mRNA_H-paniculata_contig63613.14164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63613.14164.1
Unique NamemRNA_H-paniculata_contig63613.14164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.140e-5
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNN 105
            QGKYD+AE L+ R++AI+EKVL PEHP +A S NN
Sbjct:   16 QGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNN 50
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.590e-5
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLK 123
            QGKY EAE L+ R++AIQEKVL PEHP +A S +N  S+L+
Sbjct:  693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 48.5 bits (114), Expect = 2.110e-5
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSV 117
            QGKY+EAE L+ RA+ I+E VL P+HP++A + NNL  +
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.860e-5
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNN 105
            QGK+ EAE L+GR+ AIQEKVL PEHP +A S NN
Sbjct:  434 QGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNN 468
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A846GGW5_9CYAN (Tetratricopeptide repeat protein n=1 Tax=Okeania sp. SIO2B3 TaxID=2607784 RepID=A0A846GGW5_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 5.740e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLK 123
            QGKYDEAE L  R++AI+EK+L  +HP L  S NNLG + +
Sbjct:  114 QGKYDEAEPLLQRSLAIREKILRDDHPHLEESLNNLGELYR 154
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 6.410e-5
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLKSQ 129
            QGKY EAE L+ R+ AIQEKVL  EHP +A S NN   +L++Q
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 7.330e-5
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNN 105
            QGKYDE + L+ RAI I EK L P+HPALA S NN
Sbjct:   50 QGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNN 84
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: UPI000AB97D3D (tetratricopeptide repeat-containing protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI000AB97D3D)

HSP 1 Score: 49.3 bits (116), Expect = 8.360e-5
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLKS 126
            QGKYD+AE L+ +AI I E+ L P HP+LA S+NNL  + ++
Sbjct:    2 QGKYDDAEPLYLKAIQIYEQSLPPSHPSLATSYNNLAGLYRT 43
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BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A0J9EWN6_9CYAN (Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0J9EWN6_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 8.890e-5
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLKSQ 129
            QG+Y+EAE L+ R++AI+EKVL   HP +A+S NNL S   SQ
Sbjct:   19 QGRYNEAEPLYQRSLAIREKVLGENHPDVALSLNNLASFYLSQ 61
[Close]
BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Match: A0A7C7YGX5_9DELT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YGX5_9DELT)

HSP 1 Score: 46.6 bits (109), Expect = 9.280e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNN 105
            QG+Y EAE L  R++AI+EK L PEHPA+A S NN
Sbjct:   31 QGRYAEAEPLVKRSLAIKEKALGPEHPAVAQSLNN 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63613.14164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K8Z8_9PHAE1.140e-565.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI1.590e-560.98NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
UPI0013D295282.110e-553.85tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5LJA6_9PHAE3.860e-568.57NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A846GGW5_9CYAN5.740e-556.10Tetratricopeptide repeat protein n=1 Tax=Okeania s... [more]
A0A6H5K3K8_9PHAE6.410e-558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPW2_ECTSI7.330e-565.71TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI000AB97D3D8.360e-552.38tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A0J9EWN6_9CYAN8.890e-555.81Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-... [more]
A0A7C7YGX5_9DELT9.280e-562.86Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63613contigH-paniculata_contig63613:79..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930735.4802508-CDS-H-paniculata_contig63613:78..2491622930735.4802508-CDS-H-paniculata_contig63613:78..249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63613 79..249 -
1691481428.8236325-CDS-H-paniculata_contig63613:78..2491691481428.8236325-CDS-H-paniculata_contig63613:78..249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63613 79..249 -
1622930735.4958992-CDS-H-paniculata_contig63613:552..6811622930735.4958992-CDS-H-paniculata_contig63613:552..681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63613 553..681 -
1691481428.8329234-CDS-H-paniculata_contig63613:552..6811691481428.8329234-CDS-H-paniculata_contig63613:552..681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63613 553..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63613.14164.1prot_H-paniculata_contig63613.14164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63613 79..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63613.14164.1

>prot_H-paniculata_contig63613.14164.1 ID=prot_H-paniculata_contig63613.14164.1|Name=mRNA_H-paniculata_contig63613.14164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
QGKYDEAEALFGRAIAIQEKVLVPEHPALAVSFNNLGSVLKSQGKYDEAE
ALYGRAIAILERVLGREHRDLAASLNNLGGVLQSQVSHVTACMLIGRAR*
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mRNA from alignment at H-paniculata_contig63613:79..681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63613.14164.1 ID=mRNA_H-paniculata_contig63613.14164.1|Name=mRNA_H-paniculata_contig63613.14164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig63613:79..681- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCAAGTACGACGAGGCGGAAGCGTTATTCGGCAGAGCCATTGCTAT
CCAAGAGAAGGTCCTGGTCCCGGAGCATCCGGCTCTGGCCGTATCGTTCA
ATAACCTGGGTAGCGTGTTGAAGAGTCAGGTGAGCCATGTTACGGCGTGT
ATGTTGATTGGACGGGCACGTTAGGACCTGGGGAATACGTTAATGGCGCT
TCTGTGGACGGCGGGAGTAAACAGTTCTCGAGATACCCTGGTGCATAGAA
GAGGGTGTCGGTGTGTGTATCGCGTGGCTAAGCAGGTGGGCGGCGTTGTT
GGTCAGCACCGGTAAGAGTCGTGGAAGTGGTCGGATAACTCCGACGGTCT
GCTGTACGAGTGTCTACGACACACCGGGTGGTCTATTTCTCAGCCTGAGC
TAACACGTGGGGCGGAAATGTTGGTTTTTCAGGGCAAGTACGACGAGGCG
GAAGCGTTATACGGCAGAGCCATTGCTATCCTAGAAAGGGTCCTGGGCCG
GGAGCATCGAGATCTGGCCGCATCACTCAATAACCTGGGTGGCGTGTTGC
AGAGTCAGGTGAGTCATGTTACGGCGTGTATGTTGATTGGACGGGCACGT
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig63613:79..681-

>mRNA_H-paniculata_contig63613.14164.1 ID=mRNA_H-paniculata_contig63613.14164.1|Name=mRNA_H-paniculata_contig63613.14164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig63613:79..681- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCAAGTACGACGAGGCGGAAGCGTTATTCGGCAGAGCCATTGCTAT
CCAAGAGAAGGTCCTGGTCCCGGAGCATCCGGCTCTGGCCGTATCGTTCA
ATAACCTGGGTAGCGTGTTGAAGAGTCAGCAGGGCAAGTACGACGAGGCG
GAAGCGTTATTCGGCAGAGCCATTGCTATCCAAGAGAAGGTCCTGGTCCC
GGAGCATCCGGCTCTGGCCGTATCGTTCAATAACCTGGGTAGCGTGTTGA
AGAGTCAGGGCAAGTACGACGAGGCGGAAGCGTTATACGGCAGAGCCATT
GCTATCCTAGAAAGGGTCCTGGGCCGGGAGCATCGAGATCTGGCCGCATC
ACTCAATAACCTGGGTGGCGTGTTGCAGAGTCAGGTGAGTCATGTTACGG
CGTGTATGTTGATTGGACGGGCACGTTAGGGCAAGTACGACGAGGCGGAA
GCGTTATACGGCAGAGCCATTGCTATCCTAGAAAGGGTCCTGGGCCGGGA
GCATCGAGATCTGGCCGCATCACTCAATAACCTGGGTGGCGTGTTGCAGA
GTCAGGTGAGTCATGTTACGGCGTGTATGTTGATTGGACGGGCACGTTAG
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