mRNA_H-paniculata_contig6391.14198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6391.14198.1
Unique NamemRNA_H-paniculata_contig6391.14198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6391.14198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6391contigH-paniculata_contig6391:2801..3245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6391.14198.1prot_H-paniculata_contig6391.14198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6391 2930..3238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930739.6653125-UTR-H-paniculata_contig6391:2800..29291622930739.6653125-UTR-H-paniculata_contig6391:2800..2929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6391 2801..2929 +
1691481430.807241-UTR-H-paniculata_contig6391:2800..29291691481430.807241-UTR-H-paniculata_contig6391:2800..2929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6391 2801..2929 +
1622930739.6999848-UTR-H-paniculata_contig6391:3238..32451622930739.6999848-UTR-H-paniculata_contig6391:3238..3245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6391 3239..3245 +
1691481430.8307178-UTR-H-paniculata_contig6391:3238..32451691481430.8307178-UTR-H-paniculata_contig6391:3238..3245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6391 3239..3245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930739.6843326-CDS-H-paniculata_contig6391:2929..32381622930739.6843326-CDS-H-paniculata_contig6391:2929..3238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6391 2930..3238 +
1691481430.819558-CDS-H-paniculata_contig6391:2929..32381691481430.819558-CDS-H-paniculata_contig6391:2929..3238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6391 2930..3238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6391.14198.1

>prot_H-paniculata_contig6391.14198.1 ID=prot_H-paniculata_contig6391.14198.1|Name=mRNA_H-paniculata_contig6391.14198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MEISRNVSFESSSDSRPLHSPPVACALPVLIVHFALQSVGVTPGRTPLKR
LPRFNSQRANSTALHYYTKLHYTTNTCLLQSFQTSLFPQPQHPRSIAPLR
LT*
back to top

mRNA from alignment at H-paniculata_contig6391:2801..3245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6391.14198.1 ID=mRNA_H-paniculata_contig6391.14198.1|Name=mRNA_H-paniculata_contig6391.14198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=445bp|location=Sequence derived from alignment at H-paniculata_contig6391:2801..3245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTGTTATCAAGCCTCCTTTGTACTCCTCGGCCACATTGCCAGTCTAGC
TTTCTACGATCCAATGTTCACACCTGCCCGAGTGTGGACCTGAGGTGCTC
CAAAATATATCCTATTTCGAGAAACTTCTATGGAAATATCGAGAAACGTT
TCGTTTGAATCCTCGTCAGACTCAAGGCCATTACATTCTCCACCTGTCGC
GTGCGCGTTACCTGTCTTGATTGTACATTTTGCGTTGCAGAGCGTAGGCG
TAACCCCGGGTCGAACCCCCCTAAAAAGATTACCTCGTTTCAACTCACAA
AGAGCAAATTCCACTGCACTACATTACTACACTAAATTACACTACACTAC
AAACACATGCCTTTTGCAATCGTTTCAAACCTCTTTGTTCCCCCAACCTC
AACACCCTCGATCAATAGCTCCTCTCAGACTTACCTGAACGAAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6391:2801..3245+

>mRNA_H-paniculata_contig6391.14198.1 ID=mRNA_H-paniculata_contig6391.14198.1|Name=mRNA_H-paniculata_contig6391.14198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig6391:2801..3245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAATATCGAGAAACGTTTCGTTTGAATCCTCGTCAGACTCAAGGCC
ATTACATTCTCCACCTGTCGCGTGCGCGTTACCTGTCTTGATTGTACATT
TTGCGTTGCAGAGCGTAGGCGTAACCCCGGGTCGAACCCCCCTAAAAAGA
TTACCTCGTTTCAACTCACAAAGAGCAAATTCCACTGCACTACATTACTA
CACTAAATTACACTACACTACAAACACATGCCTTTTGCAATCGTTTCAAA
CCTCTTTGTTCCCCCAACCTCAACACCCTCGATCAATAGCTCCTCTCAGA
CTTACCTGAATGGAAATATCGAGAAACGTTTCGTTTGAATCCTCGTCAGA
CTCAAGGCCATTACATTCTCCACCTGTCGCGTGCGCGTTACCTGTCTTGA
TTGTACATTTTGCGTTGCAGAGCGTAGGCGTAACCCCGGGTCGAACCCCC
CTAAAAAGATTACCTCGTTTCAACTCACAAAGAGCAAATTCCACTGCACT
ACATTACTACACTAAATTACACTACACTACAAACACATGCCTTTTGCAAT
CGTTTCAAACCTCTTTGTTCCCCCAACCTCAACACCCTCGATCAATAGCT
CCTCTCAGACTTACCTGA
back to top