prot_H-paniculata_contig6364.14167.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6364.14167.1
Unique Nameprot_H-paniculata_contig6364.14167.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
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BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-10
Identity = 55/130 (42.31%), Postives = 64/130 (49.23%), Query Frame = 0 
Query:   19 GGGGRGPAPRTPLQLRTPRQAVAAALGESPMNI--SPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIPADVSVPVPEEVPAKKKRRWEVSVPXXXXXXXXXXXXXXXDRRSAGEEEYDSHG 146
            GGGGRG  P+TP QLRTPRQAVAAALG SPM+   SPV +R M +    N K S   K    G           G+ AD+ +  P      KKRRW VSVP                   +GEEE+D  G
Sbjct:  691 GGGGRGSRPKTPAQLRTPRQAVAAALGNSPMDTDTSPVPIRNMLSDRTPNGKSSGPSKGRGEGA----------GV-ADIELASPVNPHPAKKRRWAVSVPLPAEGEDG----------DSGEEEFDGGG 799
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BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.410e-9
Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 0 
Query:   19 GGGGRGPAPRTPLQLRTPRQAVAAALGESPMNI--SPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIP-ADVSVPVPEEVPAKKKRRWEVSVPXXXXXXXXXXXXXXXDRRSAGEEEYDSHG 146
            GGGGRG  P+TP+QLRTPRQAVAAALG SPM+   SPV +R M +    N   S         + RSE      G+  AD+ +  P      KKRRW VSVP                   +GEEE+D  G
Sbjct: 1545 GGGGRGSRPKTPVQLRTPRQAVAAALGNSPMDTDTSPVPIRNMLSDRTANDGSSGP------SRGRSE------GVGGADIELASPVNPHPAKKRRWAVSVPLPTEGEDG----------DSGEEEFDGGG 1653
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKF8_9PHAE2.630e-1042.31Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP86_ECTSI4.410e-941.98Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6364contigH-paniculata_contig6364:5841..7865 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6364.14167.1mRNA_H-paniculata_contig6364.14167.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6364 5841..7866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6364.14167.1 ID=prot_H-paniculata_contig6364.14167.1|Name=mRNA_H-paniculata_contig6364.14167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
SGIKLKRGFNSPSLARGIGGGGRGPAPRTPLQLRTPRQAVAAALGESPMN
ISPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIPADVSVPV
PEEVPAKKKRRWEVSVPPPTEESGSGLDDDDKDRRSAGEEEYDSHGEGGV
EDRGGKENDPRGRNASEEVLVERK
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