mRNA_H-paniculata_contig6320.14113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6320.14113.1
Unique NamemRNA_H-paniculata_contig6320.14113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6320.14113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6320contigH-paniculata_contig6320:9330..12751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size224
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6320.14113.1prot_H-paniculata_contig6320.14113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6320 9417..12751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.60457-UTR-H-paniculata_contig6320:9329..94161622930728.60457-UTR-H-paniculata_contig6320:9329..9416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6320 9330..9416 +
1691481425.8186817-UTR-H-paniculata_contig6320:9329..94161691481425.8186817-UTR-H-paniculata_contig6320:9329..9416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6320 9330..9416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.6201758-CDS-H-paniculata_contig6320:9416..94501622930728.6201758-CDS-H-paniculata_contig6320:9416..9450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6320 9417..9450 +
1691481425.8292274-CDS-H-paniculata_contig6320:9416..94501691481425.8292274-CDS-H-paniculata_contig6320:9416..9450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6320 9417..9450 +
1622930728.636189-CDS-H-paniculata_contig6320:12650..127511622930728.636189-CDS-H-paniculata_contig6320:12650..12751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6320 12651..12751 +
1691481425.8389046-CDS-H-paniculata_contig6320:12650..127511691481425.8389046-CDS-H-paniculata_contig6320:12650..12751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6320 12651..12751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6320.14113.1

>prot_H-paniculata_contig6320.14113.1 ID=prot_H-paniculata_contig6320.14113.1|Name=mRNA_H-paniculata_contig6320.14113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MLRNLALAISAACWFDDSASGKRQLDPSYYSAQPFTEVGSFIGVF
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mRNA from alignment at H-paniculata_contig6320:9330..12751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6320.14113.1 ID=mRNA_H-paniculata_contig6320.14113.1|Name=mRNA_H-paniculata_contig6320.14113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3422bp|location=Sequence derived from alignment at H-paniculata_contig6320:9330..12751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCATGAGCACGTACTCTGCTGGAGGTACGGTTCTGGCGCTGTCGTAGGG
CTGTGCCCGTTGCACCGCCAGAGCTCCAGTCCCCGACATGTTGCGGAATC
TCGCTTTAGCCATATCGGCCGGCTCGATCCCTTCGAAGGGGTCATCAGAG
CCAGGTGGCCTATCGGTCGGGGGTAGGTTGTCAAGCAGAGAGAGCAAGTT
CATTATCTTGGCCTTGTGGACCAGATTTCCGACCTTCCCTTGCAGCCGAC
GGGAGTTCCTCCTTGGCGCGTCGTGACCTCCTAGAACGTCGACGTCCGGT
GTAGGCAGCGATTCGTCTTCGCTCAGTCCTCCGTGGGTCGACGCGACCAG
CCCGGGCGGCAGCACCGCAGCTTGTTGTTCGGCGCTAACTCCTCCCTGTT
CTGCCAAAACAGGGAGAGTCGCCCCCAATGAGCGCACCATTGGTGTGCCG
GGAGGATGTGCCCGCACCCGCTCCCCCCACGATCCCGACGAACCCGCGAC
TATCTGCGGCAGCATGCCGTACACACTCCCCACCGTTGCTGACCAGTGCC
TGCTCCATGTCAAGGCGAGTCCCAACCCCCCTGAACCGGTCGACATGGCG
GCCTGGAGTCGCTGGTGGGGCAGGAAGTCGCCGGGAAGCCGGCATCGAAG
AAGGTGTTTTTTTCTGCTGGTTGCGGGTGTTCCAGGATGTTCTTCAACAT
CCATAGTCCGCCATTGTCGGTTAGTGTGCAGGCTTGGTCGGAGAGTTCGG
CATCCATCACCCTCTCCAGGAAGCAGGTCTTGAGGTCCTTGGACTTTGTA
GCGATCAGCATCTCCGCTTGTTTGTCAGCCTTAGGCGCTAGTAGGCGCGC
AAGGTGCTCTGCCCCCTTTTCCTTGACCACCGTAACGGCGTGCTGCTGAA
CGAATGCGTCGGTCCCAATCGATGTATCCACCACCACAGCCCCGCCTACC
GCTGCGATGCTGATGCTCATCGCCGCCAGCGCTGCATTCTCCCTTTCGGT
GGGGGTGTGGTTCATTGGGGGCACCGCCTTCGTCTTGGCGTTGTTGATCT
GCACTCCTATGCGTGCTATCTCTTGTACGAGGAAATGGATCGCCCGTAAA
TTTTCTTCCGTCAGCTCCCCCATTGCCAGCACCAGATCGTCCAGGTAGAC
CAATAGCTTCATCCACAGAGCCTTGAATTGTTCTCGGCACTTGCGCAAGA
TCGGTCCCGCGGGCATGCAGAAGAGGGCGGGTCCCAGTCCGTCGCCCTAG
TGGATTCCTTTGTTCGAAGAGTTTTTCCTGCGTTCACCGATGTCCATCTG
GAAATTATGTCTGCCGGCTTCTCCCCATAGAATTTGGCTACGAAAGATGC
CAGTCTTGGGGTGTGGATTGCCACTTCTTCGAAGATCGCCGCCCGCTTGA
CGGAGGTGAATGCATTGGTACTATCAAAGGCGATAAGCCAATGCCCCAAT
TGGTGGTATGCTTTTGCGCGGAGGCCCATGAGCTCCGCACCGCCCGAAAC
CGCTACCCGATATTGCCTCTCCGACACGTTAACCTTATCTGGTGTCGGCC
TATACTATCTGACCATTCCAGCGGCCAAAGTACGCCGCATCGTAGATCCT
ACGCAGATCAGGCGGCATTTGTCCCGAGCGCCGTGGGGTTGCTTTGGAGG
AACAACTCCCAGAACTCCGGCGGGAAAGCGTCGGGTTGTTCCATGGAAGC
CGCCAGAAAGATCCGACAACGGGGCCAAAACCTTCCTTACAAGCCGAGGT
GTTGAGGATGAACTGCAGATGAGAAACGTAGGCCATCGTTACTCGCCGCG
GACAGAGCGTTCATCGACTTCACGACCGCTGTCAACGTTTTGGGGTTATA
CTCGTCGTCTAGCCTCCAGGCGGCATCTCCGCCCGCGGCGAGTGAATCCT
GGCTTGTCGCTATGGCCGCTGCTTTCGCCGTTGCCAGCGCGGGCGCATCC
TCCTGGCCGAATTTCACGCTGCTTTTGCCGAAGGTATCCTCGTTGGCAGG
AGCGAGTTCATTTGACACAACGCTCTCGCCGCGTTAGAGATTCCCGTGCT
GTACCTGTACGCAGCTGCCGCCTTCCTGTATTGTTCCGCCACAGACGTGC
TCCCCATCGACCGCCAGCGGGCTACAGCGGCCTACGTGTACGCCATGAGC
CACGGGAGATGTTTTACTGTCAGTGGTGATCAATTCTCACAAATACTATG
ATTGATGTACCTCTCTTCCCTCTTCTACACCTCTTCAGGCCACGCCTTGG
GGCGCCGTACGCTACTGTTGGATCCTAGTTGTACAAATTCAGGAGATAGA
ATTGTTGAGATTGCTGGTACCCTAACCCCGGAGGTACGAAACGGGGGAGC
GACGGCTTTTCAAACACAATTATCTCGACAAGGACGGTGCTAGATACTGA
GAACGAAGAGTATGTCGTTGGAAACATGTTGCGGAGTTCTGTCGGTTGAC
GATTTCTTTCGGTTGCGTAAGGTCTCCTTTCTGAAAATAGTCGCGTGTGA
AAAACGTTGGCCCACCGGTGCAATATCTCCCAGGTTTACGGTATGTCGAT
GTTGGCATCGACTCTCGTAGGTTTCCTGCTACGGTAAAGGTAATTCGTGT
TTAGTATAGCTCGTTTCACCAAGCAGCATAGTACCCGCAGTTTTAACTGA
CTGATGTTGTGGAATGGTCGATTAAGGGAAAGTTCTACGAGTTGTCTTCA
AGGCACATTTTGGGAATATTCCAATTGGGTTTAAGAAACGAAGATATGGG
AAATCTGATAGGTAATCGGAACAGATAATCGAGTGATATTCCGGGGATAT
AGGCAAGGCTTCCTGTATGCCGTGTGCTCCCCCTTCTGTTCCACCCTCTT
CTCCCTCCAGTTCTTCACCCATTCCCTTGGGTTAATTGCAATGAAGATGA
TTTGAACCAACTGCGCCATTCAGCATTCTACCTTGCAGCAGTTTGCTTCC
CATACAGCGGATTTATCGAACATTCCAGTCTGTAGTGCTACCCTATAGCC
AGGGTATACAGTATATTGGATGTAGTACTCTTGATTTCGGACAGGTACGT
TCATGTATGTTGTCTCAGCAATCATTGAATCGGTTCACGGAATATCACTG
CAGGCGTTCATTCGTCGTACTTGGCTACACATGAAAGCCGTTTTTGCAAA
CTCAATCAAATACAAGCTCGGTGCAACTGCGTGCGAGTAGTATCCCACAG
AATATTGTTATTCACGCATGCGGCCGTTGTTCGCCCGTATAGCTTTTACA
GTCACCAGTGCTTCTATACCTTATCTCAAAAGCAATTACCGTTGGCGATC
TGTTTTCGGCCGGGTGGGAAGCTTGTTGGTTTGATGATTCCGCAAGTGGC
AAAAGACAGTTGGATCCAAGTTATTATTCTGCTCAACCTTTCACGGAGGT
AGGATCTTTTATCGGGGTATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig6320:9330..12751+

>mRNA_H-paniculata_contig6320.14113.1 ID=mRNA_H-paniculata_contig6320.14113.1|Name=mRNA_H-paniculata_contig6320.14113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig6320:9330..12751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCGGAATCTCGCTTTAGCCATATCGGCCGATGTTGCGGAATCTCG
CTTTAGCCATATCGGCCGCTTGTTGGTTTGATGATTCCGCAAGTGGCAAA
AGACAGTTGGATCCAAGTTATTATTCTGCTCAACCTTTCACGGAGGTAGG
ATCTTTTATCGGGGTATTCCTTGTTGGTTTGATGATTCCGCAAGTGGCAA
AAGACAGTTGGATCCAAGTTATTATTCTGCTCAACCTTTCACGGAGGTAG
GATCTTTTATCGGGGTATTC
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