mRNA_H-paniculata_contig63166.14105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63166.14105.1
Unique NamemRNA_H-paniculata_contig63166.14105.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A7D9DC69_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DC69_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 8.540e-8
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   31 GKLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
            GKL  C A  +GK+ + P K   E ++ + L+LVH+D+ GP+  +SFGG R+ + F+DDYSR
Sbjct:  428 GKLDFCEACAEGKSHRAPFKPVGEVQSKKRLQLVHSDVAGPMKTESFGGARYFVTFIDDYSR 489          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A7D9EW89_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EW89_PARCT)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-7
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   31 GKLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
            GKL  C A  +GK+ + P K   E ++ + L+LVH D+ GP+  +SFGG R+ + F+DDYSR
Sbjct:  283 GKLDFCEACAEGKSHRAPFKPVGEVQSKKRLQLVHGDVTGPMKTESFGGARYFVTFIDDYSR 344          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9Y2Q7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y2Q7_LYGHE)

HSP 1 Score: 55.1 bits (131), Expect = 3.960e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   43 VCSAFEKGKASKQPIKNYREERTTE--LKLVHTDIVGPVNKSFGGRRFTIIFVDDYSR 210
            +C +  KGK S++P    + +   E  L LVH+DI+GPV+ SF GR++ + F+DD+SR
Sbjct:  263 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDFSR 320          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A146LFV8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LFV8_LYGHE)

HSP 1 Score: 55.1 bits (131), Expect = 4.090e-7
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   43 VCSAFEKGKASKQPIKNYREERTTE--LKLVHTDIVGPVNKSFGGRRFTIIFVDDYSR 210
            +C +  KGK S++P    + +   E  L LVH+DI+GPV+ SF GR++ + F+DD+SR
Sbjct:  449 LCVSCVKGKQSRKPFPRDKNKTVAENPLDLVHSDILGPVDPSFSGRKYLLTFIDDFSR 506          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: UPI0015D8DD40 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0015D8DD40)

HSP 1 Score: 52.8 bits (125), Expect = 4.860e-7
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   31 GKLGVCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
            G+L VC +  +GK +K+     RE     L+LVH+D+ GP+N K+ GG  + + F+DD+SR
Sbjct:   31 GELPVCESCLEGKMTKRSFSAKRERAKQPLRLVHSDVCGPLNVKARGGYEYFVTFIDDFSR 91          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A821Y021_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821Y021_9NEOP)

HSP 1 Score: 54.7 bits (130), Expect = 5.650e-7
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   43 VCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVN-KSFGGRRFTIIFVDDYSR 210
            VC+   KGK ++QP K+     +  L+LVH+D+ GP+  KS GG R+ + FVDD+SR
Sbjct:  377 VCNTCLKGKQTRQPFKHAGTRASALLELVHSDVCGPMEEKSLGGARYYVTFVDDWSR 433          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: UPI00178C80A5 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C80A5)

HSP 1 Score: 53.1 bits (126), Expect = 1.830e-6
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   34 KLGVCSAFEKGKASKQPIKNYREERTTE-LKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
            K  +CSA +KGK  K   K    + +T  L L+H D+ GPV   S GG+R+T++ VDDYSR
Sbjct:  153 KENLCSACQKGKQVKNSFKPIAGDLSTSPLNLIHMDLFGPVETPSVGGKRYTLVMVDDYSR 213          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9XBJ8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XBJ8_LYGHE)

HSP 1 Score: 51.6 bits (122), Expect = 3.230e-6
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   43 VCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
            VC    +GK S++P +   +  +  L LVH+D+VGP+ K SFGG R+ +  +DD+SR
Sbjct:   99 VCEVCLRGKHSRKPFRASGKRASNILDLVHSDLVGPMEKQSFGGNRYILTLIDDHSR 155          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A0A9XY84_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XY84_LYGHE)

HSP 1 Score: 52.4 bits (124), Expect = 3.660e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   46 CSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
            C +  KGK ++ P        T  L L+H+D+ GP+++ SFGG R+ +IFVDDY+R
Sbjct:   94 CVSCLKGKLNRSPFPRSENRATQRLALIHSDLCGPMSEESFGGGRYMMIFVDDYTR 149          
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Match: A0A146LH62_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LH62_LYGHE)

HSP 1 Score: 52.4 bits (124), Expect = 3.680e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   46 CSAFEKGKASKQPIKNYREERTTELKLVHTDIVGPVNK-SFGGRRFTIIFVDDYSR 210
            C +  KGK ++ P        T  L L+H+D+ GP+++ SFGG R+ +IFVDDY+R
Sbjct:  137 CVSCLKGKLNRSPFPRSENRATQRLALIHSDLCGPMSEESFGGGRYMMIFVDDYTR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63166.14105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9DC69_PARCT8.540e-845.16Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9EW89_PARCT2.200e-745.16Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0A9Y2Q7_LYGHE3.960e-743.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A146LFV8_LYGHE4.090e-743.10Retrovirus-related Pol polyprotein from transposon... [more]
UPI0015D8DD404.860e-740.98hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A821Y021_9NEOP5.650e-745.61Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]
UPI00178C80A51.830e-645.90DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A0A9XBJ8_LYGHE3.230e-642.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9XY84_LYGHE3.660e-642.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A146LH62_LYGHE3.680e-642.86Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63166contigH-paniculata_contig63166:137..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930727.2803426-CDS-H-paniculata_contig63166:136..3461622930727.2803426-CDS-H-paniculata_contig63166:136..346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63166 137..346 -
1691481425.2541778-CDS-H-paniculata_contig63166:136..3461691481425.2541778-CDS-H-paniculata_contig63166:136..346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63166 137..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63166.14105.1prot_H-paniculata_contig63166.14105.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63166 137..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63166.14105.1

>prot_H-paniculata_contig63166.14105.1 ID=prot_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
VARQQGIRLNGKLGVCSAFEKGKASKQPIKNYREERTTELKLVHTDIVGP
VNKSFGGRRFTIIFVDDYSR
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mRNA from alignment at H-paniculata_contig63166:137..346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63166.14105.1 ID=mRNA_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig63166:137..346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCGCGGCAACAAGGCATAAGGTTAAACGGAAAGCTCGGTGTCTGCTC AGCGTTTGAGAAGGGGAAAGCGTCGAAGCAGCCAATAAAAAATTATAGAG AAGAGCGGACGACCGAGTTGAAGCTGGTGCACACCGACATAGTCGGACCG GTGAATAAGTCCTTCGGAGGACGTCGCTTCACCATCATCTTCGTCGACGA CTACAGCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig63166:137..346-

>mRNA_H-paniculata_contig63166.14105.1 ID=mRNA_H-paniculata_contig63166.14105.1|Name=mRNA_H-paniculata_contig63166.14105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig63166:137..346- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCGCGGCAACAAGGCATAAGGTTAAACGGAAAGCTCGGTGTCTGCTC
AGCGTTTGAGAAGGGGAAAGCGTCGAAGCAGCCAATAAAAAATTATAGAG
AAGAGCGGACGACCGAGTTGAAGCTGGTGCACACCGACATAGTCGGACCG
GTGAATAAGTCCTTCGGAGGACGTCGCTTCACCATCATCTTCGTCGACGA
CTACAGCAGAGTCGCGCGGCAACAAGGCATAAGGTTAAACGGAAAGCTCG
GTGTCTGCTCAGCGTTTGAGAAGGGGAAAGCGTCGAAGCAGCCAATAAAA
AATTATAGAGAAGAGCGGACGACCGAGTTGAAGCTGGTGCACACCGACAT
AGTCGGACCGGTGAATAAGTCCTTCGGAGGACGTCGCTTCACCATCATCT
TCGTCGACGACTACAGCAGA
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