mRNA_H-paniculata_contig6358.14155.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6358.14155.1
Unique NamemRNA_H-paniculata_contig6358.14155.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: D7G402_ECTSI (Coatomer subunit zeta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G402_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.400e-37
Identity = 74/113 (65.49%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:    1 NLVFNLSAGLDCWIDSQVGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDII 339
            ++V    +GLD  +   VGS+DENELILT VLDALHETL ILLR Q+DRRTLL+NLA+VLL++DELVDAGKILEIDPSAIANRVLMRGADAR PQ++++   Q    + ++ I
Sbjct:   65 DVVAVFRSGLDVHL-YVVGSTDENELILTAVLDALHETLLILLRGQIDRRTLLDNLALVLLSIDELVDAGKILEIDPSAIANRVLMRGADARGPQSSDVNFPQAIASVREEFI 176
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A836C7T9_9STRA (Coatomer subunit zeta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7T9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.700e-31
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   52 VGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDII 339
            VGS+DENELILT VLDAL+++L  LLR QLD+RTLL+NLA+VLLAVDEL D GKILE+DPSAI NRVLM+GA    P  TELT+QQ      ++ I
Sbjct:   81 VGSADENELILTLVLDALYDSLNALLRGQLDKRTLLDNLALVLLAVDELCDGGKILEVDPSAITNRVLMKGATGGPPPMTELTIQQAIATAKEEFI 176
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A7S2V887_9STRA (Coatomer subunit zeta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V887_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.150e-26
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   52 VGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQAT---------ELTVQQVCMQIVDDII 339
            +GSSDENELILT VLDAL+++L +LLR+QLDRRTLLENLA+VLLAVDE++D G +LE D +AIANRVLM+ A      AT         ELT+        D++I
Sbjct:   81 IGSSDENELILTAVLDALYDSLSLLLRSQLDRRTLLENLALVLLAVDEVIDGGLLLETDATAIANRVLMKDAAGGAQSATGAASSVPFTELTITSALQTAKDELI 185
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A2R5G148_9STRA (Coatomer subunit zeta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G148_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.050e-24
Identity = 61/116 (52.59%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:    1 NLVFNLSAGLDCWIDSQVGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDIIMGF 348
            N V    AG+D  I    G  DENELILT +LDA++E L  +LR+ L++RTLL+NL +VLL VDELVD G ILE DP AIANRVLM+GA    P   ELT+ Q      D +   F
Sbjct:   62 NTVVVYRAGIDV-IFYVCGEPDENELILTTILDAMYEALSGILRSHLEKRTLLDNLDLVLLTVDELVDGGLILETDPVAIANRVLMKGATGETPM-NELTISQALQSARDQLAKSF 175
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A7S2DB18_9STRA (Coatomer subunit zeta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DB18_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.860e-24
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:   52 VGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDII 339
            VGS++ENELILT VLD LHE L +LLR Q DRR+LL++L +V+L +DE+VD G ILE++P +IA+R LMRG D  Q   TELT+ Q      + +I
Sbjct:   95 VGSNEENELILTGVLDGLHEALNVLLRGQTDRRSLLDSLELVILCIDEVVDGGMILEMEPQSIASRALMRGVDGGQVPITELTIGQALASAREQLI 190
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: F0YL15_AURAN (Coatomer subunit zeta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL15_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 1.990e-20
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:    4 LVFNLSAGLDCWIDSQ---VGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDI 336
            ++ N  A   C  D++   +GS++ENE+IL  VLD L E L  LLR QL+ R LLENL  V+LAVDELVD G ILE DP +I +RVLMRG +  QP  T++++ Q      D +
Sbjct:   67 MLDNTIAIFRCGADTRFYVLGSAEENEIILNLVLDGLFEALNTLLRGQLESRALLENLETVMLAVDELVDGGMILETDPQSITSRVLMRGVEGTQP-ITDMSMSQAIATAKDQL 179
