mRNA_H-paniculata_contig636.14162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 5.020e-15 Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query: 1 KGHIPKVMFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERG-----------------------QHYEFDVTIDAEWYQ 186
+ H+PK+M I A +RPDP+ DFDGKIGIWR+CV + AQR+S + + YEFD TIDAEWY+
Sbjct: 188 ESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYK 272
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.620e-8 Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3
Query: 126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
P R GA + V++D+ + PH D P L GR GW N+ L+ QPAQSPD NV DLGFF +++S
Sbjct: 283 PGRRGATIYVQQDNAK-----PHVAVDDPEVL-AAGRKEGW-NIQLMAQPAQSPDFNVLDLGFFNAIQS 344
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR) HSP 1 Score: 53.1 bits (126), Expect = 3.590e-6 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query: 189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
PH D P + DGGW ++++ QPA SPD NVNDLGFFAS++S
Sbjct: 44 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 89
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A3N3S5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N3S5_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 4.550e-6 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 3
Query: 117 KLCPVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFF 317
K P R + V++D+ GPH D L E G++GGW ++ +V+QP +SPD+NV DLGFF
Sbjct: 61 KKWPGRKTTTIMVQQDN-----AGPHVQDDNADIL-EAGQEGGW-DIQMVSQPPRSPDMNVLDLGFF 120
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN) HSP 1 Score: 53.1 bits (126), Expect = 7.010e-6 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query: 189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
PH D P + DGGW ++++ QPA SPD NVNDLGFFAS++S
Sbjct: 145 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 190
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: V9F261_PHYPR (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F261_PHYPR) HSP 1 Score: 53.1 bits (126), Expect = 8.040e-6 Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 3
Query: 189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
PH D P + DGGW ++++ QPA SPD NVNDLGFFAS++S
Sbjct: 25 PHVAADDPEVVAACS-DGGW-DMSIKPQPANSPDFNVNDLGFFASIQS 70
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W4GPA3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GPA3_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.600e-6 Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3
Query: 126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
P R G + +++D+ R PH D + R GW N+ LV QPA SPD NV+DLGFF +++S
Sbjct: 214 PGRRGGTIYLQQDNAR-----PHVAVDDAEVV-AASRKNGW-NIQLVAQPAMSPDFNVHDLGFFNAIQS 275
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2) HSP 1 Score: 52.4 bits (124), Expect = 1.050e-5 Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 3
Query: 126 PVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
P + + +++D+ R PH D P L E +DG +++L+ QPAQSPDLNV DLGFF ++++
Sbjct: 74 PENSCKTIWIQQDNAR-----PHINIDDPEFLEEANKDGF--DMHLICQPAQSPDLNVLDLGFFRAIQA 135
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: W4GF08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GF08_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.680e-5 Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 3
Query: 189 PHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
PH + P + GR GGW ++L +QPAQSPDLNV DLG+F +++S
Sbjct: 299 PHVSVNDPAVI-AAGRQGGW-TISLCSQPAQSPDLNVLDLGYFNAIQS 344
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Match: A0A6A5AGK8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGK8_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.840e-5 Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 3
Query: 114 EKLCPVRTGAALRVRRDH*R*VVPGPHAG*DTPRKLNELGRDGGW*NVNLVTQPAQSPDLNVNDLGFFASLKS 332
+++ P R G+ + +++D+ R PH D + G GW N+ LV QPA SPD NV DLGFF S+++
Sbjct: 278 KRMWPGRRGSPIYIQQDNAR-----PHVALDDAA-VTAAGVADGW-NIQLVCQPAMSPDFNVLDLGFFNSIQA 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig636.14162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig636.14162.1 >prot_H-paniculata_contig636.14162.1 ID=prot_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp MFICAVSRPDPSRDFDGKIGIWRVCVTKQAQRNSARCERGQHYEFDVTIDback to top mRNA from alignment at H-paniculata_contig636:33796..34218- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig636.14162.1 ID=mRNA_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig636:33796..34218- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig636:33796..34218- >mRNA_H-paniculata_contig636.14162.1 ID=mRNA_H-paniculata_contig636.14162.1|Name=mRNA_H-paniculata_contig636.14162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig636:33796..34218- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |