTCTTTATT
TTACCCTTGTTTCCCCCGTTTTGTTTTTTTGCTGCCATTGGATGTTGTCC
CTGTTATCATTTCCTCCCTCATGATGCAGATAACGGACTTTGGGCTGTCG
AAGACCACGGAGACCATATCAACTGTCTCTGCCAGCACCTCTTCCTACTT
CCGGGGAGGTACCCTATTGTACATGGTGAGGGAGCTATGGTACACTAATC
TTGCAAATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6456:4748..12408-

>mRNA_H-paniculata_contig6456.14281.1 ID=mRNA_H-paniculata_contig6456.14281.1|Name=mRNA_H-paniculata_contig6456.14281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at H-paniculata_contig6456:4748..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATGGTGGCTGACCTGCAAGACGCAGGCCTGGTAGTGGATGAAAA
GCTGGACATGATCATCCAACACATGGAGATCCAGAAGAAGCAGACGGCCG
CCCTCGAGATGCGCCTGGCCGAATACAATGATCATATAGCGGAGATGTCG
ATGGTGGCTGACCTGCAAGACGCAGGCCTGGTAGTGGATGAAAAGCTGGA
CATGATCATCCAACACATGGAGATCCAGAAGAAGCAGACGGCCGCCCTCG
AGATGCGCCTGGCCGAATACAATGATCATATAGCGGAGTGCCTAGTAGCA
ACCTCGGCGTGCTCTACGCCCGTGGCACAAGGAGTTCAACCCCGACACTC
TAGAGAGTGTGGCAGATGCCTAGTAGCAACCTCGGCGTGCTCTACGCCCG
TGGCACAAGGAGTTCAACCCCGACACTCTAGAGAGTGTGGCAGAACATTG
CGGGAGCTAGGGAAAATGCAGCTGGACAAGCTGCAGATCTCGAAGGAGGA
CATCACATTCCTGAGCGAGAGGCCTTTCGCCGTGGGCTCGCATTCGCAGA
CATTGCGGGAGCTAGGGAAAATGCAGCTGGACAAGCTGCAGATCTCGAAG
GAGGACATCACATTCCTGAGCGAGAGGCCTTTCGCCGTGGGCTCGCATTC
GCAGGTGTATCGAGTCGTACACGAAGGCGTCGTTAAAGCGGCGAAGGTAA
CTAACTTGCGGCGATTAGGTTTGGGTGAAAAAGACGTCGATCGGGTGTTC
GGGCGCTTCGTCAAGGAGCTCTATATTCTCAGCCAGATGCACAGCGAGAG
GTGTATCGAGTCGTACACGAAGGCGTCGTTAAAGCGGCGAAGGTAACTAA
CTTGCGGCGATTAGGTTTGGGTGAAAAAGACGTCGATCGGGTGTTCGGGC
GCTTCGTCAAGGAGCTCTATATTCTCAGCCAGATGCACAGCGAGAGGGTA
GTGTCCGTGTATGGAGCGATTGCTTCTCCTACCGAGCTGACGCTAGTCAT
GGAATACGCCGAGAGGGGGAGCCTCAGATCGGGTAGTGTCCGTGTATGGA
GCGATTGCTTCTCCTACCGAGCTGACGCTAGTCATGGAATACGCCGAGAG
GGGGAGCCTCAGATCGATTTTGGACGACGATGAGCAGAGAGAGGAATTAA
TGAATACCGAAGGAGCGAAGGAACAACTTATCCTGGACATGGCGGAGGGC
ATGGCGTACCTGTACAAGGCAGGGGTAGAACATCGAGACCTTAAGAGTGC
CAACTGCCTCATCACACACGACTGGAGAGCGAAGATTTTGGACGACGATG
AGCAGAGAGAGGAATTAATGAATACCGAAGGAGCGAAGGAACAACTTATC
CTGGACATGGCGGAGGGCATGGCGTACCTGTACAAGGCAGGGGTAGAACA
TCGAGACCTTAAGAGTGCCAACTGCCTCATCACACACGACTGGAGAGCGA
AGATAACGGACTTTGGGCTGTCGAAGACCACGGAGACCATATCAACTGTC
TCTGCCAGCACCTCTTCCTACTTCCGGGGAGGTACCCTATTGTACATGGT
GAGGGAGCTATGGTACACTAATCTTGCAAATTGAATAACGGACTTTGGGC
TGTCGAAGACCACGGAGACCATATCAACTGTCTCTGCCAGCACCTCTTCC
TACTTCCGGGGAGGTACCCTATTGTACATGGTGAGGGAGCTATGGTACAC
TAATCTTGCAAATTGA
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