mRNA_H-paniculata_contig62809.14045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A834W4R7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W4R7_9FABA) HSP 1 Score: 53.1 bits (126), Expect = 2.590e-6 Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
W +DSGA+NH+TNDLS + +++P G + V + NG L + +G +LI +S T ++ ++P++S NL S+ K
Sbjct: 64 WFADSGATNHLTNDLSNLQ-VKQPYDGGEQVHIANGSGLAITHIGNSELISNSKTF--RLNQILHVPDVSKNLLSISK 138
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS) HSP 1 Score: 53.1 bits (126), Expect = 3.670e-6 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 10 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELSFNLFSLHKM 258
N N WV DSGA++H+T DLS + L +P G + V + +G L + G L T P TL +V Y+P+L NL S++++
Sbjct: 111 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 190
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5G4I9_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G4I9_9ROSA) HSP 1 Score: 53.1 bits (126), Expect = 3.860e-6 Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 1
Query: 19 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
+W++DSGA+NHMT DLS + L P V NG L V VG + H+ V Y+P+LS NL S+H+M
Sbjct: 300 LWLADSGATNHMTTDLSNLT-LASPYPTNKTVQTANGEGLRVSHVGST--VIHTPVHPIQLNSVLYVPKLSQNLLSVHRM 376
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS) HSP 1 Score: 53.1 bits (126), Expect = 3.880e-6 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 10 NGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELSFNLFSLHKM 258
N N WV DSGA++H+T DLS + L +P G + V + +G L + G L T P TL +V Y+P+L NL S++++
Sbjct: 329 NANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISVYRL 408
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY) HSP 1 Score: 52.0 bits (123), Expect = 9.920e-6 Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 1 TINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
T G W++DSGAS+H+T DL+ + P G + V +GNG L + +G L H+ + V ++P ++ NL S+HK+
Sbjct: 360 TQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY) HSP 1 Score: 52.0 bits (123), Expect = 9.930e-6 Identity = 29/86 (33.72%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 1 TINNGNMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
T G W++DSGAS+H+T DL+ + P G + V +GNG L + +G L H+ + V ++P ++ NL S+HK+
Sbjct: 360 TQGTGETWLTDSGASDHITADLNNLNQ-PTPFKGPEQVSVGNGQNLPIQNIGNTQL--HTKLSLFKLRNVLHVPRIASNLLSVHKL 442
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5GW54_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GW54_9ROSA) HSP 1 Score: 51.6 bits (122), Expect = 1.350e-5 Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query: 19 MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKM 258
MW++DSGA+NHMT DLS + L P + V NG L + +G I + V Y+P LS NL S+HK+
Sbjct: 361 MWITDSGATNHMTADLSNL-SLASPYPTHETVQTANGEGLPISHIGSS--IIRTPMHPLKLNSVLYVPRLSSNLLSVHKI 437
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5K0C6_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5K0C6_9ROSI) HSP 1 Score: 50.8 bits (120), Expect = 2.400e-5 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHKMQ 261
W+SDSGASNH+T+DLS M D G+D V +GNG L + G + S+T A + P ++ NL S+++ +
Sbjct: 327 WISDSGASNHITSDLSNM-DAHNEYHGKDHVAVGNGAGLTIANTGSSKITCGSSTF--ALKNTLHCPSIAANLLSIYQFK 403
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI) HSP 1 Score: 50.8 bits (120), Expect = 2.450e-5 Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 22 WVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
W+SDSGASNH+T+DLS M D G+D V +GNG L + G + S+T A + + P ++ NL S+++
Sbjct: 331 WISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSIYQ 405
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Match: A0A5E4GCQ9_PRUDU (PREDICTED: poly n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GCQ9_PRUDU) HSP 1 Score: 50.4 bits (119), Expect = 2.520e-5 Identity = 27/80 (33.75%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 16 NMWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELSFNLFSLHK 255
N+W++DSGASNH+T ++S + P G + + +G+G +L + G I H++ L V + P+++ NL S+HK
Sbjct: 23 NIWLADSGASNHVTLNMSNLCH-SSPYTGSETLRVGDGNSLPISNTGST--ILHTSNAKFHLLNVLHTPQVAHNLLSVHK 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62809.14045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62809.14045.1 >prot_H-paniculata_contig62809.14045.1 ID=prot_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp MWVSDSGASNHMTNDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLback to top mRNA from alignment at H-paniculata_contig62809:600..860+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62809.14045.1 ID=mRNA_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig62809:600..860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62809:600..860+ >mRNA_H-paniculata_contig62809.14045.1 ID=mRNA_H-paniculata_contig62809.14045.1|Name=mRNA_H-paniculata_contig62809.14045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig62809:600..860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |