mRNA_H-paniculata_contig6286.14050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6286.14050.1
Unique NamemRNA_H-paniculata_contig6286.14050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FN09_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FN09_9EUKA)

HSP 1 Score: 132 bits (332), Expect = 5.120e-35
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGGVVSLS 333
            G CN +TG C C   W GP C R +GD SIP    GWYKP  G+TW+WQ    ID  YDV+LYDID+     V+ +L + G+KVMCY SAG++E +R+D  ++PA+V GG++S +
Sbjct:   34 GKCNVITGECMCRDRWIGPDCGRKIGDLSIPKQKGGWYKPDKGITWQWQLQGEIDRTYDVDLYDIDFDTSPQVIKELHKDGRKVMCYFSAGSWEMWRKDADMYPASVKGGILSFA 148          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FQP7_9EUKA (EGF-like domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQP7_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 2.210e-29
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
            G C+  +G C+C   WTG  C R +GD+ IP  +  WYKP  G+TW+WQ    ID  +DV+LYD+D    A+V++ L   G+KVMCY SAG++E+FR D A    ++ GG
Sbjct:   19 GACDPFSGRCSCNSRWTGLYCERIIGDFRIPEHNKTWYKPKAGITWQWQLQDEIDQSFDVDLYDVDVDTSATVISQLHDAGRKVMCYFSAGSWEEFRMDEAKLAQSIRGG 128          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FCU9_9EUKA (EGF-like domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCU9_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.420e-27
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
            G C+  +G C+C   W G  C R +GD+ IP  +  WYKP  G+TW+WQ    ID  +DV+LYD+D    A+V++ L   G+KVMCY SAG++E+FR D A    ++ GG
Sbjct:   82 GACDPFSGRCSCNSRWIGSYCERIIGDFRIPEHNKTWYKPKAGITWQWQLQDEIDQSFDVDLYDVDVDTSATVISQLHDAGRKVMCYFSAGSWEEFRMDEAKLAQSIRGG 191          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FQ33_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQ33_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 1.480e-26
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSS--SLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
            G C+ + G C C   +TG  C R +GD SIP++  ++  ++P  G+ W+WQ    ID  +DV LYD+D   PAS +A L   G+KVMCY SAG+YED+R DRALFP  + GG
Sbjct:  427 GSCDPINGKCTCDSRYTGTECGRIMGDISIPANLENVERFRPQKGIRWQWQLQDTIDESHDVPLYDVDIDTPASTIASLHAAGRKVMCYFSAGSYEDWRMDRALFPEFIKGG 538          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FMI3_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FMI3_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 2.210e-26
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSS--LGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
            G C+ +TG C C   +TG +CSR +GD SIP++S  +  YKP  G+ W+WQ    ID  +DV LYDID+  P S +A L   G++VMCY SAG+ E +R D+ LFPA + GG
Sbjct:  240 GTCDPITGKCICDNRFTGTSCSRVIGDISIPTNSETVDRYKPKKGIRWQWQLQDTIDESHDVPLYDIDFDTPDSTIASLHAAGRRVMCYFSAGSTEKWRIDQELFPAFIQGG 351          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: W1RUX7_9GAMM (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Marinomonas profundimaris TaxID=1208321 RepID=W1RUX7_9GAMM)

HSP 1 Score: 87.8 bits (216), Expect = 9.680e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   91 PSSSLGWYKPPLGVTWEWQIDAL----YDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGGVVS 327
            P  +  WY+PP+ VTW+WQ+D +    YDV++YDID +  PA ++  L   GKKV+CY SAG+YED+R D A+F A  LG  +S
Sbjct:   21 PLYAADWYRPPVSVTWQWQLDGVVNEGYDVDVYDIDLFDSPADLIERLHASGKKVICYFSAGSYEDWRPDAAVFAAKDLGKTLS 104          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A354EGS3_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A354EGS3_9DELT)

