mRNA_H-paniculata_contig632.14112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig632.14112.1
Unique NamemRNA_H-paniculata_contig632.14112.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig632.14112.1 vs. uniprot
Match: A0A6H5KMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.230e-16
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 2 
Query:   68 QAIERLDIEAAMKALDNENITLNDVKALFEDVREKSKASSTKVAALPSAQHGLVELQASKERLEARLQHLR 280
            Q IERLDIEAAM ALD+E IT + VK LF  + EK+KASST+VAALPS+Q    EL A K+RL+ RL+HLR
Sbjct:    5 QVIERLDIEAAMAALDDETITSDKVKDLFAGLGEKAKASSTRVAALPSSQLNCAELAACKQRLKDRLEHLR 75
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BLAST of mRNA_H-paniculata_contig632.14112.1 vs. uniprot
Match: D8LBC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.270e-16
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:   65 TQAIERLDIEAAMKALDNENITLNDVKALFEDVREKSKASSTKVAALPSAQHGLVELQASKERLEARLQHLR 280
            T  IE LDIEAAM ALD+E IT + VK LF  + EK+KASST+VAALPS+Q    EL+A K+RL+ RL+HLR
Sbjct:   21 TNVIEGLDIEAAMAALDDETITSDKVKDLFASLGEKAKASSTRVAALPSSQLNCAELEACKQRLKDRLEHLR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig632.14112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMH3_9PHAE1.230e-1664.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBC8_ECTSI5.270e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig632contigH-paniculata_contig632:31332..32645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size938
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig632.14112.1prot_H-paniculata_contig632.14112.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig632 31369..32008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.5223265-UTR-H-paniculata_contig632:31331..313681622930728.5223265-UTR-H-paniculata_contig632:31331..31368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig632 31332..31368 +
1691481425.7795415-UTR-H-paniculata_contig632:31331..313681691481425.7795415-UTR-H-paniculata_contig632:31331..31368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig632 31332..31368 +
1622930728.5725105-UTR-H-paniculata_contig632:32008..326451622930728.5725105-UTR-H-paniculata_contig632:32008..32645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig632 32009..32645 +
1691481425.8092-UTR-H-paniculata_contig632:32008..326451691481425.8092-UTR-H-paniculata_contig632:32008..32645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig632 32009..32645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.539811-CDS-H-paniculata_contig632:31368..314011622930728.539811-CDS-H-paniculata_contig632:31368..31401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 31369..31401 +
1691481425.789586-CDS-H-paniculata_contig632:31368..314011691481425.789586-CDS-H-paniculata_contig632:31368..31401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 31369..31401 +
1622930728.5548897-CDS-H-paniculata_contig632:31777..320081622930728.5548897-CDS-H-paniculata_contig632:31777..32008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 31778..32008 +
1691481425.8006656-CDS-H-paniculata_contig632:31777..320081691481425.8006656-CDS-H-paniculata_contig632:31777..32008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig632 31778..32008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig632.14112.1

>prot_H-paniculata_contig632.14112.1 ID=prot_H-paniculata_contig632.14112.1|Name=mRNA_H-paniculata_contig632.14112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MNGSGNGHHTQAIERLDIEAAMKALDNENITLNDVKALFEDVREKSKASS
TKVAALPSAQHGLVELQASKERLEARLQHLRLATTLN*
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mRNA from alignment at H-paniculata_contig632:31332..32645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig632.14112.1 ID=mRNA_H-paniculata_contig632.14112.1|Name=mRNA_H-paniculata_contig632.14112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig632:31332..32645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACATGTCCAAAATTGAGTCCATGCCGTCATCAGCATGAACGGCAGTG
GCAATGGACATCATACCCAGGTGACCAGCACATCCTTTCTGCATTTGATA
CATTGATGGGACACCGTGTACATTGGTGATGTATTCAAAGCGCAGAGAAG
GATGATGTGCGCGCTGTTCCGGGCACTACTTTTGTACTGTTTTCACTCTC
TCTCCATAAATACCTTGTTATCTCCTATCATAAAAGTGTATTATGTACTC
TACACATAGTAGCAGTAAGTAGCCATGCAATTCAAAACAGCGTACTACAA
CAGCATGTTCTCGATTGATGCATCGTTGGCAGTCTCCAACATCGTGGATC
ACACAACAGTTCAACCAAACAGGGTAGAATATATAGATATGCAAACATCT
GTGAACGCCAACACGCGCCATATTTTCGTGTTGAATAAATGAACAGGCGA
TTGAAAGGCTGGATATCGAAGCTGCAATGAAAGCTCTCGACAACGAAAAC
ATCACGTTGAACGATGTCAAAGCGCTCTTTGAAGATGTGCGAGAAAAATC
GAAAGCATCTTCCACTAAAGTTGCGGCCTTACCATCAGCGCAGCACGGCC
TCGTAGAACTGCAAGCATCGAAGGAGCGTCTGGAGGCTAGGTTACAACAT
CTTCGTTTGGCAACGACACTAAACTGAGGCGGCATTGTTGCTGATAGGCG
TGGCCTTGTTTTGGTTGGCTGTTCCTGGTTTGGAGTTGTTGTAGTTTATT
TCGTCATCAAGTCGTCTAGGTGACGTGACGGTCCAGTAAGGATCACAACA
GTAAACATCACAGCAGTTGTTTGGTGTAACCAAGTTGTACATAATGTATG
GTGTATATTTATGGCGTGTGAGGGCGTTTCCTGGTGCTCGCTGCACATGC
TCTGGGGGTTGCCGCCTCTCAAATGGCGTTCATGGTGTTGTTTTTGTGCA
TCGTAGTCATGCCCGTCTGTGACATTCGCATGGTGTACCATGGGACATGA
GCTGCGCGAGATAGGATATTCATGTTGAAACGTGTGGTTAGTGCGCACGG
CACTGATGCCGCTCAACAAGAGTCCGGTACATCTATTTGTGGAGCAAGCA
TTTGGTTAGGAAAAGCAGCAGCAATCAATTGGATTCATTCCCTTGAATCG
TCCGTCGTCCATAAGGTATGAATATATTTCCAACCGTGATTGCTGGCGAA
AATTTCTCATGAATTGATGAGAATCTCGAACCTCGAGCGGGTGATGTTGA
CATCTGGGCGTGGGCTCTCCGTTGATCAATACTTGAAAGACGTTCGCATT
ATCGACCTATCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig632:31332..32645+

>mRNA_H-paniculata_contig632.14112.1 ID=mRNA_H-paniculata_contig632.14112.1|Name=mRNA_H-paniculata_contig632.14112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig632:31332..32645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGGCAGTGGCAATGGACATCATACCCAGATGAACGGCAGTGGCAA
TGGACATCATACCCAGGCGATTGAAAGGCTGGATATCGAAGCTGCAATGA
AAGCTCTCGACAACGAAAACATCACGTTGAACGATGTCAAAGCGCTCTTT
GAAGATGTGCGAGAAAAATCGAAAGCATCTTCCACTAAAGTTGCGGCCTT
ACCATCAGCGCAGCACGGCCTCGTAGAACTGCAAGCATCGAAGGAGCGTC
TGGAGGCTAGGTTACAACATCTTCGTTTGGCAACGACACTAAACTGAGCG
ATTGAAAGGCTGGATATCGAAGCTGCAATGAAAGCTCTCGACAACGAAAA
CATCACGTTGAACGATGTCAAAGCGCTCTTTGAAGATGTGCGAGAAAAAT
CGAAAGCATCTTCCACTAAAGTTGCGGCCTTACCATCAGCGCAGCACGGC
CTCGTAGAACTGCAAGCATCGAAGGAGCGTCTGGAGGCTAGGTTACAACA
TCTTCGTTTGGCAACGACACTAAACTGA
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