mRNA_H-paniculata_contig62735.14037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62735.14037.1
Unique NamemRNA_H-paniculata_contig62735.14037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: D1J770_ECTSI (Uncharacterized protein ycf66 n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J770_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 8.650e-55
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINIVFGANFLLGLLIILGVL+LYFLR++RPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIAAKLK K
Sbjct:    1 MINIVFGANFLLGLLIILGVLILYFLRSVRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSLVLAAGWENIRLRGLIAAKLKKK 95
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BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A1N7TJI4_9PHAE (Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI4_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.710e-54
Identity = 89/106 (83.96%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK*NY*GFIIIEL 318
            MINIVFGANFLLGL+II+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIA KL+N  NY  FI+I L
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKLRNNYNYQTFILINL 106
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BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A0S0GLI0_COSCS (Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GLI0_COSCS)

HSP 1 Score: 169 bits (428), Expect = 1.210e-52
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINIVFGANFLLGL+IILGVL+LYFLR IRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIA K+K +
Sbjct:    1 MINIVFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQ 95
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BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A8F0F7Z8_9PHAE (Uncharacterized protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F7Z8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.920e-52
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINI FGANFLLGL+IILGVL+LYFLR IRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIA K+K +
Sbjct:    1 MINIAFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQ 95
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A109QSJ6_9PHAE (Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 6.100e-50
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINIVFGANFLLGL+II+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIA K+K +
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQ 95
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A141BSB5_9PHAE (Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB5_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.530e-49
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINIVFGANFLLGL+ I+GVL+LYFLR IRPEL RDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIA K+K +
Sbjct:    1 MINIVFGANFLLGLITIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQ 95
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A8E6D4V4_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4V4_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.270e-48
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            M+NI FGANF+LGLL++ GVL+LYFLR I+PE++RDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIA K+K K
Sbjct:    1 MVNITFGANFILGLLVMTGVLILYFLRMIKPEVARDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLLVSLCLAAGWENIRLRGLIAKKIKEK 95
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: A0A7S6ZP91_9STRA (Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP91_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.500e-44
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK*NY 294
            MINI FGAN +LG  +ILG+L+LYF+R +RPELSRDEDIFF TLGLIY  ILIIHGWRLDPILLFSQVL++SI L+ GWENIRLRGLIA K+K++  Y
Sbjct:    1 MINIGFGANLVLGFFVILGMLLLYFVRIVRPELSRDEDIFFATLGLIYSCILIIHGWRLDPILLFSQVLIISIILSTGWENIRLRGLIAKKIKDQITY 98
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: B7T208_VAULI (Uncharacterized protein ycf66 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T208_VAULI)

HSP 1 Score: 145 bits (365), Expect = 4.980e-43
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK 285
            MINI FG N +LG L ++GV +LY +R +RPELSRDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVL+++I+LAAGWENIRLRGL+A K+K++
Sbjct:    1 MINIGFGTNLILGFLFVIGVTLLYLVRIVRPELSRDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLILAISLAAGWENIRLRGLVAKKIKDQ 95
[Close]
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Match: D7PJ09_9DINO (Uncharacterized protein ycf66 n=10 Tax=Sar TaxID=2698737 RepID=D7PJ09_9DINO)