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A7S3JT64_9STRA (Coatomer subunit zeta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JT64_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.990e-20
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:   52 VGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQVCMQIVDDI 336
            VGS DENE+IL  VLDAL+  L  LLR Q+D R++L+NL + +L+VDELVD G ILEIDP  I NRVLMR  DA  P  T+++V Q      D +
Sbjct:   93 VGSMDENEIILNMVLDALYTALSTLLRGQMDARSILDNLELTMLSVDELVDGGIILEIDPQNIVNRVLMRPDDAIHP-ITDMSVSQALATAKDQL 186
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A0D2KUN1_9CHLO (Coatomer subunit zeta n=2 Tax=Selenastraceae TaxID=35466 RepID=A0A0D2KUN1_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 5.120e-20
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:   55 GSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELTVQQ 309
            G  DENELIL  VL A +E++ ILLR Q+D++T+LENL +VLLAVDE+VD G ILE +P  +A+RV MRGAD   P A E T  Q
Sbjct:   82 GGQDENELILYSVLQAFYESVSILLRQQVDKKTVLENLDLVLLAVDEIVDRGLILETEPQVVASRVSMRGADGDTP-AVEQTFSQ 165
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A0A6T5Q8Y8_HETAK (Coatomer subunit zeta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q8Y8_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 2.160e-19
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 NLVFNLSAGLDCWIDSQVGSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQP 282
            N +    AG+D       GS+ ENELIL +VLD  ++ L  LLR QLDRRT+L+N+A+VLLA DELVDAG ILE D   IA RVLMRGA+ + P
Sbjct:   64 NTIIVFRAGIDLNF-CIFGSAQENELILANVLDGFYDALNQLLRGQLDRRTVLDNMALVLLAQDELVDAGLILETDARDIAARVLMRGAEGQGP 156
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BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Match: A8JET7_CHLRE (Coatomer subunit zeta n=11 Tax=Chlamydomonadales TaxID=3042 RepID=A8JET7_CHLRE)

HSP 1 Score: 86.7 bits (213), Expect = 6.260e-19
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:   55 GSSDENELILTHVLDALHETLCILLRTQLDRRTLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQ 279
            GS DENELIL  VL A +E++ ILLR Q++++T+LENL +VLLA+DE+VD G ILE +P+ IA+RV MRGAD  Q
Sbjct:   83 GSLDENELILYTVLQAFYESVTILLRQQVEKKTVLENLDLVLLAMDEIVDGGIILETEPAMIASRVTMRGADGEQ 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6358.14155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G402_ECTSI2.400e-3765.49Coatomer subunit zeta n=2 Tax=Ectocarpus TaxID=287... [more]
A0A836C7T9_9STRA2.700e-3166.67Coatomer subunit zeta n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2V887_9STRA9.150e-2657.14Coatomer subunit zeta n=1 Tax=Fibrocapsa japonica ... [more]
A0A2R5G148_9STRA1.050e-2452.59Coatomer subunit zeta n=1 Tax=Hondaea fermentalgia... [more]
A0A7S2DB18_9STRA1.860e-2455.21Coatomer subunit zeta n=1 Tax=Dictyocha speculum T... [more]
F0YL15_AURAN1.990e-2048.25Coatomer subunit zeta n=1 Tax=Aureococcus anophage... [more]
A0A7S3JT64_9STRA1.990e-2054.74Coatomer subunit zeta n=1 Tax=Aureoumbra lagunensi... [more]
A0A0D2KUN1_9CHLO5.120e-2058.82Coatomer subunit zeta n=2 Tax=Selenastraceae TaxID... [more]
A0A6T5Q8Y8_HETAK2.160e-1956.38Coatomer subunit zeta n=1 Tax=Heterosigma akashiwo... [more]
A8JET7_CHLRE6.260e-1961.33Coatomer subunit zeta n=11 Tax=Chlamydomonadales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6358contigH-paniculata_contig6358:670..1555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog2880.D7G402
Preferred nameCOPZ1
KEGG koko:K20472
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0009994,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019953,GO:0022412,GO:0022414,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030135,GO:0030137,GO:0030154,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0046907,GO:0048193,GO:0048468,GO:0048475,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:1901998,GO:1905952
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5541@1,KOG3343@2759
