mRNA_H-paniculata_contig633.14122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig633.14122.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE) HSP 1 Score: 371 bits (952), Expect = 9.750e-110 Identity = 226/543 (41.62%), Postives = 276/543 (50.83%), Query Frame = 3
Query: 555 RPKVSVKQAMQQWSADSLDLRRLKYKRVYVCKATTLPDVLSEFWSLTADCAQANYQAISDDRDYAAHVLFVIPHCDLLKDYGMMRHLD--------------------------------KVVDFCSGGCTDFGRTVTMQHYHPDFVLPPS---ASSQDGKKERRNHGRAHDSTTVHPTDLARVVNLSRSPFPAFGLTVAGGNAARSDPTQLGDKTGRFRLDLEMLYNSVSGCSTDDDVDAHGSEHGTIPSEPHVVMDKTQKWLAGCAEAL----EGSGGDEAERDSYGRSLNSA----------------------------------GGFVMTSFTTAEEVFSEAWSIVRDLQARVAPAVTNETNIGKSFSA-----------------------------------SKPSCSTSQGQQEAXXXXXXXXXXXXXXXXXRVVRDEPLAATLLVAPRVHPFNAALFENLSLNLAIALKQTPIMDHIEVEVYHPEYVCDSGNIDPIRRSPFPTLLIKHCGLKDQLFEPSGTYRHAVPPIQIPLE 1859
R +KQA++ W+ +SLDLRR + KRV++CKA TLP+VLSEFWSL A AQ Y A++ D DYAAH LFV P C LLK+Y MMRHLD KV+DFCSGGC+DFGRTVT+QHYHPDFVLPPS +SS + N G L+R VN SR+P+P FGLT A G+ RS+P + DK G RLDLE++YNSV+G STDD VD+ G G IPS V DKT WL AL EG+ G ER + G S GG V + + E++ EA + + AP + +K + G Q+ V + LA+TLLVAPR+HPFNAA FEN + LAIALKQ PI+D IEVEVYHPE VCD G ID RRSP+PTLL+KHCGLKD LFEPSG YRH +PP+++PLE
Sbjct: 110 RQNTLIKQAVEAWAEESLDLRRFQGKRVHICKAETLPEVLSEFWSLAAMMAQEKYSAMAGDHDYAAHALFVAPRCALLKNYAMMRHLDPSLSEEIGTCFFIASSPEGLKAKTSRFVFARDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKG------------LSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSGGGGRGGIPSSLEEVQDKTLDWLYSLPPALRAGQEGAVGGVEERGAAGDEAVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGGLVTSGLNSPEKLREEALPFLAAAEHEEAPPSPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVEHWTKAATKLKAGAQQDVADEDRGEGAAEAAVGAGVEAKKSLASTLLVAPRLHPFNAAQFENFARTLAIALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLE 640
BLAST of mRNA_H-paniculata_contig633.14122.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI) HSP 1 Score: 334 bits (857), Expect = 2.500e-98 Identity = 193/442 (43.67%), Postives = 235/442 (53.17%), Query Frame = 3
Query: 555 RPKVSVKQAMQQWSADSLDLRRLKYKRVYVCKATTLPDVLSEFWSLTADCAQANYQAISDDRDYAAHVLFVIPHCDLLKDYGMMRHLDKVVDFCSGGCTDFGRTVTMQHYHPDFVLPPS---ASSQDGKKERRNHGRAHDSTTVHPTDLARVVNLSRSPFPAFGLTVAGGNAARSDPTQLGDKTGRFRLDLEMLYNSVSGCSTDDDVDAHGSEHGTIPSEPHVVMDKTQKWLAGCAEAL----EGSGGDEAERDSYGRSLNSAGGFVMTSFTTAEEVFSEAWSIVRDLQARVAPAVTNETNIGKSFSASKPSCSTSQGQQEAXXXXXXXXXXXXXXXXXRVVRDEPLAATLLVAPRVHPFNAALFENLSLNLAIALKQTPIMDHIEVEVYHPEYVCDSGNIDPIRRSPFPTLLIKHCGLKDQLFEPSGTYRHAVPPIQIPLE 1859
R +KQA++ W+ +SLDLRR + KRV++CKA TLP+VLSEFWSL + AQ Y A++ DRDYAAH LFV P C LLKDY MMRHLDKV+DFCSGGC+DFGRTVT+QHYHPDFVLPPS +SS + N G L+R VN SR+P+P FGLT A G+ RS+P + DK G RLDLE++YNSV+G STDD VD+HGS HGTIPS P V DK WL AL EG+ G ER + G + +TA V + S+ L + L +P +VYHPE VCD G ID RRSP+PTLL+KHCGLKD LFEPSG YRH +PP+++PLE
