mRNA_H-paniculata_contig6272.14034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6272.14034.1
Unique NamemRNA_H-paniculata_contig6272.14034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6272.14034.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.910e-26
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:  427 MTTFLERHYLTTIHSTIVSQEDQEKDYGLAVNAQDLIHFDSRLGYLVLHRPDLLLGLMREALDLVQSRIVAQ 642
            MTTFLER YL TIH TIVS +DQEKDY LAVNAQDLIHFDSRL YLVLHRPDLLL LMREAL  VQ+RIVA+
Sbjct:    1 MTTFLERRYLATIHRTIVSAQDQEKDYALAVNAQDLIHFDSRLAYLVLHRPDLLLELMREALGEVQARIVAE 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6272.14034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM73_ECTSI6.910e-2683.33MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6272contigH-paniculata_contig6272:5167..9498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue7e-24
Seed eggNOG ortholog2880.D8LM73
Preferred nameMCM9
KEGG koko:K10738
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0042555,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097362,GO:1901360
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0477@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons5
Model size749
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6272.14034.1prot_H-paniculata_contig6272.14034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6272 5167..9496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.8039858-CDS-H-paniculata_contig6272:5166..52191622930716.8039858-CDS-H-paniculata_contig6272:5166..5219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 5167..5219 +
1691481420.3180711-CDS-H-paniculata_contig6272:5166..52191691481420.3180711-CDS-H-paniculata_contig6272:5166..5219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 5167..5219 +
1622930716.819013-CDS-H-paniculata_contig6272:6962..73121622930716.819013-CDS-H-paniculata_contig6272:6962..7312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 6963..7312 +
1691481420.3289785-CDS-H-paniculata_contig6272:6962..73121691481420.3289785-CDS-H-paniculata_contig6272:6962..7312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 6963..7312 +
1622930716.838648-CDS-H-paniculata_contig6272:7864..79821622930716.838648-CDS-H-paniculata_contig6272:7864..7982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 7865..7982 +
1691481420.3413305-CDS-H-paniculata_contig6272:7864..79821691481420.3413305-CDS-H-paniculata_contig6272:7864..7982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 7865..7982 +
1622930716.8547122-CDS-H-paniculata_contig6272:8858..89311622930716.8547122-CDS-H-paniculata_contig6272:8858..8931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 8859..8931 +
1691481420.3493748-CDS-H-paniculata_contig6272:8858..89311691481420.3493748-CDS-H-paniculata_contig6272:8858..8931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 8859..8931 +
1622930716.882705-CDS-H-paniculata_contig6272:9343..94961622930716.882705-CDS-H-paniculata_contig6272:9343..9496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 9344..9496 +
1691481420.364381-CDS-H-paniculata_contig6272:9343..94961691481420.364381-CDS-H-paniculata_contig6272:9343..9496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6272 9344..9496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6272.14034.1

>prot_H-paniculata_contig6272.14034.1 ID=prot_H-paniculata_contig6272.14034.1|Name=mRNA_H-paniculata_contig6272.14034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
LCLPRLPDLYTPIAPSSWQHIIPRRDRSHSEDQYPSEDSDNAGGTSNPSG
YNSNASQGPASQEPEINRSGHNRGGRVVEGRDMQRGGGGGVPIGRGGGYG
RGLLRVRRPRGTTRGPRGGGQRAEDLKTYNPKVIGPDEYVGEMTTFLERH
YLTTIHSTIVSQEDQEKDYGLAVNAQDLIHFDSRLGYLVLHRPDLLLGLM
REALDLVQSRIVAQAEEIWASRSRFGSSGSGGGGRSFAANGGDIPNGGE
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mRNA from alignment at H-paniculata_contig6272:5167..9498+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6272.14034.1 ID=mRNA_H-paniculata_contig6272.14034.1|Name=mRNA_H-paniculata_contig6272.14034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4332bp|location=Sequence derived from alignment at H-paniculata_contig6272:5167..9498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCCTGCCAAGGTTGCCCGATCTCTATACACCCATCGCTCCATCGAG
CTGGTAAGTCTCACGCACAGTGCCATATTTACTCTAGGATAGAGTAGTTT
TCATAGGAAAAAACTGGGGCTTGAAGCAGTATTCATGAATGAAAAGTTAG
CATTTTCATTTCAATTTCAAAATTCTATATCTCCACTGTAGAGTACAGAC
GGCCTGGGCTTATTCCGCCCAGCTTGCACTCGTGTTGCCACCTCAGTTAG
TAGGTGATTAGCATGAGCTTTTGTTCCCACTTGAACTACGCAAAGGTGTC
GAGTACTGCTGTATTTATACTAGGTCCACGGATATCTGTAGTCCAGTGCA
CAGCACCCAGCACAGCAGCTCTATAAAATGTAATTAGCTTACACAACTGT
CCTGTACAGTACAGCAATGCAGTACAAATACATGGAGTATACACCAGAAC
AGTGCCCGTCCGATCGTAAGGAATGAAGTTGTAAGAAACTAAGGCTCACT
TTGGCCAACCCATGAGAAATTTGGCCTAGGAAATGGGCTCAAATTCTGGC
GTCGTACCAATTCTTCTGTAGAAGTGAGAAACAACACTACTCGTGATTCT
CTTCAAAATAAGGTTTTGAGCCTCACCCGAAATACGAGTTTTTTTTATCA
TCGCGCCCGTACTAGAGTTGTAGCCCGAGATTCAGCCGTTTTTTTAGAGC
TGCTGCATAATGCAAACATTGCAACCCGGTATAGTAGCACAAACTGAGCT
GTTGTAATGAAGGGGGGGGGGGGGTCGAAATGCCTTATTCTAAGACCATC
GTTTTGTGAATTAGCATGATTTAGCCGATTCCTCAGGGTTTGAGAAACGC
CGACAGCAAAAGAAACAGAAATAAACATGGATCAGCGCCTCTCTCAGGTC
TGAGAGATGCCTGCTGCTCGGAGAAAAGTATGGTGCATAATTCGATCTCT
CATCAGCGCTGAGAACACAGCCTGATCTCTGCGAAAATGGCTTCAACTAG
CGCTAATTGATTTATTTTTGGTGACCTTCACGTTGTTTGTCTCCCGCCAG
CTCATGTCTCGGGCTGAGGATGGCACTATTCGCTCCCCCAAAACGCAAGT
CCTTGTCATAGTTGTCAGCTTCCCTTTGGTTCAAAAGGTCCAACACCAAT
AACCTCACCGTACCATAAGCATTCTGGACCATGAGCCAGTCATGGACAAG
CTGTGCACTCTGCCTGGCATGATCGACAGGTAATTTGTTCCAGTTCGTTA
CAGGTATTAGTCGCGTTTTGAACACCCGAGGACATCAGAGGCGACGGAAC
AAACTAATTGCTCGTTCAAGAATAATCGGCCCTGAAGAATGTCTACATTT
TTTTTAGTTCTTTTGGGGGGGAAACGACAGTTTCAGGTACACCTAGGCTC
GTTTTGGCCACTTTTAGGTACAAGGTTAGGGCGCTGTATACTCCGGCCAA
AATACGGCCTGCTGATTGGTCGAGATCGTATAACATCGAGCCGCGGCCAC
ATTTCATCCAAGAGTACCCAGAAATTTCTACTTATCCCAATAACCTGTAC
CTACACGCCGGGCAATACCTATATCTGGCCGAAATTGTACCAAAACCGGG
CGAGAAACGGCCGCCCAAGATCCCGTGCAACGCGCATGAAAACAGTTGCA
TGAACGACCACAACGCATGAAAACAATGGCCAAAACTAGCCTAGGCCTAC
CTAAAACTGTCATTTCCCTTTCTTTTCCTGTTTCTGACAAACCCCATCTA
CCCGCCCGGCGGTGTCGTGCTCTACCGCCCCACGCCTCCATCATAGGCAA
CACATAATACCACGCAGAGATCGATCTCACAGCGAAGACCAATACCCCAG
TGAAGACAGTGACAACGCCGGCGGCACGAGCAATCCGTCAGGATATAATA
GCAACGCCAGCCAAGGGCCAGCAAGTCAAGAGCCAGAAATAAATCGTAGT
GGCCACAATCGCGGCGGAAGGGTTGTGGAGGGCCGAGATATGCAGCGTGG
TGGTGGTGGAGGGGTGCCAATAGGTAGGGGTGGTGGGTATGGGCGTGGCT
TATTGAGAGTGCGACGGCCGCGCGGAACTACTAGGGGGCCACGGGGCGGT
GGGCAGCGAGCGGAAGATCTGAAGACTTACAACCCTAAAGTCATAGGTGA
GTGTTATTGACCGTACTGCAGTAAGGCATACATTTTTGGGCAGCATGTGT
GGCGTACAGTACAGATAGCTACTGTAGTCGTGGTAACCTTTGAACACGCA
CCTGGTGGAGGAAGGCGACAAAAGCTTTCCAGTCGTAGATCATGATGCCG
GTGATGTACAAAGAAATCGGAGATGGTGGAGGGGGATTTGCCGCCGTGAA
TGCAACGTGGCAACGGTGGAATTGTCATAACGCGACCTGGTGCTGAATGG
GGAAAATCTGGGTGTGCCATTTGGCAATAGGGGATGTTGCAGAAGAAGGT
CTATCGTCGTTCACTGCGACAGTTTCGGGTTCCGAAGAAAAATGGCTGCT
GCGATATAGCGTCCTTTTTTTATGGGCAAATACTAAAGCGTGCCTTGCAG
TTGCTTCCCGCTCCCGTCTCATGCGTTTCACATGATTGACATTGATTCCG
CTGGTCGAGAGACAGGCAAAGACAGACGGAGAGGGAAACGTTGTTGAAAA
CTAATAATCCAACTCAAGTTCCTTTGAATTGCGTCGCAAAACGAAAAGGT
CCGGACGAGTACGTGGGCGAGATGACGACGTTTCTGGAGCGGCACTATCT
GACCACGATACACTCCACTATCGTCAGCCAAGAAGATCAAGAGAAGGACT
ACGGGCTTGCAGTCAAGTAAGCTACAAAACAGCATTTTCTACATTGAATG
GTAATATTTCGCGGTGCTTCATAGCGTAGAAGGTCACGAGAAGCAGTATG
CACTCGCAGTCTAGTGAGCTACGTGAGTAACTTCGGGGTTTGCAATATTT
TCAACGGTGTTTCATACACTAAATTCATACGTGGTGTTTTCAGTTATGCA
CAGGAATCATGTTGGCCGAGATGAAGCAGCGTCTTCGGCAATGCAATTTT
TACGGGAAGATGGGGTGTATCTACAGTAGGATGCTTCGTTGGGCCTCGAC
CTATCGAATCCAAACCGAAAATCCTCTGCTGCAAGTGGATACTCCACGAA
CGGCTATCCAGGCCCACGGCCAAGGGCGCTGTTGGTTTTACATGACGTCA
AGGTCAATAGAAATTTCGCACCAGAGCTCGGAATTCTGCGAGGAAAGGTT
AGACAAAACCCGGAGCCTGCGTCTCTGTACGGTGGCCTTTGGATGGCGAC
ACCTTCCTCGGGTATTCAGAAATGACCATGCCATGTCGATCTCACCACAT
TCCACCTGCGTGTGAAGTCAGATGGTATCAGCTCAGGCTAGTACGCTGGT
ATTACTGTGGGGAACGACGTGTAAAATCCTTGTGCTTGTCCTCCTTCGCT
CCCTTTTTTGTCATTCGCTTTTTTCCTTTCGAAGAAAAGACTGTAGTATC
GTCCTTTTTCACTTTGACCAGAGTTGGTAATGACTGCAGACAATCCTTAA
CGTGTTTCCTTACCCAGAAAACCTCCGTATGAAATACCGTAATCATAGCG
TTGGATGGGCACATATTGTCGCATCATCTATCATGTGTGCAACCTACCGA
AATTATTACCCCTGCGATACGCGTCGTTTTGGTATTTTTAAGCGCTCAAG
ACCTCATTCATTTCGACTCGCGCCTGGGATACCTGGTCTTGCATCGTCCC
GACCTTCTACTAGGGGTGAGTGGGAACGATACATCTGTCTGGAATTTGCT
CAACGAAACAGTGATTTGGATCACCTCGCTGCGGAAAATTCTCCCATATC
TCCACTGTAGAGGCTCCAATTCACTTGGAAAAACATCGGAGTACTATTGC
AGTGGACCCACAATGTGTACAGAAGTTGTACCCGCTTATGGGGTCGGTAC
ACTTCTCTAGCCTTTATTTATTTCGGTAATTTTGTAGTTTAGTCTCCGCG
TCTATCTCTCTGTCCCTGTCTTCGTCTCTGTCTCTCTCGCCCCGAGCCCT
TGAAGCTAGAGGGATCCCCTACCCCTTACCCCTTCATGAGCCGTTGACAG
ATATACGAAATATGTATGCATTGATTTTTCTACCCTCGAGCTGTACGCTT
CGTGGACGCTTCACTCGTGCGTCACAGCTCATGCGAGAAGCTTTGGACCT
CGTGCAGAGTCGCATAGTGGCGCAAGCCGAGGAAATATGGGCTAGTAGAA
GCCGTTTCGGCAGCTCGGGCAGCGGCGGCGGCGGCAGGAGTTTCGCGGCG
AATGGCGGGGATATCCCGAACGGCGGAGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6272:5167..9498+

>mRNA_H-paniculata_contig6272.14034.1 ID=mRNA_H-paniculata_contig6272.14034.1|Name=mRNA_H-paniculata_contig6272.14034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig6272:5167..9498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGCCTGCCAAGGTTGCCCGATCTCTATACACCCATCGCTCCATCGAG
CTGCTTTGCCTGCCAAGGTTGCCCGATCTCTATACACCCATCGCTCCATC
GAGCTGGCAACACATAATACCACGCAGAGATCGATCTCACAGCGAAGACC
AATACCCCAGTGAAGACAGTGACAACGCCGGCGGCACGAGCAATCCGTCA
GGATATAATAGCAACGCCAGCCAAGGGCCAGCAAGTCAAGAGCCAGAAAT
AAATCGTAGTGGCCACAATCGCGGCGGAAGGGTTGTGGAGGGCCGAGATA
TGCAGCGTGGTGGTGGTGGAGGGGTGCCAATAGGTAGGGGTGGTGGGTAT
GGGCGTGGCTTATTGAGAGTGCGACGGCCGCGCGGAACTACTAGGGGGCC
ACGGGGCGGTGGGCAGCGAGCGGAAGATCTGAAGACTTACAACCCTAAAG
TCATAGGCAACACATAATACCACGCAGAGATCGATCTCACAGCGAAGACC
AATACCCCAGTGAAGACAGTGACAACGCCGGCGGCACGAGCAATCCGTCA
GGATATAATAGCAACGCCAGCCAAGGGCCAGCAAGTCAAGAGCCAGAAAT
AAATCGTAGTGGCCACAATCGCGGCGGAAGGGTTGTGGAGGGCCGAGATA
TGCAGCGTGGTGGTGGTGGAGGGGTGCCAATAGGTAGGGGTGGTGGGTAT
GGGCGTGGCTTATTGAGAGTGCGACGGCCGCGCGGAACTACTAGGGGGCC
ACGGGGCGGTGGGCAGCGAGCGGAAGATCTGAAGACTTACAACCCTAAAG
TCATAGGTCCGGACGAGTACGTGGGCGAGATGACGACGTTTCTGGAGCGG
CACTATCTGACCACGATACACTCCACTATCGTCAGCCAAGAAGATCAAGA
GAAGGACTACGGGCTTGCAGTCAAGTCCGGACGAGTACGTGGGCGAGATG
ACGACGTTTCTGGAGCGGCACTATCTGACCACGATACACTCCACTATCGT
CAGCCAAGAAGATCAAGAGAAGGACTACGGGCTTGCAGTCAACGCTCAAG
ACCTCATTCATTTCGACTCGCGCCTGGGATACCTGGTCTTGCATCGTCCC
GACCTTCTACTAGGGCGCTCAAGACCTCATTCATTTCGACTCGCGCCTGG
GATACCTGGTCTTGCATCGTCCCGACCTTCTACTAGGGCTCATGCGAGAA
GCTTTGGACCTCGTGCAGAGTCGCATAGTGGCGCAAGCCGAGGAAATATG
GGCTAGTAGAAGCCGTTTCGGCAGCTCGGGCAGCGGCGGCGGCGGCAGGA
GTTTCGCGGCGAATGGCGGGGATATCCCGAACGGCGGAGAGCTCATGCGA
GAAGCTTTGGACCTCGTGCAGAGTCGCATAGTGGCGCAAGCCGAGGAAAT
ATGGGCTAGTAGAAGCCGTTTCGGCAGCTCGGGCAGCGGCGGCGGCGGCA
GGAGTTTCGCGGCGAATGGCGGGGATATCCCGAACGGCGGAGAG
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