HSP 1 Score: 86.3 bits (212), Expect = 4.460e-18
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  109 WYKPPLGVTWEWQIDALYD----VELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
            W+KP  G +W+WQ+    D    V +YDIDY  PASV++ L  +GK V+CY+SAG++EDFR D  L+PA VLG
Sbjct:   48 WWKPRPGTSWQWQLSGAIDTSLGVAMYDIDYETPASVISQLHAQGKTVICYMSAGSWEDFRSDAGLYPAAVLG 120          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A1D3DW53_9ACTN (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Streptomyces thermolilacinus SPC6 TaxID=1306406 RepID=A0A1D3DW53_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 4.970e-17
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   91 PSSSLGWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
            P +S   ++P  G  W+WQ+    D   DV +YDID +  PAS VADL R+G+KV+CY+S G +EDFR D + FPA+VLG
Sbjct:   48 PGASAAPWRPARGTAWQWQLTGRLDPTVDVPVYDIDGFDQPASAVADLHRRGRKVICYLSTGAWEDFRPDASRFPASVLG 127          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: UPI0011EDF13E (endo alpha-1,4 polygalactosaminidase n=1 Tax=Streptomyces sp. TRM49041 TaxID=2603216 RepID=UPI0011EDF13E)

HSP 1 Score: 83.2 bits (204), Expect = 6.130e-17
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  106 GWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
            G ++P  GV W+WQ+    D   DV +YDID + +PAS VADL R+G+KV+CY+S G +EDFR D A FP  VLG
Sbjct:   44 GVWRPEPGVAWQWQLSGGLDPAVDVPVYDIDGFDHPASAVADLHRRGRKVICYLSTGAWEDFRPDAAKFPKAVLG 118          
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A7W7TV61_9ACTN (Glyco_hydro_114 domain-containing protein n=1 Tax=Streptomyces nymphaeiformis TaxID=2663842 RepID=A0A7W7TV61_9ACTN)

HSP 1 Score: 82.4 bits (202), Expect = 9.940e-17
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   91 PSSSLGWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
            P ++   ++P  G+TW+WQ+    D   DV +YDID + +PAS VADL R+G+KV+CY+S G +E FR D   FPA VLG
Sbjct:   26 PKTTADRWRPAPGLTWQWQLSGTLDPAVDVPVYDIDGFDHPASTVADLHRRGRKVICYVSTGAWEKFRPDAGSFPAAVLG 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0FN09_9EUKA5.120e-3549.57EGF-like domain-containing protein n=1 Tax=Sphaero... [more]
A0A0L0FQP7_9EUKA2.210e-2945.45EGF-like domain-containing protein (Fragment) n=1 ... [more]
A0A0L0FCU9_9EUKA1.420e-2744.55EGF-like domain-containing protein (Fragment) n=1 ... [more]
A0A0L0FQ33_9EUKA1.480e-2647.32EGF-like domain-containing protein n=1 Tax=Sphaero... [more]
A0A0L0FMI3_9EUKA2.210e-2648.21EGF-like domain-containing protein n=1 Tax=Sphaero... [more]
W1RUX7_9GAMM9.680e-1948.81Endo alpha-1,4 polygalactosaminidase n=1 Tax=Marin... [more]
A0A354EGS3_9DELT4.460e-1852.05Endo alpha-1,4 polygalactosaminidase n=1 Tax=Desul... [more]
A0A1D3DW53_9ACTN4.970e-1750.00Endo alpha-1,4 polygalactosaminidase n=1 Tax=Strep... [more]
UPI0011EDF13E6.130e-1753.33endo alpha-1,4 polygalactosaminidase n=1 Tax=Strep... [more]
A0A7W7TV61_9ACTN9.940e-1748.75Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6286contigH-paniculata_contig6286:15..961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score132.1
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog72019.SARC_10117T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycoside-hydrolase family GH114
EggNOG OGs2RCTR@2759,39XS2@33154,COG3868@1
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons3
Model size336
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6286.14050.1prot_H-paniculata_contig6286.14050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6286 15..958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.80465-CDS-H-paniculata_contig6286:14..1131622930718.80465-CDS-H-paniculata_contig6286:14..113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 15..113 -
1691481421.1484444-CDS-H-paniculata_contig6286:14..1131691481421.1484444-CDS-H-paniculata_contig6286:14..113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 15..113 -
1622930718.8220305-CDS-H-paniculata_contig6286:428..5111622930718.8220305-CDS-H-paniculata_contig6286:428..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 429..511 -
1691481421.1695771-CDS-H-paniculata_contig6286:428..5111691481421.1695771-CDS-H-paniculata_contig6286:428..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 429..511 -
1622930718.8379467-CDS-H-paniculata_contig6286:807..9581622930718.8379467-CDS-H-paniculata_contig6286:807..958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 808..958 -
1691481421.1842678-CDS-H-paniculata_contig6286:807..9581691481421.1842678-CDS-H-paniculata_contig6286:807..958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6286 808..958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.8562384-UTR-H-paniculata_contig6286:958..9611622930718.8562384-UTR-H-paniculata_contig6286:958..961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6286 959..961 -
1691481421.1945891-UTR-H-paniculata_contig6286:958..9611691481421.1945891-UTR-H-paniculata_contig6286:958..961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6286 959..961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6286.14050.1

>prot_H-paniculata_contig6286.14050.1 ID=prot_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQID
ALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPA
TVLGGVVSLS*
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mRNA from alignment at H-paniculata_contig6286:15..961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6286.14050.1 ID=mRNA_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at H-paniculata_contig6286:15..961- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGTGCAACACGCTGACGGGATCATGTGCTTGTCCGGGGTTGTGGAC GGGACCTACCTGTTCTCGTGCCGTCGGTGATTATTCCATTCCTTCCTCGT CCCTTGGCTGGTACAAGCCCCCACTTGGGGTTACCTGGGAATGGCAGATC GATGGTAAGTAACTGTAGCACACCCGTTATCATAGAGGTAGAGGAGCGTA CTCACAAAGTCTGTGAGTTCGGCAGAGAGGGGTCTCGCGTTTTTCAATGG CAAAAAATTGCGTAACCATGGGCAATACCGATTGTGTTGAGAGTCGACGT GCCCCCTTGCTTCAAGTTGGAGAATGACGACGTGCGGGATATGCATATGC GTGGGGCTGGAATACATACACCAAAATTTGTTAATTGATTTATTGGTCGT TCTGCCGCCGTCTGAAGGACTTCCGATCCCTGGTGGTAATGGAGACGGAG CCCTATACGATGTGGAGCTGTACGACATCGACTACAGTTATCCTGCTAGT GTAGTAGCGGATCTGAAGAGAAAGGGAAAGAAGGTGCGCAATTGGGATGA CCACAGGTTCACGTTGTCTCGTTCACGTTTAGCGTAGCTACTGCACAGTA TCATTGGCGTTCGCTGACATAGCTACACTACTACACTGCATCGTTCCGCA CAGTGGGTATCGTCTTGCAATGACGGTACTGGCTTTGTAAAATGGTGTCC CCAAATATCCAAACATCCCAGCGTTTCTCTTCTCTAAATCGACCATTATG ATTTCGTTGGGGAGATCGCCATACTGTTGCTCCGGCTACAACGTTGACAG TCACCGAGGGGTGACAGACCGTGTTCACTTCCTCTTGCCTGGTGGTAGGT GATGTGCTACATTAGCGCCGGCACTTACGAGGACTTCCGCGAGGATAGAG CGCTCTTCCCGGCAACTGTTCTCGGTGGCGTGGTGAGTCTCAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6286:15..961-

>mRNA_H-paniculata_contig6286.14050.1 ID=mRNA_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig6286:15..961- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAACACGCTGACGGGATCATGTGCTTGTCCGGGGTTGTGGACGGG
ACCTACCTGTTCTCGTGCCGTCGGTGATTATTCCATTCCTTCCTCGTCCC
TTGGCTGGTACAAGCCCCCACTTGGGGTTACCTGGGAATGGCAGATCGAT
GATGTGCAACACGCTGACGGGATCATGTGCTTGTCCGGGGTTGTGGACGG
GACCTACCTGTTCTCGTGCCGTCGGTGATTATTCCATTCCTTCCTCGTCC
CTTGGCTGGTACAAGCCCCCACTTGGGGTTACCTGGGAATGGCAGATCGA
TGCCCTATACGATGTGGAGCTGTACGACATCGACTACAGTTATCCTGCTA
GTGTAGTAGCGGATCTGAAGAGAAAGGGAAAGAAGCCCTATACGATGTGG
AGCTGTACGACATCGACTACAGTTATCCTGCTAGTGTAGTAGCGGATCTG
AAGAGAAAGGGAAAGAAGGTGATGTGCTACATTAGCGCCGGCACTTACGA
GGACTTCCGCGAGGATAGAGCGCTCTTCCCGGCAACTGTTCTCGGTGGCG
TGGTGAGTCTCAGCTGAGTGATGTGCTACATTAGCGCCGGCACTTACGAG
GACTTCCGCGAGGATAGAGCGCTCTTCCCGGCAACTGTTCTCGGTGGCGT
GGTGAGTCTCAGCTGA
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