mRNA_H-paniculata_contig6364.14167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6364.14167.1
Unique NamemRNA_H-paniculata_contig6364.14167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.630e-10
Identity = 55/130 (42.31%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:   55 GGGGRGPAPRTPLQLRTPRQAVAAALGESPMNI--SPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIPADVSVPVPEEVPAKKKRRWEVSVPXXXXXXXXXXXXXXXDRRSAGEEEYDSHG 438
            GGGGRG  P+TP QLRTPRQAVAAALG SPM+   SPV +R M +    N K S   K    G           G+ AD+ +  P      KKRRW VSVP                   +GEEE+D  G
Sbjct:  691 GGGGRGSRPKTPAQLRTPRQAVAAALGNSPMDTDTSPVPIRNMLSDRTPNGKSSGPSKGRGEGA----------GV-ADIELASPVNPHPAKKRRWAVSVPLPAEGEDG----------DSGEEEFDGGG 799
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BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.410e-9
Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:   55 GGGGRGPAPRTPLQLRTPRQAVAAALGESPMNI--SPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIP-ADVSVPVPEEVPAKKKRRWEVSVPXXXXXXXXXXXXXXXDRRSAGEEEYDSHG 438
            GGGGRG  P+TP+QLRTPRQAVAAALG SPM+   SPV +R M +    N   S         + RSE      G+  AD+ +  P      KKRRW VSVP                   +GEEE+D  G
Sbjct: 1545 GGGGRGSRPKTPVQLRTPRQAVAAALGNSPMDTDTSPVPIRNMLSDRTANDGSSGP------SRGRSE------GVGGADIELASPVNPHPAKKRRWAVSVPLPTEGEDG----------DSGEEEFDGGG 1653
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6364.14167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKF8_9PHAE2.630e-1042.31Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP86_ECTSI4.410e-941.98Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6364contigH-paniculata_contig6364:5841..7866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D7FP86
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6364.14167.1prot_H-paniculata_contig6364.14167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6364 5841..7865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930735.7373276-CDS-H-paniculata_contig6364:5840..59241622930735.7373276-CDS-H-paniculata_contig6364:5840..5924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 5841..5924 +
1691481428.9310815-CDS-H-paniculata_contig6364:5840..59241691481428.9310815-CDS-H-paniculata_contig6364:5840..5924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 5841..5924 +
1622930735.7572086-CDS-H-paniculata_contig6364:6581..66861622930735.7572086-CDS-H-paniculata_contig6364:6581..6686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 6582..6686 +
1691481428.943588-CDS-H-paniculata_contig6364:6581..66861691481428.943588-CDS-H-paniculata_contig6364:6581..6686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 6582..6686 +
1622930735.769289-CDS-H-paniculata_contig6364:7532..78651622930735.769289-CDS-H-paniculata_contig6364:7532..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 7533..7865 +
1691481428.9536817-CDS-H-paniculata_contig6364:7532..78651691481428.9536817-CDS-H-paniculata_contig6364:7532..7865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6364 7533..7865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6364.14167.1

>prot_H-paniculata_contig6364.14167.1 ID=prot_H-paniculata_contig6364.14167.1|Name=mRNA_H-paniculata_contig6364.14167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
SGIKLKRGFNSPSLARGIGGGGRGPAPRTPLQLRTPRQAVAAALGESPMN
ISPVKMRGMSAAELDNKKCSSIEKLDDNGKVRSETSLDDDGIPADVSVPV
PEEVPAKKKRRWEVSVPPPTEESGSGLDDDDKDRRSAGEEEYDSHGEGGV
EDRGGKENDPRGRNASEEVLVERK
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mRNA from alignment at H-paniculata_contig6364:5841..7866+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6364.14167.1 ID=mRNA_H-paniculata_contig6364.14167.1|Name=mRNA_H-paniculata_contig6364.14167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2026bp|location=Sequence derived from alignment at H-paniculata_contig6364:5841..7866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGAATCAAGCTGAAGAGAGGCTTTAACAGTCCTTCCCTAGCAAGAGG
