mRNA_H-paniculata_contig6286.14050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FN09_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FN09_9EUKA) HSP 1 Score: 132 bits (332), Expect = 5.120e-35 Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGGVVSLS 333
G CN +TG C C W GP C R +GD SIP GWYKP G+TW+WQ ID YDV+LYDID+ V+ +L + G+KVMCY SAG++E +R+D ++PA+V GG++S +
Sbjct: 34 GKCNVITGECMCRDRWIGPDCGRKIGDLSIPKQKGGWYKPDKGITWQWQLQGEIDRTYDVDLYDIDFDTSPQVIKELHKDGRKVMCYFSAGSWEMWRKDADMYPASVKGGILSFA 148
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FQP7_9EUKA (EGF-like domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQP7_9EUKA) HSP 1 Score: 115 bits (287), Expect = 2.210e-29 Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
G C+ +G C+C WTG C R +GD+ IP + WYKP G+TW+WQ ID +DV+LYD+D A+V++ L G+KVMCY SAG++E+FR D A ++ GG
Sbjct: 19 GACDPFSGRCSCNSRWTGLYCERIIGDFRIPEHNKTWYKPKAGITWQWQLQDEIDQSFDVDLYDVDVDTSATVISQLHDAGRKVMCYFSAGSWEEFRMDEAKLAQSIRGG 128
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FCU9_9EUKA (EGF-like domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCU9_9EUKA) HSP 1 Score: 113 bits (283), Expect = 1.420e-27 Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
G C+ +G C+C W G C R +GD+ IP + WYKP G+TW+WQ ID +DV+LYD+D A+V++ L G+KVMCY SAG++E+FR D A ++ GG
Sbjct: 82 GACDPFSGRCSCNSRWIGSYCERIIGDFRIPEHNKTWYKPKAGITWQWQLQDEIDQSFDVDLYDVDVDTSATVISQLHDAGRKVMCYFSAGSWEEFRMDEAKLAQSIRGG 191
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FQ33_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQ33_9EUKA) HSP 1 Score: 112 bits (280), Expect = 1.480e-26 Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSS--SLGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
G C+ + G C C +TG C R +GD SIP++ ++ ++P G+ W+WQ ID +DV LYD+D PAS +A L G+KVMCY SAG+YED+R DRALFP + GG
Sbjct: 427 GSCDPINGKCTCDSRYTGTECGRIMGDISIPANLENVERFRPQKGIRWQWQLQDTIDESHDVPLYDVDIDTPASTIASLHAAGRKVMCYFSAGSYEDWRMDRALFPEFIKGG 538
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A0L0FMI3_9EUKA (EGF-like domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FMI3_9EUKA) HSP 1 Score: 111 bits (278), Expect = 2.210e-26 Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 GMCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSS--LGWYKPPLGVTWEWQ----IDALYDVELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGG 318
G C+ +TG C C +TG +CSR +GD SIP++S + YKP G+ W+WQ ID +DV LYDID+ P S +A L G++VMCY SAG+ E +R D+ LFPA + GG
Sbjct: 240 GTCDPITGKCICDNRFTGTSCSRVIGDISIPTNSETVDRYKPKKGIRWQWQLQDTIDESHDVPLYDIDFDTPDSTIASLHAAGRRVMCYFSAGSTEKWRIDQELFPAFIQGG 351
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: W1RUX7_9GAMM (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Marinomonas profundimaris TaxID=1208321 RepID=W1RUX7_9GAMM) HSP 1 Score: 87.8 bits (216), Expect = 9.680e-19 Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 91 PSSSLGWYKPPLGVTWEWQIDAL----YDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLGGVVS 327
P + WY+PP+ VTW+WQ+D + YDV++YDID + PA ++ L GKKV+CY SAG+YED+R D A+F A LG +S
Sbjct: 21 PLYAADWYRPPVSVTWQWQLDGVVNEGYDVDVYDIDLFDSPADLIERLHASGKKVICYFSAGSYEDWRPDAAVFAAKDLGKTLS 104
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A354EGS3_9DELT (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A354EGS3_9DELT) HSP 1 Score: 86.3 bits (212), Expect = 4.460e-18 Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 109 WYKPPLGVTWEWQIDALYD----VELYDIDYSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
W+KP G +W+WQ+ D V +YDIDY PASV++ L +GK V+CY+SAG++EDFR D L+PA VLG
Sbjct: 48 WWKPRPGTSWQWQLSGAIDTSLGVAMYDIDYETPASVISQLHAQGKTVICYMSAGSWEDFRSDAGLYPAAVLG 120
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A1D3DW53_9ACTN (Endo alpha-1,4 polygalactosaminidase n=1 Tax=Streptomyces thermolilacinus SPC6 TaxID=1306406 RepID=A0A1D3DW53_9ACTN) HSP 1 Score: 83.6 bits (205), Expect = 4.970e-17 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 91 PSSSLGWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
P +S ++P G W+WQ+ D DV +YDID + PAS VADL R+G+KV+CY+S G +EDFR D + FPA+VLG
Sbjct: 48 PGASAAPWRPARGTAWQWQLTGRLDPTVDVPVYDIDGFDQPASAVADLHRRGRKVICYLSTGAWEDFRPDASRFPASVLG 127
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: UPI0011EDF13E (endo alpha-1,4 polygalactosaminidase n=1 Tax=Streptomyces sp. TRM49041 TaxID=2603216 RepID=UPI0011EDF13E) HSP 1 Score: 83.2 bits (204), Expect = 6.130e-17 Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 106 GWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
G ++P GV W+WQ+ D DV +YDID + +PAS VADL R+G+KV+CY+S G +EDFR D A FP VLG
Sbjct: 44 GVWRPEPGVAWQWQLSGGLDPAVDVPVYDIDGFDHPASAVADLHRRGRKVICYLSTGAWEDFRPDAAKFPKAVLG 118
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Match: A0A7W7TV61_9ACTN (Glyco_hydro_114 domain-containing protein n=1 Tax=Streptomyces nymphaeiformis TaxID=2663842 RepID=A0A7W7TV61_9ACTN) HSP 1 Score: 82.4 bits (202), Expect = 9.940e-17 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 91 PSSSLGWYKPPLGVTWEWQI----DALYDVELYDID-YSYPASVVADLKRKGKKVMCYISAGTYEDFREDRALFPATVLG 315
P ++ ++P G+TW+WQ+ D DV +YDID + +PAS VADL R+G+KV+CY+S G +E FR D FPA VLG
Sbjct: 26 PKTTADRWRPAPGLTWQWQLSGTLDPAVDVPVYDIDGFDHPASTVADLHRRGRKVICYVSTGAWEKFRPDAGSFPAAVLG 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6286.14050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6286.14050.1 >prot_H-paniculata_contig6286.14050.1 ID=prot_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MCNTLTGSCACPGLWTGPTCSRAVGDYSIPSSSLGWYKPPLGVTWEWQIDback to top mRNA from alignment at H-paniculata_contig6286:15..961- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6286.14050.1 ID=mRNA_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at H-paniculata_contig6286:15..961- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6286:15..961- >mRNA_H-paniculata_contig6286.14050.1 ID=mRNA_H-paniculata_contig6286.14050.1|Name=mRNA_H-paniculata_contig6286.14050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig6286:15..961- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |