mRNA_H-paniculata_contig6289.14054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6289.14054.1
Unique NamemRNA_H-paniculata_contig6289.14054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6289.14054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6289contigH-paniculata_contig6289:3856..4431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6289.14054.1prot_H-paniculata_contig6289.14054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6289 3856..4429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930719.2613175-CDS-H-paniculata_contig6289:3855..39621622930719.2613175-CDS-H-paniculata_contig6289:3855..3962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3856..3962 -
1691481421.3719294-CDS-H-paniculata_contig6289:3855..39621691481421.3719294-CDS-H-paniculata_contig6289:3855..3962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3856..3962 -
1622930719.27626-CDS-H-paniculata_contig6289:4341..44291622930719.27626-CDS-H-paniculata_contig6289:4341..4429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 4342..4429 -
1691481421.393095-CDS-H-paniculata_contig6289:4341..44291691481421.393095-CDS-H-paniculata_contig6289:4341..4429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 4342..4429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930719.2892008-UTR-H-paniculata_contig6289:4429..44311622930719.2892008-UTR-H-paniculata_contig6289:4429..4431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6289 4430..4431 -
1691481421.4082174-UTR-H-paniculata_contig6289:4429..44311691481421.4082174-UTR-H-paniculata_contig6289:4429..4431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6289 4430..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6289.14054.1

>prot_H-paniculata_contig6289.14054.1 ID=prot_H-paniculata_contig6289.14054.1|Name=mRNA_H-paniculata_contig6289.14054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MRQERRGERCFLYPRLLESVAGERRRLNLGQSQDILRHIKAELGRLVRRK
NADRGRDGRGGGQPA
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mRNA from alignment at H-paniculata_contig6289:3856..4431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6289.14054.1 ID=mRNA_H-paniculata_contig6289.14054.1|Name=mRNA_H-paniculata_contig6289.14054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at H-paniculata_contig6289:3856..4431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGCGGCAGGAAAGGCGAGGGGAAAGGTGCTTCTTGTACCCGCGTCTG
CTAGAAAGCGTGGCGGGGGAACGACGGCGCTTGAACCTCGGTATGTTTCA
AGCTTAACCTCAAGTTATGTTCCCGACTAGGATGGACTACGCATTGCAAT
ACGCGGGGTCACAAGGGAGGATTGGGGTCGAAATAGTGGGCGGCGTCACC
CATCGTTTTCCAGGCTCACTCATATGTGTGTTAATTATTGGTAGGTACTA
AACTGTGGTGTTCTCATACGCCGGTGCGGTATGCCAACTTATATAGTTGT
TACGGGTGCAAGGAATATGTTTCAACTTCCCTGAAAAACGTTGTTCACAG
TATCGATCACGTGGTGTTCGTTAATATCAACTAGCAGAATAGAGCTCTAG
CACCCCAGTGTACAGGGTTTTAATCATGCCGTCGTTACCCTCGTATCCCA
TTTCATACAATTACCGTAGGTCAATCTCAGGATATACTGCGGCACATTAA
GGCCGAATTAGGCCGCTTAGTGCGTCGAAAAAACGCTGACCGTGGACGTG
ACGGAAGGGGGGGGGGACAACCCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6289:3856..4431-

>mRNA_H-paniculata_contig6289.14054.1 ID=mRNA_H-paniculata_contig6289.14054.1|Name=mRNA_H-paniculata_contig6289.14054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig6289:3856..4431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCAGGAAAGGCGAGGGGAAAGGTGCTTCTTGTACCCGCGTCTGCT
AGAAAGCGTGGCGGGGGAACGACGGCGCTTGAACCTCGATGCGGCAGGAA
AGGCGAGGGGAAAGGTGCTTCTTGTACCCGCGTCTGCTAGAAAGCGTGGC
GGGGGAACGACGGCGCTTGAACCTCGGTCAATCTCAGGATATACTGCGGC
ACATTAAGGCCGAATTAGGCCGCTTAGTGCGTCGAAAAAACGCTGACCGT
GGACGTGACGGAAGGGGGGGGGGACAACCCGCCGTCAATCTCAGGATATA
CTGCGGCACATTAAGGCCGAATTAGGCCGCTTAGTGCGTCGAAAAAACGC
TGACCGTGGACGTGACGGAAGGGGGGGGGGACAACCCGCC
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