mRNA_H-paniculata_contig628.14042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig628.14042.1
Unique NamemRNA_H-paniculata_contig628.14042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig628.14042.1 vs. uniprot
Match: D8LEC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 9.200e-44
Identity = 73/100 (73.00%), Postives = 87/100 (87.00%), Query Frame = 3 
Query:  297 GTVVDEEVLISFKPSEVEVVCKPGEVALEVAQRCSGMVEDNKNPFCRDGGCYNCEVEVVEATELGLEDNLVRACMFKVPEGAKKITLIQMSSDEAFEDMV 596
            G   + ++L++FKPSEVEV CKPGEVAL+VA RCSGM ED+K PFCRDGGCYNCEVEVVEA ELG+ DNLVRAC FK+P  AK++TLIQM+S+EAFEDM+
Sbjct:   64 GGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTLIQMTSEEAFEDML 163
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BLAST of mRNA_H-paniculata_contig628.14042.1 vs. uniprot
Match: M2VVV3_GALSU (2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VVV3_GALSU)

HSP 1 Score: 66.2 bits (160), Expect = 1.790e-9
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  276 MKLETAAGTVVDEEVLISFKPSEVEVVCKPGEVALEVAQRCSGMVEDNKNPFCRDGGCYNCEVEVVEATELGLEDNLVRACMFKVPEGAKKITLIQMSSDEAF-EDMV 596
            M L+     +  ++V+I F P  V V  + G+  L+VA +   + E    PFCRDGGCY CE+E   + +L  E  L+R C + VP  +++I L ++ +D+ + E+M+
Sbjct:   35 MTLKHNESNLKSKKVVIRFLPDNVVVQAEVGKRLLDVALQAGQLKEHPLEPFCRDGGCYKCEMET--SNKLFEEYPLIRTCKYTVPVVSEEIQLTKVDNDQLWGENML 140
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BLAST of mRNA_H-paniculata_contig628.14042.1 vs. uniprot
Match: A0A7S3EKU6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKU6_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 6.340e-8
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  300 TVVDEEVLISFKPSEVEVVCKPGEVALEVAQRCSGMVEDNKNPFCRDGGCYNCEVEVVEATELGLEDNLVRACMFKVPEGA------KKITLIQMSSDEAFE 587
            T       + F+PS  EV   PGE   +VA+R   + E  +  +CRDGGCY CE+EV          +L+R C +K+PE        + ++ I+++++ AF+
Sbjct:   40 TTTTTATTVHFEPSGSEVTASPGESLFDVAERVGELAEKPER-YCRDGGCYRCEMEV--------NGDLLRICQYKIPETRTYLDVLRCVSFIRIAAEGAFQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig628.14042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEC6_ECTSI9.200e-4473.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M2VVV3_GALSU1.790e-934.262Fe-2S iron-sulfur cluster binding domain protein ... [more]
A0A7S3EKU6_9RHOD6.340e-832.35Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig628contigH-paniculata_contig628:10377..13555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3.7e-36
Seed eggNOG ortholog2880.D8LEC6
Hectar predicted targeting categorysignal peptide
EggNOG OGs2F0TI@1,2T1X5@2759
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-00_001740.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1374
Cds size453