HSP 1 Score: 138 bits (348), Expect = 1.520e-40
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIA--AKLKNK 285
            MIN+ FG N  LG+++ +GVL+LYFLRN++PE++RDEDIFF T+G +Y  IL++HGWRLDPILLFSQVL++   L AGWENIRLRGLIA  AK+KNK
Sbjct:    1 MINLSFGPNIFLGIIVSIGVLILYFLRNVKPEVARDEDIFFATIGFLYSCILMVHGWRLDPILLFSQVLIIITVLVAGWENIRLRGLIANLAKVKNK 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62735.14037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J770_ECTSI8.650e-5593.68Uncharacterized protein ycf66 n=7 Tax=Ectocarpales... [more]
A0A1N7TJI4_9PHAE3.710e-5483.96Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A0S0GLI0_COSCS1.210e-5291.58Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S... [more]
A0A8F0F7Z8_9PHAE4.920e-5290.53Uncharacterized protein n=3 Tax=Phaeophyceae TaxID... [more]
A0A109QSJ6_9PHAE6.100e-5086.32Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6... [more]
A0A141BSB5_9PHAE3.530e-4985.26Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB... [more]
A0A8E6D4V4_9PHAE7.270e-4881.05Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A7S6ZP91_9STRA2.500e-4474.49Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T208_VAULI4.980e-4373.68Uncharacterized protein ycf66 n=1 Tax=Vaucheria li... [more]
D7PJ09_9DINO1.520e-4067.01Uncharacterized protein ycf66 n=10 Tax=Sar TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62735contigH-paniculata_contig62735:388..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue7e-41
Seed eggNOG ortholog2880.D1J770
Preferred nameycf66
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ycf66 protein N-terminus
EggNOG OGs2901P@1,2SANI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size320
Cds size288
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.0772045-CDS-H-paniculata_contig62735:387..6751622930717.0772045-CDS-H-paniculata_contig62735:387..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62735 388..675 +
1691481420.4158225-CDS-H-paniculata_contig62735:387..6751691481420.4158225-CDS-H-paniculata_contig62735:387..675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62735 388..675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.102543-UTR-H-paniculata_contig62735:675..7071622930717.102543-UTR-H-paniculata_contig62735:675..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62735 676..707 +
1691481420.4263043-UTR-H-paniculata_contig62735:675..7071691481420.4263043-UTR-H-paniculata_contig62735:675..707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62735 676..707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62735.14037.1prot_H-paniculata_contig62735.14037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62735 388..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62735.14037.1

>prot_H-paniculata_contig62735.14037.1 ID=prot_H-paniculata_contig62735.14037.1|Name=mRNA_H-paniculata_contig62735.14037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MINIVFGANFLLGLLIILGVLVLYFLRNIRPELSRDEDIFFTTLGLIYGA
ILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAAKLKNK*
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mRNA from alignment at H-paniculata_contig62735:388..707+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62735.14037.1 ID=mRNA_H-paniculata_contig62735.14037.1|Name=mRNA_H-paniculata_contig62735.14037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=320bp|location=Sequence derived from alignment at H-paniculata_contig62735:388..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAATATAGTTTTTGGAGCAAATTTTCTTCTGGGACTTCTAATCAT
TTTAGGCGTGTTAGTTTTATATTTTTTAAGAAATATACGCCCTGAACTCT
CAAGAGATGAGGATATTTTTTTTACGACATTAGGTTTAATTTATGGTGCT
ATTTTAATTATCCATGGTTGGCGACTAGATCCAATATTATTATTTAGTCA
AGTCCTTTTAGTTAGTATAGCTCTTGCAGCTGGTTGGGAGAATATAAGAC
TTAGAGGCCTAATTGCAGCAAAATTAAAGAACAAATAAAATTATTAAGGA
TTCATTATAATAGAATTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig62735:388..707+

>mRNA_H-paniculata_contig62735.14037.1 ID=mRNA_H-paniculata_contig62735.14037.1|Name=mRNA_H-paniculata_contig62735.14037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig62735:388..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAATATAGTTTTTGGAGCAAATTTTCTTCTGGGACTTCTAATCAT
TTTAGGCGTGTTAGTTTTATATTTTTTAAGAAATATACGCCCTGAACTCT
CAAGAGATGAGGATATTTTTTTTACGACATTAGGTTTAATTTATGGTGCT
ATTTTAATTATCCATGGTTGGCGACTAGATCCAATATTATTATTTAGTCA
AGTCCTTTTAGTTAGTATAGCTCTTGCAGCTGGTTGGGAGAATATAAGAC
TTAGAGGCCTAATTGCAGCAAAATTAAAGAACAAATAAATGATAAATATA
GTTTTTGGAGCAAATTTTCTTCTGGGACTTCTAATCATTTTAGGCGTGTT
AGTTTTATATTTTTTAAGAAATATACGCCCTGAACTCTCAAGAGATGAGG
ATATTTTTTTTACGACATTAGGTTTAATTTATGGTGCTATTTTAATTATC
CATGGTTGGCGACTAGATCCAATATTATTATTTAGTCAAGTCCTTTTAGT
TAGTATAGCTCTTGCAGCTGGTTGGGAGAATATAAGACTTAGAGGCCTAA
TTGCAGCAAAATTAAAGAACAAATAA
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