mRNA_H-paniculata_contig6289.14053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6289.14053.1
Unique NamemRNA_H-paniculata_contig6289.14053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6289.14053.1 vs. uniprot
Match: D8LSF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 9.420e-6
Identity = 34/73 (46.58%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 EQAAEVLDCFDPRRDGCIRYEDFLRAVEED-----RHSPYKSHNKTPDRDGRVNAVGRTTERERLASTLRRAV 204
            E+AAE+LD FDP  DG IRYEDFLR +EE      R SP     K  D  G       T+ R RL ++L RA+
Sbjct:  448 EEAAEILDRFDPHGDGNIRYEDFLREIEEGEGDHVRRSPSPRGRKAFDGGG-------TSGRGRLQASLSRAI 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6289.14053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF6_ECTSI9.420e-646.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6289contigH-paniculata_contig6289:3093..3747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930719.189059-CDS-H-paniculata_contig6289:3094..32631622930719.189059-CDS-H-paniculata_contig6289:3094..3263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3095..3263 -
1691481421.3527687-CDS-H-paniculata_contig6289:3094..32631691481421.3527687-CDS-H-paniculata_contig6289:3094..3263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3095..3263 -
1622930719.2188728-CDS-H-paniculata_contig6289:3706..37471622930719.2188728-CDS-H-paniculata_contig6289:3706..3747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3707..3747 -
1691481421.3626356-CDS-H-paniculata_contig6289:3706..37471691481421.3626356-CDS-H-paniculata_contig6289:3706..3747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6289 3707..3747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6289.14053.1prot_H-paniculata_contig6289.14053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6289 3095..3747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6289.14053.1

>prot_H-paniculata_contig6289.14053.1 ID=prot_H-paniculata_contig6289.14053.1|Name=mRNA_H-paniculata_contig6289.14053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
EQAAEVLDCFDPRRDGCIRYEDFLRAVEEDRHSPYKSHNKTPDRDGRVNA
VGRTTERERLASTLRRAVAH
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mRNA from alignment at H-paniculata_contig6289:3093..3747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6289.14053.1 ID=mRNA_H-paniculata_contig6289.14053.1|Name=mRNA_H-paniculata_contig6289.14053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig6289:3093..3747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAGGCCGCTGAGGTGTTGGATTGCTTTGATCCTCGCAGGCAAGCGAC
CTTGTCCGTCTCATATCGGCTACAACTAAAAGAAGAAAAAAAGTCTTGGG
GCGAACGTAGCATAGTTAGATTGAATCAAGAAGTCCACGGCTCAGGAAAC
AGGGGCAAACTCGGTATAGCCGTTTTCAATAGACTCCAGTATGTGCGCAG
TCCGTATTTGTTGCGTTTGTCTGTGATTAGGCATCGTTCTCAAACTGTTA
AATAAATATTTCCGCTTGTCTTAGGTGCCTGTGTGCACTCGCGTACCCAC
AGTATGGAAATACATTTTTGTATTAACTAAAAGGGGGCTCTAGCGGATAA
CATACACAACGCATGTACCCAATGCTTGAAAATTTCAACGAAGAAAAATG
TCATCTAACTCTATTGTCTGTTGTTCTCCTTCCTTCTTAACTGCAAAACA
CACTCAAATTCACCGCATGCATCATCACCTATAGAGACGGTTGTATCCGA
TATGAAGATTTTCTTCGTGCTGTCGAAGAAGATCGCCATTCACCGTACAA
GAGCCACAACAAGACCCCCGACCGCGACGGGAGAGTGAACGCCGTGGGGA
GGACAACCGAACGTGAACGGTTGGCATCCACCCTCCGCCGGGCGGTAGCT
CACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6289:3093..3747-

>mRNA_H-paniculata_contig6289.14053.1 ID=mRNA_H-paniculata_contig6289.14053.1|Name=mRNA_H-paniculata_contig6289.14053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig6289:3093..3747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACAGGCCGCTGAGGTGTTGGATTGCTTTGATCCTCGCAGGAACAGGCC
GCTGAGGTGTTGGATTGCTTTGATCCTCGCAGAGACGGTTGTATCCGATA
TGAAGATTTTCTTCGTGCTGTCGAAGAAGATCGCCATTCACCGTACAAGA
GCCACAACAAGACCCCCGACCGCGACGGGAGAGTGAACGCCGTGGGGAGG
ACAACCGAACGTGAACGGTTGGCATCCACCCTCCGCCGGGCGGTAGCTCA
CAGACGGTTGTATCCGATATGAAGATTTTCTTCGTGCTGTCGAAGAAGAT
CGCCATTCACCGTACAAGAGCCACAACAAGACCCCCGACCGCGACGGGAG
AGTGAACGCCGTGGGGAGGACAACCGAACGTGAACGGTTGGCATCCACCC
TCCGCCGGGCGGTAGCTCAC
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