Ec32 ortholog descriptionCoatomer protein complex, zeta sub-unit
Ec32 orthologEc-19_000620.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.3908005-CDS-H-paniculata_contig6358:669..8791622930734.3908005-CDS-H-paniculata_contig6358:669..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 670..879 -
1691481428.3052866-CDS-H-paniculata_contig6358:669..8791691481428.3052866-CDS-H-paniculata_contig6358:669..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 670..879 -
1622930734.4075153-CDS-H-paniculata_contig6358:1417..15551622930734.4075153-CDS-H-paniculata_contig6358:1417..1555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 1418..1555 -
1691481428.3152647-CDS-H-paniculata_contig6358:1417..15551691481428.3152647-CDS-H-paniculata_contig6358:1417..1555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6358 1418..1555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6358.14155.1prot_H-paniculata_contig6358.14155.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6358 670..1555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6358.14155.1

>prot_H-paniculata_contig6358.14155.1 ID=prot_H-paniculata_contig6358.14155.1|Name=mRNA_H-paniculata_contig6358.14155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
NLVFNLSAGLDCWIDSQVGSSDENELILTHVLDALHETLCILLRTQLDRR
TLLENLAMVLLAVDELVDAGKILEIDPSAIANRVLMRGADARQPQATELT
VQQVCMQIVDDIIMGF
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mRNA from alignment at H-paniculata_contig6358:670..1555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6358.14155.1 ID=mRNA_H-paniculata_contig6358.14155.1|Name=mRNA_H-paniculata_contig6358.14155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=886bp|location=Sequence derived from alignment at H-paniculata_contig6358:670..1555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTAGTTTTCAACTTGTCAGCTGGTTTGGATTGTTGGATTGATTCTCA
GGTGGGCTCTTCGGACGAAAATGAGCTTATCCTTACTCATGTGTTGGACG
CCCTGCACGAGACTCTCTGCATCCTTCTCAGAACTCAGGTATGTTACTTA
CCGTTACAGCTTGGCTATTCTCCAGTATAACCGGGGGGATTTCTTGTGAT
AAATGGCAGTTACCAAAACTTTCTGAAGCCATAGGAAAATGCGGTTTTGT
GGTCTTGACTTGAATTTTTTTTTTTAATATATTTTCAAAACACCTCGATG
AACAACATTTCTAGTCGCGCGCACGGTACTGATACGATAATCCGCACGAG
CTAGCTCATTGTATTTGTCGAGATAACATCAAACTCTCGAATACTATGAT
ATATCTCACTGTACTAATGATGCCGTGTCAAAAGCGCTGCTTTCCTCTGA
TAAGTCAGTCATTATTCATAATCGGTAAGTGAGGGTTCTGAGGAGACCGA
CGTCTGAGAACATGAAAAATTCGAAGTTCGTCCCCGCCCTCCGTCTTCGA
ACACAGTAAGTGCTTGTCGCTGATTCTGCATGTCCGGCGGATGGGCTTGC
TTCTTTTTTTTTATTCGGTGTTCGTTTTGTGGCTCTTTCCTGGTATGATC
ATTTATTGCTTCTTGTCGTTTTTCAGTTGGACCGCCGAACACTGCTTGAA
AACCTCGCGATGGTATTGCTAGCTGTGGATGAGCTCGTGGATGCTGGCAA
AATATTAGAGATCGACCCTTCGGCGATTGCCAACCGGGTGTTGATGAGGG
GAGCAGACGCGCGGCAGCCTCAGGCAACTGAGCTCACGGTGCAGCAGGTA
TGCATGCAGATAGTAGATGATATCATCATGGGCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig6358:670..1555-

>mRNA_H-paniculata_contig6358.14155.1 ID=mRNA_H-paniculata_contig6358.14155.1|Name=mRNA_H-paniculata_contig6358.14155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig6358:670..1555- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTTAGTTTTCAACTTGTCAGCTGGTTTGGATTGTTGGATTGATTCTCA
GGTGGGCTCTTCGGACGAAAATGAGCTTATCCTTACTCATGTGTTGGACG
CCCTGCACGAGACTCTCTGCATCCTTCTCAGAACTCAGAATTTAGTTTTC
AACTTGTCAGCTGGTTTGGATTGTTGGATTGATTCTCAGGTGGGCTCTTC
GGACGAAAATGAGCTTATCCTTACTCATGTGTTGGACGCCCTGCACGAGA
CTCTCTGCATCCTTCTCAGAACTCAGTTGGACCGCCGAACACTGCTTGAA
AACCTCGCGATGGTATTGCTAGCTGTGGATGAGCTCGTGGATGCTGGCAA
AATATTAGAGATCGACCCTTCGGCGATTGCCAACCGGGTGTTGATGAGGG
GAGCAGACGCGCGGCAGCCTCAGGCAACTGAGCTCACGGTGCAGCAGGTA
TGCATGCAGATAGTAGATGATATCATCATGGGCTTTTTGGACCGCCGAAC
ACTGCTTGAAAACCTCGCGATGGTATTGCTAGCTGTGGATGAGCTCGTGG
ATGCTGGCAAAATATTAGAGATCGACCCTTCGGCGATTGCCAACCGGGTG
TTGATGAGGGGAGCAGACGCGCGGCAGCCTCAGGCAACTGAGCTCACGGT
GCAGCAGGTATGCATGCAGATAGTAGATGATATCATCATGGGCTTT
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