Sbjct: 122 RQNTLIKQAVEAWADESLDLRRFQGKRVHICKAETLPEVLSEFWSLASMMAQEKYSAMAGDRDYAAHALFVAPRCALLKDYAMMRHLDKVLDFCSGGCSDFGRTVTLQHYHPDFVLPPSQTRSSSXXXXVDDNNKG------------LSRFVNFSRAPYPTFGLTAAAGSLVRSEPIEKTDKIGHLRLDLELVYNSVAGRSTDDCVDSHGSPHGTIPSSPEEVQDKALDWLYSLPPALQAGQEGAEGSVEERGAAGDE----------AVSTAAIVNXXXXXXXXXXXXXXXXXXXXXXXLTSSYEGG-------------------------------------LVTSGLNSPE-------------------------------KVYHPELVCDGGVIDIDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLE 473
BLAST of mRNA_H-paniculata_contig633.14122.1 vs. uniprot
Match: A0A835ZA02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA02_9STRA) HSP 1 Score: 190 bits (482), Expect = 5.240e-48 Identity = 149/469 (31.77%), Postives = 199/469 (42.43%), Query Frame = 3
Query: 549 GKRPKVSVKQAMQQWSADSLDLRRLKYKRVYVCKATTLPDVLSEFWSLTADCAQANYQAISD-DRDYAAHVLFVIPHCDLLKDYGMMRHLDKVVDFCSGGCTDFGRTVTMQHYHPDFVLPPSASSQDGKKERRNHGRAHDSTTVHPTDLARVVNLSRSPFPAFGLTVAGGNAARSDPTQLGDKTGRFRLDLEMLYNSVSGCSTDDDVDAHGSEH--GTIPSEPHV--VMDKTQKWLAGCAEALEG--SGGDEAERDSY--------GRSLNSA-------------GGFV----------MTSFTTAEEVFSEAWSIVRDLQARVAPAVTNETNI-GKSFSASKPSCSTSQGQQEAXXXXXXXXXXXXXXXXXRVVRDEPLAATLLVAPRVHPFNAALFENLSLNLAIALKQTPIMDHIEVEVYHPEYVCDSGNIDPIRRSPFPTLLIKHCGLKDQLFEPSGTYRHAVP 1838
G PK VK AM W A ++ RV V TLP VLS+FW+ ADC +A Y+ + D + A +LF P+C+LL D +M +DK +DFC+G C FG+TV +Q YHP ERR +PFPAFGL +A G + DK + R+ LE+L NS + S+ D + G G S P V+ KT+ W A E LEG S G A G SL + GG+V ++ T EEV S+ W V ++ A+ A N G S + S P + L VAPR H FNA F+ LAI LKQ+PI+D + +E+YHPE + D G +D RR+P+PT+ KH G K +LF R A P
Sbjct: 68 GPPPKAEVKAAMVNW-AKAVRPEGFSSSRVVVSTGRTLPAVLSQFWTAVADCVEAKYEEERNGDSGFTAQLLFAAPYCELLSDARIMAQVDKTLDFCAGSCVAFGKTVLLQQYHPQLEGGXXXXXXXXXXERR------------------------APFPAFGLRIAPGPVEAEVVST--DKIAQSRMHLELLLNSAASSSSADTIVPAGKRGYCGYPESVPTAESVLTKTKAWAA---EVLEGARSQGTAAXXXXXXXXXXAPEGLSLMPSTTGVPTRAGQQPLGGWVADLEMVFQYSISGSRTTEEVLSDLWGTVEEVIAKAAETQCRVLNADGTSHTYS------------------------------------PAISALFVAPRFHSFNAEAFKKFGATLAIVLKQSPILDDMTIELYHPEVIQDDGEVDARRRAPYPTIHFKHVGKKAELFPAPRRSRVAFP 470 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig633.14122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig633.14122.1 >prot_H-paniculata_contig633.14122.1 ID=prot_H-paniculata_contig633.14122.1|Name=mRNA_H-paniculata_contig633.14122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=574bp MMNLSPRSGYATLGLLVVALGSICSSGVQAFHQAGWWRGGRRLNHQVAKVback to top mRNA from alignment at H-paniculata_contig633:98..14577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig633.14122.1 ID=mRNA_H-paniculata_contig633.14122.1|Name=mRNA_H-paniculata_contig633.14122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14480bp|location=Sequence derived from alignment at H-paniculata_contig633:98..14577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig633:98..14577+ >mRNA_H-paniculata_contig633.14122.1 ID=mRNA_H-paniculata_contig633.14122.1|Name=mRNA_H-paniculata_contig633.14122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3444bp|location=Sequence derived from alignment at H-paniculata_contig633:98..14577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |