mRNA_H-paniculata_contig62735.14036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62735.14036.1
Unique NamemRNA_H-paniculata_contig62735.14036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: D1J769_ECTSI (Photosystem II reaction center X protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J769_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.920e-19
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A6G6D7E9_ECTSI (Photosystem II reaction center X protein n=29 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7E9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.240e-18
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSLTNFLSSLIAGGLVVVLPIS ALFFVSKKDALTRVSSKK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISLALFFVSKKDALTRVSSKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A344PF83_9PHAE (Photosystem II reaction center X protein n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A344PF83_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.130e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSLTNFLSSL+AGGL+VVLPIS ALFFVS+KDA+TRVS KK
Sbjct:    1 MTPSLTNFLSSLVAGGLIVVLPISLALFFVSQKDAITRVSPKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A8F0F7I0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSLTNFLSSL+AGGL+VVLPIS ALFFVS+KDALTR+  KK
Sbjct:    1 MTPSLTNFLSSLLAGGLIVVLPISLALFFVSQKDALTRIPIKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A2R4QPT4_9PHAE (Photosystem II reaction center X protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPT4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.920e-12
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSLTNF  SLIAGGL+VVLPI+ AL FVS+KD+LTRV  KK
Sbjct:    1 MTPSLTNFFYSLIAGGLIVVLPITLALSFVSQKDSLTRVPPKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A1L2F1S9_9PHAE (Photosystem II reaction center X protein n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.400e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MTPSL NFL SLIAGG++VVLPI+ AL FVS+KDA+TRV  KK
Sbjct:    1 MTPSLANFLYSLIAGGIIVVLPITVALSFVSQKDAITRVPPKK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A2I4Q2Y0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2Y0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.580e-9
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MT SLTNFL SLIAGG++VV PI+ AL FVSKKDA+ RV   K
Sbjct:    1 MTSSLTNFLLSLIAGGIIVVGPITLALLFVSKKDAIIRVPQGK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A6P0NFK4_9CYAN (Photosystem II reaction center X protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NFK4_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 5.220e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 129
            MT SLTNFL SL+AGG +VV+PI+ AL FVS+KDA+ RV   K
Sbjct:    1 MTSSLTNFLLSLVAGGAIVVIPITLALLFVSQKDAIIRVPQGK 43          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A7S6U9U3_9STRA (Photosystem II reaction center X protein n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.960e-8
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTR 114
            MT SL+NFL SLI GGLVVV+PIS AL FVS+KD +TR
Sbjct:    1 MTASLSNFLLSLITGGLVVVVPISLALIFVSQKDQVTR 38          
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Match: A0A1C9CCW8_9RHOD (Photosystem II reaction center X protein n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCW8_9RHOD)

HSP 1 Score: 52.4 bits (124), Expect = 3.590e-8
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTR 114
            MTPSL NF SSLI G ++VVLPI+ AL FVS+KD LTR
Sbjct:    1 MTPSLANFFSSLILGAVIVVLPITAALLFVSQKDRLTR 38          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62735.14036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J769_ECTSI3.920e-19100.00Photosystem II reaction center X protein n=1 Tax=E... [more]
A0A6G6D7E9_ECTSI3.240e-1897.67Photosystem II reaction center X protein n=29 Tax=... [more]
A0A344PF83_9PHAE3.130e-1686.05Photosystem II reaction center X protein n=5 Tax=E... [more]
A0A8F0F7I0_9PHAE2.580e-1583.72Photosystem II reaction center X protein n=1 Tax=P... [more]
A0A2R4QPT4_9PHAE2.920e-1276.74Photosystem II reaction center X protein n=2 Tax=F... [more]
A0A1L2F1S9_9PHAE8.400e-1274.42Photosystem II reaction center X protein n=14 Tax=... [more]
A0A2I4Q2Y0_9PHAE2.580e-969.77Photosystem II reaction center X protein n=1 Tax=D... [more]
A0A6P0NFK4_9CYAN5.220e-965.12Photosystem II reaction center X protein n=1 Tax=M... [more]
A0A7S6U9U3_9STRA2.960e-873.68Photosystem II reaction center X protein n=1 Tax=S... [more]
A0A1C9CCW8_9RHOD3.590e-871.05Photosystem II reaction center X protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62735contigH-paniculata_contig62735:173..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930717.028702-CDS-H-paniculata_contig62735:172..3041622930717.028702-CDS-H-paniculata_contig62735:172..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62735 173..304 +
1691481420.403437-CDS-H-paniculata_contig62735:172..3041691481420.403437-CDS-H-paniculata_contig62735:172..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62735 173..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62735.14036.1prot_H-paniculata_contig62735.14036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62735 173..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62735.14036.1

>prot_H-paniculata_contig62735.14036.1 ID=prot_H-paniculata_contig62735.14036.1|Name=mRNA_H-paniculata_contig62735.14036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK*
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mRNA from alignment at H-paniculata_contig62735:173..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62735.14036.1 ID=mRNA_H-paniculata_contig62735.14036.1|Name=mRNA_H-paniculata_contig62735.14036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig62735:173..304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACCATCTTTAACAAATTTTTTATCCAGCTTAATCGCTGGTGGTCT TGTTGTAGTATTACCTATTAGCTTCGCATTATTTTTTGTTAGTAAAAAAG ATGCTTTAACTCGGGTATCGTCAAAAAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig62735:173..304+

>mRNA_H-paniculata_contig62735.14036.1 ID=mRNA_H-paniculata_contig62735.14036.1|Name=mRNA_H-paniculata_contig62735.14036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig62735:173..304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACCATCTTTAACAAATTTTTTATCCAGCTTAATCGCTGGTGGTCT
TGTTGTAGTATTACCTATTAGCTTCGCATTATTTTTTGTTAGTAAAAAAG
ATGCTTTAACTCGGGTATCGTCAAAAAAATAGATGACACCATCTTTAACA
AATTTTTTATCCAGCTTAATCGCTGGTGGTCTTGTTGTAGTATTACCTAT
TAGCTTCGCATTATTTTTTGTTAGTAAAAAAGATGCTTTAACTCGGGTAT
CGTCAAAAAAATAG
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