mRNA_H-paniculata_contig63166.14105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A7D9DC69_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DC69_PARCT) HSP 1 Score: 57.0 bits (136), Expect = 8.540e-8 Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 31 GKLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
GKL C A +GK+ + P K E ++ + L+LVH+D+ GP+ +SFGG R+ + F+DDYSR
Sbjct: 428 GKLDFCEACAEGKSHRAPFKPVGEVQSKKRLQLVHSDVAGPMKTESFGGARYFVTFIDDYSR 489
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A7D9EW89_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EW89_PARCT) HSP 1 Score: 55.8 bits (133), Expect = 2.200e-7 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 31 GKLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
GKL C A +GK+ + P K E ++ + L+LVH D+ GP+ +SFGG R+ + F+DDYSR
Sbjct: 283 GKLDFCEACAEGKSHRAPFKPVGEVQSKKRLQLVHGDVTGPMKTESFGGARYFVTFIDDYSR 344
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9Y2Q7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y2Q7_LYGHE) HSP 1 Score: 55.1 bits (131), Expect = 3.960e-7 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 43 VCSAFEKGKASKQPIKNYREERTTE--LKLVHTDIVGPVNKSFGGRRFTIIFVDDYSR 210
+C + KGK S++P + + E L LVH+DI+GPV+ SF GR++ + F+DD+SR
Sbjct: 263 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDFSR 320
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A146LFV8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LFV8_LYGHE) HSP 1 Score: 55.1 bits (131), Expect = 4.090e-7 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 43 VCSAFEKGKASKQPIKNYREERTTE--LKLVHTDIVGPVNKSFGGRRFTIIFVDDYSR 210
+C + KGK S++P + + E L LVH+DI+GPV+ SF GR++ + F+DD+SR
Sbjct: 449 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDFSR 506
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: UPI0015D8DD40 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0015D8DD40) HSP 1 Score: 52.8 bits (125), Expect = 4.860e-7 Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 31 GKLGVCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
G+L VC + +GK +K+ RE L+LVH+D+ GP+N K+ GG + + F+DD+SR
Sbjct: 31 GELPVCESCLEGKMTKRSFSAKRERAKQPLRLVHSDVCGPLNVKARGGYEYFVTFIDDFSR 91
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A821Y021_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821Y021_9NEOP) HSP 1 Score: 54.7 bits (130), Expect = 5.650e-7 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 43 VCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
VC+ KGK ++QP K+ + L+LVH+D+ GP+ KS GG R+ + FVDD+SR
Sbjct: 377 VCNTCLKGKQTRQPFKHAGTRASALLELVHSDVCGPMEEKSLGGARYYVTFVDDWSR 433
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: UPI00178C80A5 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C80A5) HSP 1 Score: 53.1 bits (126), Expect = 1.830e-6 Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 34 KLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
K +CSA +KGK K K + +T L L+H D+ GPV S GG+R+T++ VDDYSR
Sbjct: 153 KENLCSACQKGKQVKNSFKPIAGDLSTSPLNLIHMDLFGPVETPSVGGKRYTLVMVDDYSR 213
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9XBJ8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XBJ8_LYGHE) HSP 1 Score: 51.6 bits (122), Expect = 3.230e-6 Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 43 VCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
VC +GK S++P + + + L LVH+D+VGP+ K SFGG R+ + +DD+SR
Sbjct: 99 VCEVCLRGKHSRKPFRASGKRASNILDLVHSDLVGPMEKQSFGGNRYILTLIDDHSR 155
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9XY84_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XY84_LYGHE) HSP 1 Score: 52.4 bits (124), Expect = 3.660e-6 Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 46 CSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
C + KGK ++ P T L L+H+D+ GP+++ SFGG R+ +IFVDDY+R
Sbjct: 94 CVSCLKGKLNRSPFPRSENRATQRLALIHSDLCGPMSEESFGGGRYMMIFVDDYTR 149
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A146LH62_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LH62_LYGHE) HSP 1 Score: 52.4 bits (124), Expect = 3.680e-6 Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 46 CSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
C + KGK ++ P T L L+H+D+ GP+++ SFGG R+ +IFVDDY+R
Sbjct: 137 CVSCLKGKLNRSPFPRSENRATQRLALIHSDLCGPMSEESFGGGRYMMIFVDDYTR 192 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig63166.14105.1 >prot_H-paniculata_contig63166.14105.1 ID=prot_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp VARQQGIRLNGKLGVCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPback to top mRNA from alignment at H-paniculata_contig63166:137..346- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig63166.14105.1 ID=mRNA_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig63166:137..346- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig63166:137..346- >mRNA_H-paniculata_contig63166.14105.1 ID=mRNA_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig63166:137..346- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |