mRNA_H-paniculata_contig636.14162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig636.14162.1
Unique NamemRNA_H-paniculata_contig636.14162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.020e-15
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 KGHIPKVMFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERG-----------------------QHYEFDVTIDAEWYQ 186
            + H+PK+M I A +RPDP+ DFDGKIGIWR+CV + AQR+S +                           + YEFD TIDAEWY+
Sbjct:  188 ESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYK 272          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.620e-8
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            P R GA + V++D+ +     PH   D P  L   GR  GW N+ L+ QPAQSPD NV DLGFF +++S
Sbjct:  283 PGRRGATIYVQQDNAK-----PHVAVDDPEVL-AAGRKEGW-NIQLMAQPAQSPDFNVLDLGFFNAIQS 344          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 53.1 bits (126), Expect = 3.590e-6
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query:  189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            PH   D P  +     DGGW ++++  QPA SPD NVNDLGFFAS++S
Sbjct:   44 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 89          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A3N3S5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N3S5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.550e-6
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  117 KLCPVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFF 317
            K  P R    + V++D+      GPH   D    L E G++GGW ++ +V+QP +SPD+NV DLGFF
Sbjct:   61 KKWPGRKTTTIMVQQDN-----AGPHVQDDNADIL-EAGQEGGW-DIQMVSQPPRSPDMNVLDLGFF 120          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 53.1 bits (126), Expect = 7.010e-6
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query:  189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            PH   D P  +     DGGW ++++  QPA SPD NVNDLGFFAS++S
Sbjct:  145 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 190          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: V9F261_PHYPR (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F261_PHYPR)

HSP 1 Score: 53.1 bits (126), Expect = 8.040e-6
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query:  189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            PH   D P  +     DGGW ++++  QPA SPD NVNDLGFFAS++S
Sbjct:   25 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 70          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W4GPA3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPA3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.600e-6
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3
Query:  126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            P R G  + +++D+ R     PH   D    +    R  GW N+ LV QPA SPD NV+DLGFF +++S
Sbjct:  214 PGRRGGTIYLQQDNAR-----PHVAVDDAEVV-AASRKNGW-NIQLVAQPAMSPDFNVHDLGFFNAIQS 275          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 52.4 bits (124), Expect = 1.050e-5
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            P  +   + +++D+ R     PH   D P  L E  +DG   +++L+ QPAQSPDLNV DLGFF ++++
Sbjct:   74 PENSCKTIWIQQDNAR-----PHINIDDPEFLEEANKDGF--DMHLICQPAQSPDLNVLDLGFFRAIQA 135          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W4GF08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GF08_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-5
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            PH   + P  +   GR GGW  ++L +QPAQSPDLNV DLG+F +++S
Sbjct:  299 PHVSVNDPAVI-AAGRQGGW-TISLCSQPAQSPDLNVLDLGYFNAIQS 344          
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A5AGK8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGK8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.840e-5
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 3
Query:  114 EKLCPVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
            +++ P R G+ + +++D+ R     PH   D    +   G   GW N+ LV QPA SPD NV DLGFF S+++
Sbjct:  278 KRMWPGRRGSPIYIQQDNAR-----PHVALDDAA-VTAAGVADGW-NIQLVCQPAMSPDFNVLDLGFFNSIQA 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.020e-1543.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5AA16_9STRA5.620e-846.38Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A081AGH7_PHYPR3.590e-652.08Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
A0A6A3N3S5_9STRA4.550e-641.79Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
W2PEH8_PHYPN7.010e-652.08Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9F261_PHYPR8.040e-652.08DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
W4GPA3_9STRA9.600e-640.58Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000B778AD21.050e-539.13uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
W4GF08_9STRA2.680e-550.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AGK8_9STRA2.840e-538.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig636contigH-paniculata_contig636:33796..34218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig636.14162.1prot_H-paniculata_contig636.14162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig636 33861..34197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.8023214-UTR-H-paniculata_contig636:33795..338601622930734.8023214-UTR-H-paniculata_contig636:33795..33860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig636 33796..33860 -
1691481428.5253992-UTR-H-paniculata_contig636:33795..338601691481428.5253992-UTR-H-paniculata_contig636:33795..33860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig636 33796..33860 -
1622930734.8512025-UTR-H-paniculata_contig636:34197..342181622930734.8512025-UTR-H-paniculata_contig636:34197..34218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig636 34198..34218 -
1691481428.5636482-UTR-H-paniculata_contig636:34197..342181691481428.5636482-UTR-H-paniculata_contig636:34197..34218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig636 34198..34218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.8190453-CDS-H-paniculata_contig636:33860..339391622930734.8190453-CDS-H-paniculata_contig636:33860..33939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig636 33861..33939 -
1691481428.536164-CDS-H-paniculata_contig636:33860..339391691481428.536164-CDS-H-paniculata_contig636:33860..33939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig636 33861..33939 -
1622930734.8362439-CDS-H-paniculata_contig636:34030..341971622930734.8362439-CDS-H-paniculata_contig636:34030..34197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig636 34031..34197 -
1691481428.5458703-CDS-H-paniculata_contig636:34030..341971691481428.5458703-CDS-H-paniculata_contig636:34030..34197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig636 34031..34197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig636.14162.1

>prot_H-paniculata_contig636.14162.1 ID=prot_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERGQHYEFDVTID
AEWYQGPTRDKTHRGNSTNSGGTGGGETLIS*
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mRNA from alignment at H-paniculata_contig636:33796..34218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig636.14162.1 ID=mRNA_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig636:33796..34218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGTCACATTCCTAAGGTGATGTTCATCTGCGCCGTTTCGCGTCCAGA TCCTTCCCGCGATTTCGACGGCAAGATTGGAATTTGGCGTGTTTGTGTCA CCAAGCAGGCGCAGAGAAACTCTGCCCGGTGCGAACGGGGGCAGCATTAC GAGTTCGACGTGACCATTGACGCTGAGTGGTACCAGGGGTGATACAAGGA CTCTTTTCTCCCAACATTGAAGGAAAATATGCCGTGATTGGAAGGTGAGG AAGTGGTCGCGCAGCAGAACGGAACGAAGCCCCACGCGGGATAAGACACA CCGCGGAAACTCAACGAACTCGGGAGGGACGGGGGGTGGTGAAACGTTAA TCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAACGTCAACGATTTGG GGTTCTTTGCATCCCTGAAAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig636:33796..34218-

>mRNA_H-paniculata_contig636.14162.1 ID=mRNA_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig636:33796..34218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATCTGCGCCGTTTCGCGTCCAGATCCTTCCCGCGATTTCGACGG
CAAGATTGGAATTTGGCGTGTTTGTGTCACCAAGCAGGCGCAGAGAAACT
CTGCCCGGTGCGAACGGGGGCAGCATTACGAGTTCGACGTGACCATTGAC
GCTGAGTGGTACCAGGGATGTTCATCTGCGCCGTTTCGCGTCCAGATCCT
TCCCGCGATTTCGACGGCAAGATTGGAATTTGGCGTGTTTGTGTCACCAA
GCAGGCGCAGAGAAACTCTGCCCGGTGCGAACGGGGGCAGCATTACGAGT
TCGACGTGACCATTGACGCTGAGTGGTACCAGGGCCCCACGCGGGATAAG
ACACACCGCGGAAACTCAACGAACTCGGGAGGGACGGGGGGTGGTGAAAC
GTTAATCTCGTAACCCCACGCGGGATAAGACACACCGCGGAAACTCAACG
AACTCGGGAGGGACGGGGGGTGGTGAAACGTTAATCTCGTAA
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