GATTGGGGGCGGTGGGCGCGGGCCTGCGCCTAGGGTGAGTGAGTTAGGAC
GCTGATGAGGGGTTGCCTCGATAATAATTCCATAACTAGAAAGGAAAAGT
TGATTTTGTCACGTTGCGATATGAAAACAATCTTGAATGTTCGGTCTGAA
ATTGGGCTTATTGTAAAACTGCTGTGTCGGTTATTCGTTCTATGTAAGCG
ATATGCCCATCTGTGCCTTTTACAGGGCATCTGTACCTTGTATAGTGTTT
TATGCTTATCATGCGTTCGTTTGTTTGCCTCTGGATCCCCCCCCCTGTAT
CGTTGTTTGTGTGTAACTGTAAAACAAGAACGTAACACGCTTCTTTTGTA
TAAATGTATGAGCGGGTTTTTGTACTATGCTAGACTGGATAATAAGACAG
AGGTGTAGGCGTCGTCTGGTTGATGTGTTTTTGAAGGAATTTCATGATGT
GTCCATTCTGGAATAGATGCTCTTAGACAATTGTTGCTCTAGTTTGCGTT
CACTCAGCGCTTTCCTGACCAACAGCCATGTCCGTGTCTGTCTGCACGTT
GTCTGAAAGTAAACATAACAATATAGAGCTATATAGATATGTACATTTTC
TGAGCCAGGCATGAACATTTTGCGGCGTTTTGTTGCGCTCTATTTGCTAT
ACATTTTCTGTGATTGCCTCATGTTTTTTTTTTTACTCCAGACGCCTCTG
CAGCTTCGAACTCCTCGGCAGGCAGTTGCGGCTGCCCTGGGAGAGTCTCC
CATGAATATCAGTCCCGTCAAGATGAGAGGCATGTCGGCGGCAGAGGTAA
GCAGAACAAGGGACAGGTTGGGTTTACGGCAGGTGGGTGTAGGTGGCCAT
ATGAAAATGGTATATTCAATAGTGGTAGCGAAAAAAGACATTGCCTTGTT
CACCAAGGGGTATCACAGAAGGCAGGGCTTGAACCGGACCCCCCCTTCCC
CGCACTCCGGACGCTCCTGACCGCACTGCTGTGTGTGTGGATTGTGATTA
GTCTACCGGGTCGTGTAAGCGAGCTGGTAGACCTCCTTACATGCTATTCA
AGTTCTACTGCGTGTGTGTAGCGCACGCAGCAGCGTAGGGCAGGCAATCA
AGGCTGCAACATCATATTATCCGACAAGGTGATGTATTCGTCTTGCATAG
ATTCAGAATCCACCCGACATCTATGCTTGCTTCACATTATCCACATCTCG
ACTGCGCAGACCCATATCAATTAGTTAGTATGACGGATAATGACTAATAT
CCCGCGGAGTGCTGGAAAATGATATAGTGCATCCCTGTTACCCCCCCCGC
CCCGCCCCCTCCCTCTCATACCCCCTCCTCTCATTTATTGGGGTGTTTCT
CAAGCCTTGCCTTCTGTGATACCCGTATGTACACTATAAGGTAGCACCGG
TCCCTGCACTAAATCCTAATACCAGGAAACGAGGTGTCAGCGAATTGAAG
ACACCATATTCGATGTAAAGGACCATTTTTTTCCCTCTCGAAAATTACGA
TGCTTATGGTAAATACCAAGTGCTGAGGTGTTCGAAAGGCTCGTCGAGAT
ATGAATTCCGTGGTTTTTTCTGCTGCGTGCCTGTCGAACGTTGTAAATGG
TGCTTCGGGCCTATCTGCTCTCTCTTTTTTTTCCCCCGGCAGCTGGATAA
CAAGAAATGTTCATCGATCGAAAAATTGGATGACAATGGCAAAGTCAGAA
GCGAGACCTCCCTGGATGATGACGGAATCCCCGCGGACGTCAGTGTCCCC
GTCCCTGAAGAAGTCCCTGCCAAGAAAAAACGCCGGTGGGAGGTCTCCGT
CCCTCCACCGACAGAAGAAAGCGGTAGCGGTCTGGATGATGACGATAAGG
ATCGTCGTAGCGCTGGGGAAGAAGAGTATGACAGTCATGGAGAAGGTGGC
GTGGAAGATCGGGGGGGAAAAGAGAACGATCCCCGAGGGAGAAACGCCTC
TGAAGAAGTGCTGGTGGAAAGGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6364:5841..7866+

>mRNA_H-paniculata_contig6364.14167.1 ID=mRNA_H-paniculata_contig6364.14167.1|Name=mRNA_H-paniculata_contig6364.14167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig6364:5841..7866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGAATCAAGCTGAAGAGAGGCTTTAACAGTCCTTCCCTAGCAAGAGG
GATTGGGGGCGGTGGGCGCGGGCCTGCGCCTAGGTCTGGAATCAAGCTGA
AGAGAGGCTTTAACAGTCCTTCCCTAGCAAGAGGGATTGGGGGCGGTGGG
CGCGGGCCTGCGCCTAGGACGCCTCTGCAGCTTCGAACTCCTCGGCAGGC
AGTTGCGGCTGCCCTGGGAGAGTCTCCCATGAATATCAGTCCCGTCAAGA
TGAGAGGCATGTCGGCGGCAGAGACGCCTCTGCAGCTTCGAACTCCTCGG
CAGGCAGTTGCGGCTGCCCTGGGAGAGTCTCCCATGAATATCAGTCCCGT
CAAGATGAGAGGCATGTCGGCGGCAGAGCTGGATAACAAGAAATGTTCAT
CGATCGAAAAATTGGATGACAATGGCAAAGTCAGAAGCGAGACCTCCCTG
GATGATGACGGAATCCCCGCGGACGTCAGTGTCCCCGTCCCTGAAGAAGT
CCCTGCCAAGAAAAAACGCCGGTGGGAGGTCTCCGTCCCTCCACCGACAG
AAGAAAGCGGTAGCGGTCTGGATGATGACGATAAGGATCGTCGTAGCGCT
GGGGAAGAAGAGTATGACAGTCATGGAGAAGGTGGCGTGGAAGATCGGGG
GGGAAAAGAGAACGATCCCCGAGGGAGAAACGCCTCTGAAGAAGTGCTGG
TGGAAAGGAAGCTGGATAACAAGAAATGTTCATCGATCGAAAAATTGGAT
GACAATGGCAAAGTCAGAAGCGAGACCTCCCTGGATGATGACGGAATCCC
CGCGGACGTCAGTGTCCCCGTCCCTGAAGAAGTCCCTGCCAAGAAAAAAC
GCCGGTGGGAGGTCTCCGTCCCTCCACCGACAGAAGAAAGCGGTAGCGGT
CTGGATGATGACGATAAGGATCGTCGTAGCGCTGGGGAAGAAGAGTATGA
CAGTCATGGAGAAGGTGGCGTGGAAGATCGGGGGGGAAAAGAGAACGATC
CCCGAGGGAGAAACGCCTCTGAAGAAGTGCTGGTGGAAAGGAAG
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