prot_H-paniculata_contig636.14162.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig636.14162.1
Unique Nameprot_H-paniculata_contig636.14162.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length82
Homology
[Close]
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.890e-11
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 0 
Query:    1 MFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERG-----------------------QHYEFDVTIDAEWYQ 55
            M I A +RPDP+ DFDGKIGIWR+CV + AQR+S +                           + YEFD TIDAEWY+
Sbjct:  195 MVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYK 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.890e-1143.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig636contigH-paniculata_contig636:33861..34197 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig636.14162.1mRNA_H-paniculata_contig636.14162.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig636 33796..34218 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig636.14162.1 ID=prot_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERGQHYEFDVTID
AEWYQGPTRDKTHRGNSTNSGGTGGGETLIS*
back to top