prot_H-paniculata_contig62710.14033.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62710.14033.1
Unique Nameprot_H-paniculata_contig62710.14033.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length127
Homology
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 105 bits (262), Expect = 5.010e-24
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 0
Query:   14 LKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            +KGPEAE W+A M++E  +L ENGTW+  D   LP GRKA+  KWI KRKL EDG+V RY ARL+AQGF+Q  G D  E    V R  T R + ++A++     +  DV  AYL
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYL 111          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q7XLA3_ORYSJ (OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XLA3_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 1.810e-23
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+ T+  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EGGD F+T   VAR++T+R + SLAA H      MDV   +L
Sbjct:  133 PKSISEAYASPDADYWKETVRSEMDSIIANGTWEVTE---RPYGCKPMGCKWVFKKKLRPDGTIEKYKARLIAKGYTQKEGGDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 250          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A2Z7C5M8_9LAMI (Uncharacterized protein (Fragment) n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C5M8_9LAMI)

HSP 1 Score: 103 bits (258), Expect = 2.520e-23
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    6 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            EP++  EAL  PEA  W+  +++E  +++ N TWE  D   LP G K +  KWI KRK KEDGS+ +Y ARL+A+GF Q EG D F+T   V R++++R + ++AA H+ E   MDV  A+L
Sbjct:  755 EPQTIQEALSNPEAPFWKEAIQDEIDSIMHNHTWELTD---LPPGCKPLGCKWILKRKYKEDGSIDKYKARLVAKGFRQKEGYDFFDTYSPVTRITSIRVLIAIAALHELEIHQMDVKTAFL 873          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI)

HSP 1 Score: 103 bits (257), Expect = 3.420e-23
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 0
Query:    6 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            EPKS  EAL  PEAE WR  M+EE+G+L EN TWE  +P   P+G K I  KW  K K  E+G + RY ARL+ +GF Q +G D  E    V+R  TLRT+ ++AA  D E + +D+  A+L
Sbjct:  560 EPKSLGEALNSPEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEVDQLDIKTAFL 678          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 100 bits (248), Expect = 4.810e-23
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 0
Query:    6 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            EP S  EA++  E++ W+A M+EE+ +L+ENGTW   +   LPAGRKAI +KW+ K+K    G+V ++ ARL+AQGFSQ  G D       VA  +TLRT+ S+A +   +   +DV  AYL
Sbjct:    8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYL 126          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q7XRW0_ORYSJ (OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XRW0_ORYSJ)

HSP 1 Score: 101 bits (252), Expect = 1.630e-22
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+  +  E  ++V NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  A+L
Sbjct:  672 PKSISEAYASPDADYWKEAVRSEMDSIVANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 789          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL)

HSP 1 Score: 101 bits (251), Expect = 1.730e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+  +  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  A+L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 301          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: B9GAB8_ORYSJ (Integrase catalytic domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9GAB8_ORYSJ)

HSP 1 Score: 101 bits (251), Expect = 2.100e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+  +  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  A+L
Sbjct:  531 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 648          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q53NX4_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53NX4_ORYSJ)

HSP 1 Score: 101 bits (251), Expect = 2.120e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+  +  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  A+L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 301          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q337R3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q337R3_ORYSJ)

HSP 1 Score: 101 bits (251), Expect = 2.170e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    7 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 127
            PKS +EA   P+A+ W+  +  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  A+L
Sbjct:  659 PKSISEAYASPDADYWKEVVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 776          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL5.010e-2450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7XLA3_ORYSJ1.810e-2342.98OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID... [more]
A0A2Z7C5M8_9LAMI2.520e-2345.08Uncharacterized protein (Fragment) n=2 Tax=Dorcoce... [more]
A0A1Y1IGG8_KLENI3.420e-2347.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A182GDL1_AEDAL4.810e-2345.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7XRW0_ORYSJ1.630e-2242.98OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp... [more]
I1PQ20_ORYGL1.730e-2242.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
B9GAB8_ORYSJ2.100e-2242.15Integrase catalytic domain-containing protein n=1 ... [more]
Q53NX4_ORYSJ2.120e-2242.15Retrotransposon protein, putative, Ty1-copia sub-c... [more]
Q337R3_ORYSJ2.170e-2242.15Retrotransposon protein, putative, Ty1-copia subcl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 47..127
e-value: 2.3E-14
score: 53.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..125
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 5..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62710contigH-paniculata_contig62710:174..554 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62710.14033.1mRNA_H-paniculata_contig62710.14033.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62710 174..554 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62710.14033.1 ID=prot_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
AVSKREPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAG
RKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARM
STLRTVFSLAAEHDFESEGMDVDEAYL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like