mRNA_H-paniculata_contig62809.14045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62809.14045.1
Unique NamemRNA_H-paniculata_contig62809.14045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 2.590e-6
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
            W +DSGA+NH+TNDLS +  +++P  G + V + NG  L +  +G  +LI +S T      ++ ++P++S NL S+ K
Sbjct:   64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 53.1 bits (126), Expect = 3.670e-6
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELSFNLFSLHKM 258
            N N WV DSGA++H+T DLS +  L +P  G + V + +G  L +   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5G4I9_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G4I9_9ROSA)

HSP 1 Score: 53.1 bits (126), Expect = 3.860e-6
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 1
Query:   19 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
            +W++DSGA+NHMT DLS +  L  P      V   NG  L V  VG    + H+         V Y+P+LS NL S+H+M
Sbjct:  300 LWLADSGATNHMTTDLSNLT-LASPYPTNKTVQTANGEGLRVSHVGST--VIHTPVHPIQLNSVLYVPKLSQNLLSVHRM 376          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 53.1 bits (126), Expect = 3.880e-6
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   10 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELSFNLFSLHKM 258
            N N WV DSGA++H+T DLS +  L +P  G + V + +G  L +   G   L    T   P TL +V Y+P+L  NL S++++
Sbjct:  329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY)

HSP 1 Score: 52.0 bits (123), Expect = 9.920e-6
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 TINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
            T   G  W++DSGAS+H+T DL+ +     P  G + V +GNG  L +  +G   L  H+   +     V ++P ++ NL S+HK+
Sbjct:  360 TQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY)

HSP 1 Score: 52.0 bits (123), Expect = 9.930e-6
Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 TINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
            T   G  W++DSGAS+H+T DL+ +     P  G + V +GNG  L +  +G   L  H+   +     V ++P ++ NL S+HK+
Sbjct:  360 TQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5GW54_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GW54_9ROSA)

HSP 1 Score: 51.6 bits (122), Expect = 1.350e-5
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   19 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
            MW++DSGA+NHMT DLS +  L  P    + V   NG  L +  +G    I  +         V Y+P LS NL S+HK+
Sbjct:  361 MWITDSGATNHMTADLSNL-SLASPYPTHETVQTANGEGLPISHIGSS--IIRTPMHPLKLNSVLYVPRLSSNLLSVHKI 437          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5K0C6_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K0C6_9ROSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.400e-5
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKMQ 261
            W+SDSGASNH+T+DLS M D      G+D V +GNG  L +   G   +   S+T   A     + P ++ NL S+++ +
Sbjct:  327 WISDSGASNHITSDLSNM-DAHNEYHGKDHVAVGNGAGLTIANTGSSKITCGSSTF--ALKNTLHCPSIAANLLSIYQFK 403          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.450e-5
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
            W+SDSGASNH+T+DLS M D      G+D V +GNG  L +   G   +   S+T   A   + + P ++ NL S+++
Sbjct:  331 WISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSIYQ 405          
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU)

HSP 1 Score: 50.4 bits (119), Expect = 2.520e-5
Identity = 27/80 (33.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   16 NMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
            N+W++DSGASNH+T ++S +     P  G + + +G+G +L +   G    I H++      L V + P+++ NL S+HK
Sbjct:   23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A834W4R7_9FABA2.590e-637.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JUM8_9BRAS3.670e-638.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5G4I9_9ROSA3.860e-640.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS3.880e-638.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HVC4_FAGSY9.920e-633.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F8M1_FAGSY9.930e-633.72Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A5N5GW54_9ROSA1.350e-538.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5K0C6_9ROSI2.400e-537.50Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A5N5J6G7_9ROSI2.450e-538.46Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
A0A5E4GCQ9_PRUDU2.520e-533.75PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62809contigH-paniculata_contig62809:600..860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size262
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.3073514-UTR-H-paniculata_contig62809:599..6171622930718.3073514-UTR-H-paniculata_contig62809:599..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62809 600..617 +
1691481420.9860187-UTR-H-paniculata_contig62809:599..6171691481420.9860187-UTR-H-paniculata_contig62809:599..617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62809 600..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930718.3283062-CDS-H-paniculata_contig62809:617..8601622930718.3283062-CDS-H-paniculata_contig62809:617..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62809 618..860 +
1691481420.997656-CDS-H-paniculata_contig62809:617..8601691481420.997656-CDS-H-paniculata_contig62809:617..860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62809 618..860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62809.14045.1prot_H-paniculata_contig62809.14045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62809 618..860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62809.14045.1

>prot_H-paniculata_contig62809.14045.1 ID=prot_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDL
IFHSTTDVPATLEVSYLPELSFNLFSLHKMQ
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mRNA from alignment at H-paniculata_contig62809:600..860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62809.14045.1 ID=mRNA_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig62809:600..860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTATAAACAATGGCAATATGTGGGTGTCTGATTCTGGTGCAAGCAACCA CATGACGAATGATCTTTCAAAAATGTATGACCTTCGCAAACCGGTGGCAG GCGAAGATGTGGTGATGTTAGGGAATGGATTGACTCTGGTGGTAGATTTG GTGGGAAAGTTAGATTTGATTTTTCATTCCACTACCGATGTGCCTGCCAC GCTTGAAGTATCATACTTACCGGAGTTGAGCTTCAACCTTTTTTCCCTTC ACAAAATGCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig62809:600..860+

>mRNA_H-paniculata_contig62809.14045.1 ID=mRNA_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig62809:600..860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGTGTCTGATTCTGGTGCAAGCAACCACATGACGAATGATCTTTC
AAAAATGTATGACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATGT
TAGGGAATGGATTGACTCTGGTGGTAGATTTGGTGGGAAAGTTAGATTTG
ATTTTTCATTCCACTACCGATGTGCCTGCCACGCTTGAAGTATCATACTT
ACCGGAGTTGAGCTTCAACCTTTTTTCCCTTCACAAAATGCAAATGTGGG
TGTCTGATTCTGGTGCAAGCAACCACATGACGAATGATCTTTCAAAAATG
TATGACCTTCGCAAACCGGTGGCAGGCGAAGATGTGGTGATGTTAGGGAA
TGGATTGACTCTGGTGGTAGATTTGGTGGGAAAGTTAGATTTGATTTTTC
ATTCCACTACCGATGTGCCTGCCACGCTTGAAGTATCATACTTACCGGAG
TTGAGCTTCAACCTTTTTTCCCTTCACAAAATGCAA
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