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.6855822-UTR-H-paniculata_contig628:10376..105221622930717.6855822-UTR-H-paniculata_contig628:10376..10522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig628 10377..10522 +
1691481420.701065-UTR-H-paniculata_contig628:10376..105221691481420.701065-UTR-H-paniculata_contig628:10376..10522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig628 10377..10522 +
1622930717.7775617-UTR-H-paniculata_contig628:12780..135551622930717.7775617-UTR-H-paniculata_contig628:12780..13555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig628 12781..13555 +
1691481420.7715335-UTR-H-paniculata_contig628:12780..135551691481420.7715335-UTR-H-paniculata_contig628:12780..13555Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig628 12781..13555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.6990402-CDS-H-paniculata_contig628:10522..107261622930717.6990402-CDS-H-paniculata_contig628:10522..10726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 10523..10726 +
1691481420.7160382-CDS-H-paniculata_contig628:10522..107261691481420.7160382-CDS-H-paniculata_contig628:10522..10726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 10523..10726 +
1622930717.71609-CDS-H-paniculata_contig628:11449..114931622930717.71609-CDS-H-paniculata_contig628:11449..11493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 11450..11493 +
1691481420.727022-CDS-H-paniculata_contig628:11449..114931691481420.727022-CDS-H-paniculata_contig628:11449..11493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 11450..11493 +
1622930717.7315137-CDS-H-paniculata_contig628:11800..118941622930717.7315137-CDS-H-paniculata_contig628:11800..11894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 11801..11894 +
1691481420.7366295-CDS-H-paniculata_contig628:11800..118941691481420.7366295-CDS-H-paniculata_contig628:11800..11894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 11801..11894 +
1622930717.7457597-CDS-H-paniculata_contig628:12412..124871622930717.7457597-CDS-H-paniculata_contig628:12412..12487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 12413..12487 +
1691481420.7491975-CDS-H-paniculata_contig628:12412..124871691481420.7491975-CDS-H-paniculata_contig628:12412..12487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 12413..12487 +
1622930717.7626426-CDS-H-paniculata_contig628:12744..127801622930717.7626426-CDS-H-paniculata_contig628:12744..12780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 12745..12780 +
1691481420.7609897-CDS-H-paniculata_contig628:12744..127801691481420.7609897-CDS-H-paniculata_contig628:12744..12780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig628 12745..12780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig628.14042.1prot_H-paniculata_contig628.14042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig628 10523..12780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig628.14042.1

>prot_H-paniculata_contig628.14042.1 ID=prot_H-paniculata_contig628.14042.1|Name=mRNA_H-paniculata_contig628.14042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MRAPGMMLEAVCLLSLMGYGHGFLMYGSTTGWRRRQDGNLKGLMKLETAA
GTVVDEEVLISFKPSEVEVVCKPGEVALEVAQRCSGMVEDNKNPFCRDGG
CYNCEVEVVEATELGLEDNLVRACMFKVPEGAKKITLIQMSSDEAFEDMV
*
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mRNA from alignment at H-paniculata_contig628:10377..13555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig628.14042.1 ID=mRNA_H-paniculata_contig628.14042.1|Name=mRNA_H-paniculata_contig628.14042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3179bp|location=Sequence derived from alignment at H-paniculata_contig628:10377..13555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGGGTACCCCCTGCGCATGTTCTCTCCAGCACGTCCCGACTTCCTACA
TAGATCGTACACTGTACGGTCTGTGCATGACTAACAGCTGCACTGACTTT
GTGTACTTGCGTGTTTGCCTGTAGCACCAATACGACCAAGTGGATCATGC
GAGCGCCAGGGATGATGCTAGAAGCGGTTTGCTTGTTGTCGTTGATGGGC
TACGGCCACGGGTTTTTGATGTACGGGAGTACAACGGGTTGGCGGCGGCG
CCAAGACGGCAACTTGAAGGGATTGATGAAGCTGGAAACAGCAGCAGGGA
CAGTGGTAGATGAGGAGGTACTCATTAGCTTCAAACCTTCCGAGGTCGAG
GTATGTAAGGATTGCGTTGAATACCATACGCTACTACTTCTCTTCTGCCG
TTGTCTGCTTGCGCCTGATTTGGCAATATGGGTTTCCTTTGAACGCGTAG
TTGCACACAACAGGGCGACTTTCACTTGACCGCCTTCACTATACTGGCAT
TATTTAGACGACAACAATGATGATATGCCCTTGAAATATTTGTGTGTTGT
TCTCGCGCCTATGTTGTGTTCAGTATTCATCATCCACACACAAGCGCTCG
CTGTGCTCACATGTTGGTCTATGTCTATGAAGATTCGTTTGTAAAATTCA
CTTCACTACAGATACTAAAAAAAAATCCGAAATTATCGTCATCACCTTGC
GCATTACTGGACTTTTGTGTTGATCAAGTCATTATTAGTACCCTGTTGCC
CTGTGTTGCCCTACTTGTGCTTGCAACTTGCACAAAACGCGAGTAGCGTT
AAACTTAGAGGTGGGAGCAGGAGATTTAAGGTACGCAGGGACACAAATGT
CAAGTGGAAGCGAGCTTGTGAGCCATACTTTTCCAATCCCATGGATTAAT
GATGCTTCATGATTCCGTCTTCTCGTACACGTGTTTTGCTGATAGCGGCG
AACAGGACGTGCGGAAGAATATAAGCGCTTGTCTTCGCCCGTAGCCGCAA
TAGCTCCCGACCCTAAATGCTCATCCCCGCACATGTCGGACGGTACTGTC
TGTGCTGCCCATGCTGGACGCAGGTGGTCTGCAAGCCAGGGGAGGTTGCT
CTAGAGGTTGCCCAGAGGTGAGCTCTTCTGCGTTGCACTACTAGTCTCGA
AAGCCAAATGGATATTGGCTATCATATGAGGCGAAACTCGCAAAAGTCTA
CAGCTAACCACACTGCCACGTGTTTATAAACAGATGTGTACCGTGTACAG
CACCAACCCGATGGTCAAGTTAGTTAGCTAATTTCGAGGTCAGAAAAATG
AAAATCTAGTAAATTCCTAGGAAGGAAACGTGCTTAATACTGATCTAAGT
ATTATTGCAAGTCATCGAAAGACGAGGAAAACGACATTAGTGCGGTTGCT
GATCTCTTGTGGATAATGACTTAGGTGTTCTGGCATGGTAGAGGACAACA
AGAACCCATTCTGCCGAGATGGAGGCTGCTACAATTGTGAGGTAGAGGTA
GTCGAGGCTACAGAATTGGTGAGTGCACGACTTGCGTCTGGGCATACGTA
CCCCGAGCTCTGCTCAACAGGTTTGCTGACGTATCACGAACTGAAGTCTC
GCAATGCAAAACTGGAGTATCGCACGTATTGCTCAGGAGCTTGGCGATTT
TTTCAAGCTTTCAAGACAGGAGATAACCAGTATAATCTTGTCTCATATGT
AATATATCGCAGAGGCTGCTGCGGTGGCATACTTTAACCCGCTTGCATTC
GAACGTAACCTCTACCGTTGTTTTTGTTCCGTGCGTGGGTACGGGTATTG
CGTCTACGTTGTTTTTTAGTAGCTTGGAGTGGAAGTTGGAATCCTGCCCC
ATCGCAAGGGCAGGTAGGTCTCTTGCCTCTTAATGATCACGTTGCCATGA
GTAAACCGACGAATGCTCACTACAACCGGCAGTACAAGCACGGCACATCG
GTAACTGCGCCTCTTCCTTAGTACACTAATGCCTGCATTCTCAAAGTTAC
ATTTCATATTTCACTTTCTTCTGATGCCATGCGCAGGGATTGGAAGACAA
TTTGGTGCGGGCTTGTATGTTCAAGGTTCCCGAGGGAGCCAAGAAAATTA
CTCTTATTCAGGTATGTAGCTGTTTTTGACCATATTCGGCGTAAACACCA
CGGATCGGCTGTGATCAGATGTACTTACGCACAGTTGGATCTCATTGGTA
CATGAAAATATACTCGATACACACACGGACTTTTTTGCCCTCACCGTGTG
GTAGAAGTGTAGATATCAGAAAGTGGGTGTATCTGCAAGGTGTCTCTACA
GTATTGGGTATGAACTGACCGCTGTTTCTCGTGTGCCTGCCCGACGTTAA
ACTTCCTAATTGACCCAGATGTCGAGCGACGAAGCGTTTGAAGACATGGT
GTAGGCTGACCTCTGGCTAAGTGGCGGGTAGTGAAGTGGAACGAGGGAAG
CAATGAGGTCACCTCTACCTTGAACGGTGTTGCGATTGTTTTACGAGTTA
GGCTATGATCCGGCGACACTATGCAATAGACACCGTGACATCATAAGTGA
CACACAGTCATGAAATTGTTTGTACTGTGAGGTCGTGGTCTGTTTCGTTG
GTTCGTGATGTTTTTTTTTTAGGCAGGCGTGATTTGGACGCGTAGCTGCA
TGCGGATAGACATACCTGCAAGAGAAAACAGCAGGCTGTCCAGACCACTC
ATTCACGCGAAAAGTTACTTTGTTACATCGACCAGCCAAGCTTTGGGTTA
AAACGCTGAAATAGTTTTCGCGTGCGGGTATTGTTGATGTACATACTGCA
CATGATATTTTAGGGATACATGCTGTTTTGCAGTAGTCCATAATAGCGTA
CCGCTATCTACACCTAAAAGTGAGTACAACTAGCGGAATGTGGGGAGACT
TGTTGCGCGTGCAATTTTTCGGCCCTAACATGGCCACTGAAGAACAGGTC
CAGGCCTCTTGTGCATCCTTGCACTTGCTTAATAATAGTTGTTATTGCTG
ACAATGCAGCTTTTTAATGTTTCGTAAATAGTTAGCACATTGATAGATGA
AGTAAACATGTTTTTTACTACCGGCCCGCCGAACAGGTGATACTTGAAGG
TTAATTGACAATCTGATTTATAGAGTAAATTCGCACAACGTCCGTCGAGG
ACAGTTGCTGCCCTCGCATAGGTTGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig628:10377..13555+

>mRNA_H-paniculata_contig628.14042.1 ID=mRNA_H-paniculata_contig628.14042.1|Name=mRNA_H-paniculata_contig628.14042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig628:10377..13555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGCGCCAGGGATGATGCTAGAAGCGGTTTGCTTGTTGTCGTTGAT
GGGCTACGGCCACGGGTTTTTGATGTACGGGAGTACAACGGGTTGGCGGC
GGCGCCAAGACGGCAACTTGAAGGGATTGATGAAGCTGGAAACAGCAGCA
GGGACAGTGGTAGATGAGGAGGTACTCATTAGCTTCAAACCTTCCGAGGT
CGAGATGCGAGCGCCAGGGATGATGCTAGAAGCGGTTTGCTTGTTGTCGT
TGATGGGCTACGGCCACGGGTTTTTGATGTACGGGAGTACAACGGGTTGG
CGGCGGCGCCAAGACGGCAACTTGAAGGGATTGATGAAGCTGGAAACAGC
AGCAGGGACAGTGGTAGATGAGGAGGTACTCATTAGCTTCAAACCTTCCG
AGGTCGAGGTGGTCTGCAAGCCAGGGGAGGTTGCTCTAGAGGTTGCCCAG
AGGTGGTCTGCAAGCCAGGGGAGGTTGCTCTAGAGGTTGCCCAGAGGTGT
TCTGGCATGGTAGAGGACAACAAGAACCCATTCTGCCGAGATGGAGGCTG
CTACAATTGTGAGGTAGAGGTAGTCGAGGCTACAGAATTGGTGTTCTGGC
ATGGTAGAGGACAACAAGAACCCATTCTGCCGAGATGGAGGCTGCTACAA
TTGTGAGGTAGAGGTAGTCGAGGCTACAGAATTGGGATTGGAAGACAATT
TGGTGCGGGCTTGTATGTTCAAGGTTCCCGAGGGAGCCAAGAAAATTACT
CTTATTCAGGGATTGGAAGACAATTTGGTGCGGGCTTGTATGTTCAAGGT
TCCCGAGGGAGCCAAGAAAATTACTCTTATTCAGATGTCGAGCGACGAAG
CGTTTGAAGACATGGTGTAGATGTCGAGCGACGAAGCGTTTGAAGACATG
GTGTAG
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